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Homology
BLAST of mRNA_P-littoralis_Contig197.79.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.320e-31 Identity = 92/210 (43.81%), Postives = 115/210 (54.76%), Query Frame = 1
Query: 46 PAVGGREAVCRVQSSRRGYQFVDNYFVRVLGGRAAWELPPGAVGATKLAAARIALGKFEVILRQACLATDLALLTPYLNDDDGDNNMADADVDDEAPASDASSGTSVNSDNEP*EEPSLFLPPGITGQRLVRVNRWDLQ---------------------------RLQSTPGAGRRAVVFNYPPAHLTGASMFSCALMSIGYNVTALVR 594
P GG+ A S R+GYQ +DNY VRVL G++AW+LPPG VG ++L AARIALGKFEV+LR CLA DL LL PYL +ADA A + E + +L G G +L+R NRWDLQ R Q PG GRRAVV+N P H+TG +MFSC LMS+G++VTA+V+
Sbjct: 111 PERGGKRADAS-SSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADA----------ARETEDLLESGE-----AHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVK 304
BLAST of mRNA_P-littoralis_Contig197.79.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.860e-30 Identity = 93/214 (43.46%), Postives = 115/214 (53.74%), Query Frame = 1
Query: 46 PAVGGREAVCRVQSSRRGYQFVDNYFVRVLGGRAAWELPPGAVGATKLA----AARIALGKFEVILRQACLATDLALLTPYLNDDDGDNNMADADVDDEAPASDASSGTSVNSDNEP*EEPSLFLPPGITGQRLVRVNRWDLQ---------------------------RLQSTPGAGRRAVVFNYPPAHLTGASMFSCALMSIGYNVTALVR 594
P GG+ A S R+GYQ +DNY VRVL G++AW+LPPG VG T+L AARIALGKFEV+LR CLA DL LL PYL +ADA A + E + +L G G +L+R NRWDLQ R Q PG GRRAVV+N P H+TG +MFSC LMS+G++VTA+V+
Sbjct: 111 PERGGKRADAS-SSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADA----------ARETEDLLESGE-----AYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVK 308
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1967 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 447 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789946.2113595-CDS-P-littoralis_Contig197:324080..324108 | 1680789946.2113595-CDS-P-littoralis_Contig197:324080..324108 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig197 324081..324108 - |
| 1680789946.220625-CDS-P-littoralis_Contig197:324624..324788 | 1680789946.220625-CDS-P-littoralis_Contig197:324624..324788 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig197 324625..324788 - |
| 1680789946.2295692-CDS-P-littoralis_Contig197:325104..325359 | 1680789946.2295692-CDS-P-littoralis_Contig197:325104..325359 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig197 325105..325359 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789946.2392576-UTR-P-littoralis_Contig197:325359..326417 | 1680789946.2392576-UTR-P-littoralis_Contig197:325359..326417 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig197 325360..326417 - |
| 1680789946.2505167-UTR-P-littoralis_Contig197:329323..329432 | 1680789946.2505167-UTR-P-littoralis_Contig197:329323..329432 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig197 329324..329432 - |
| 1680789946.2615538-UTR-P-littoralis_Contig197:329639..329800 | 1680789946.2615538-UTR-P-littoralis_Contig197:329639..329800 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig197 329640..329800 - |
| 1680789946.2719007-UTR-P-littoralis_Contig197:330241..330349 | 1680789946.2719007-UTR-P-littoralis_Contig197:330241..330349 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig197 330242..330349 - |
