mRNA_P-littoralis_Contig1.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.130.1
Unique NamemRNA_P-littoralis_Contig1.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:798983..799563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size568
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.695814-UTR-P-littoralis_Contig1:798982..7990531680789307.695814-UTR-P-littoralis_Contig1:798982..799053Pylaiella littoralis U1_48UTRP-littoralis_Contig1 798983..799053 -
1680789307.7387748-UTR-P-littoralis_Contig1:799366..7995631680789307.7387748-UTR-P-littoralis_Contig1:799366..799563Pylaiella littoralis U1_48UTRP-littoralis_Contig1 799367..799563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.7177017-CDS-P-littoralis_Contig1:799053..7992771680789307.7177017-CDS-P-littoralis_Contig1:799053..799277Pylaiella littoralis U1_48CDSP-littoralis_Contig1 799054..799277 -
1680789307.7289078-CDS-P-littoralis_Contig1:799290..7993661680789307.7289078-CDS-P-littoralis_Contig1:799290..799366Pylaiella littoralis U1_48CDSP-littoralis_Contig1 799291..799366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.130.1prot_P-littoralis_Contig1.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 799054..799366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.130.1

>prot_P-littoralis_Contig1.130.1 ID=prot_P-littoralis_Contig1.130.1|Name=mRNA_P-littoralis_Contig1.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MAIVRGAALPLAHTKTQNSKQDVVFLSIRHGIIARPSPPHSAQPMLDYRT
THNTIHRTPEHIFKSTHLKTAPTRRGWAQTGAPASTPPSTYYSTHPFFL*
back to top

mRNA from alignment at P-littoralis_Contig1:798983..799563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.130.1 ID=mRNA_P-littoralis_Contig1.130.1|Name=mRNA_P-littoralis_Contig1.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=581bp|location=Sequence derived from alignment at P-littoralis_Contig1:798983..799563- (Pylaiella littoralis U1_48)
CACCCGCCACGCCCTTCATCTACCGCCCGCGTCCCCTCTCCCCCCAGCCG
AAAGAAAATGAATGCAACGGAGGGCGGAAATAAACGCAACCAGTCTTGAC
CACATACGAACAAACAAACGACAAAAAAATCGGTTCAAAGAAAGGCAGAC
AATGCCTCCAACAACCCGATAATAAAGTTGGGTCCGAAAAAGAGCGGATG
GCCATAGTAAGGGGAGCGGCTCTTCCGCTCGCACACACAAAAACACAAAA
CTCCAAACAAGACGTCGTTTTTCGCGAAACTCTAAGTTTCTATACGACAC
GGCATCATAGCCCGCCCCTCCCCGCCGCATTCAGCACAACCTATGCTTGA
CTACAGAACAACCCACAACACCATCCACCGAACCCCGGAGCACATCTTCA
AATCAACACATTTAAAAACAGCACCCACCCGCCGTGGATGGGCGCAAACA
GGAGCGCCCGCAAGCACGCCACCATCCACCTACTACTCTACGCATCCGTT
TTTTTTATAAATTACCATGTTCTCACGTCACGAAGGCAGCGAACTGACCT
AACCCCAAACTACCCAAAGGCGCTGGAGGCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:798983..799563-

>mRNA_P-littoralis_Contig1.130.1 ID=mRNA_P-littoralis_Contig1.130.1|Name=mRNA_P-littoralis_Contig1.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1:798983..799563- (Pylaiella littoralis U1_48)
ATGGCCATAGTAAGGGGAGCGGCTCTTCCGCTCGCACACACAAAAACACA
AAACTCCAAACAAGACGTCGTTTTTCTTTCTATACGACACGGCATCATAG
CCCGCCCCTCCCCGCCGCATTCAGCACAACCTATGCTTGACTACAGAACA
ACCCACAACACCATCCACCGAACCCCGGAGCACATCTTCAAATCAACACA
TTTAAAAACAGCACCCACCCGCCGTGGATGGGCGCAAACAGGAGCGCCCG
CAAGCACGCCACCATCCACCTACTACTCTACGCATCCGTTTTTTTTATAA
back to top