| 1680789946.2823355-UTR-P-littoralis_Contig197:331218..331302 | 1680789946.2823355-UTR-P-littoralis_Contig197:331218..331302 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig197 331219..331302 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig197.79.1 >prot_P-littoralis_Contig197.79.1 ID=prot_P-littoralis_Contig197.79.1|Name=mRNA_P-littoralis_Contig197.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MLGLEPPLTTTKQQRQRQPPGEESGREDGRNVVGVAIDEGIHQSSSHEAF DVSVLCTAYADVNALFEPHSRVESRLGGALLWNVNKTIWNIHSVSQAFGS GAIPPAAHEFAARVPSKEEGKEGKTPPPSFLTVYGSHVGRWAESLQEAY back to topmRNA from alignment at P-littoralis_Contig197:324081..331302- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig197.79.1 ID=mRNA_P-littoralis_Contig197.79.1|Name=mRNA_P-littoralis_Contig197.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7222bp|location=Sequence derived from alignment at P-littoralis_Contig197:324081..331302- (Pylaiella littoralis U1_48) GCAGAAGAAGAGCGAAAACACGGTGCGAGCGAGAGGGCTGACAGTCCCGC
CGTGGGAGGCCGTGAGGCCGTTTGTCGCGTGCAGGTGTGAAGATGCTCGG
TGTCTACGCAAAGAGTCTGATATTTTGTGTTTTTTAACGATATGGTATTT
ATATTTTTGTGATATGACATGTACACCCAAGAATCCGCTCGACAATCTAA
TGTGTCTGATTCTTTGTCATGAACTAGTTTGTATGTGTACCGGTACAGGT
ATAAATATTTCGTTTTTGTCATGCACTCACAAGTCCGCCAATCTTGTGTC
CGCAGGTCTAAAGCAGCAGTAGTACCGACCGGGAGTAGGCAAGATCACCA
CACGTGTGTCGGCTGGTGCTAGGAGTTTGGTCCAGAGGGAAGAGAGCATC
AGGTTTTCTTGCATGCCAAAACGAGAATCGGGAGCGCCGGAAACAGCTTA
ACCCGAGCACCAAAACTGATTGCGTACGTATTATATGGATTCGGCGTTAG
CTCACACAGCCAACAACAAACAACGAGCAGTGTCCTTTGTTTTCGTTATT
TTTGGGAGCAACAAAGCCGCTTCACTCAAGACTCTCCGAGCTATTTCGGT
GAGATCACAGTCAAGACCCTCCGAGCTATTTCGGTGAAAATAGAAAATAG
ATGCCAGCGGCCACCGCGAGCCCCTCCAACTTCATTCACAGCCCATACTT
TGATACATCGCATGAAACAACACGTACACACACAGAGCAGGAGAGATTGT
TCGACATCAGTTTTGCGCCAGCAGAGACGTGTACAGGCGTGAACGAGGTG
AGGGAGCTCTCGACAGGGGCCACGACGAAGGGTCCGACCATTACTGGCAG
AAGTTCTGCCGATTGGATTGGAGTGGATTGGACTGTGGTTGTTGTGTTGT
GTCCCCCCACCCCAGCAGGCGTTCTTGCCAATGTTACCTCTTCTTCCCCT
CAGAGCTCTCGGAGAGGCTACCAGTTCGTGGACAACTACTTCGTCCGCGT
GCTGGGTGGGAGAGCGGCGTGGGAGCTTCCCCCAGGGGCTGTTGGAGCCA
CCAAGCTCGCGGTACGGTGTGGGTGGATGGAATGGATGGGATGGGTCAGG
CAGAATGCGCTCGCACCGTTGTTCTTGCTGTTGTCATTTGCAGTAAGATA
GAGACTTGGGAACGGGCGCGAGCATCTAGTTTCCGAGTTTACTTTCAGGA
TCTCGGCCGCATAGTCGACGGGTGCACAAACATTTTGGTATCATGCTGTT
CACAAACGGGGGGATTCACTCATTCCCCTTGGGGAGCATACGTGTGTCTG
GCTTCTTGCGTTGTCGCTGCTGCCGAGGCATGTTCATTCACGTATTGCAT
CAAATGTTACTTGCTGCCCGCGCTAATTTGCACGGCTGTGCTGATTTATG
TCTGTTGGCAAGGACGAAGAGACGATATTTCTGGCTGTCTGTCTGCCTGC
CTGCCTGTCTGTCTGTGCGCGCCCTCCCTGCGTCTCTCTTGCCTCTTTGC
AGGCGGCACGCATCGCGCTCGGAAAGTTTGAGGTCATTCTGCGGCAAGCT
TGTCTCGCGACAGATCTCGCGCTGCTTACGCCCTACCTCAACGACGACGA
CGGTGACAACAATATGGCCGATGCCGATGTCGATGATGAGGCTCCGGCTT
CGGACGCGTCGAGGTGGGTGGGTCGGTTGAGGGTGGGTGGCTGGGTGAGT
GGTGGGTGGGTTGCATGCCATGAACACGTAATCATCAGATCTTTCTTTCT
CTCATGTTCTGTCTTCTCCACCCCCCATATCTTCCACTCCCTCCCTCCCT
CCCTCCCTCCCTCCTCTCTCTCTCCTGGTCTTTCTCGCCGTCTCTCGCCT
CTATCCCAACAACTCGATAGTGGCACTAGCGTGAATTCCGACAACGAACC
ATAAGAAGAGCCTTCCCTCTTCCTGCCTCCGGGGATCACGGGGCAACGCC
TCGTCAGAGTGAACCGCTGGGATTTGCAGGTGATTTACCGCCCTCCCCAG
CCCTCTCCGCCACCTTCTCTCCTCCCCTCTCCTGCTTGTCCCTTCCCGAC
TTCCGTCCCCGCCCCCTGCCTCCACCCGCGGGATGTACACGCGGGTACAA
GAGAGCGGCACTCGAATGGGTTGGTGCCCGAGGTTTGGTATGCCCTTGCC
GCGCAATTATTTCTTTTTCTCGTGAAAGCAAGATTCTTGTTTGTCGGCGA
CGGTTGATGATGATGCCATCCGTATCTAATAAAACCTACGCATGTGATGT
TAAGCCCTGCTCTTGTGTTTTCGGTCGAACCGCGCTGTGTATTAGATAGT
CCCTTTGAACGAAGTCGATGCGAGCCGTCTTACACTGCCCTTTTGCCTTT
GCAAATTTGCCATCGCAAATCTGTCGGATGATATGTGGAAAAGTACATGG
AAAAACATTACACCCAGAAACTTTGTTGACGAATGAGCTGCAACTAAAGA
CGCCGTGAACCCTACGGCAACAGGTATCATATATGACAGGTTGTCTCTCA
GTTTAACAAGCCAACCACTTCGTGCACAGATATCATAACATCAACGACAG
ACGACATACAGTAGTGCTAGCTGGTTGACACGTGAACCCTTACGACAACA
GCTCGGGGATGACTGGTGCTGCGCGCCGGTTTTGTGCTTGTGCTTGTGCG
TTTGCTGTGCTGTACTCGCCATCCACCGGGTTGTTGTGCGGTGTCGTGTT
GTGTCGTGTCGTTCCGTGTTGTCGGTTCGCGCGTCACGGAAAACGTCAAG
CTTTGGGAATTCGCGAACGGGCTAGCGGCCTCCAGGAGCAGCACCCTGGA
GGGGTACCTCTGCGGCTCTTCAGAGTTAGCGAGGATGCAGGTACGGTAGG
TGTGCTGCTCGGTTGTGCGTGCTCCCTCCATACGCTATGCTGCTGGAACA
AGGAAGGATTCAGAACAGCCGCTGTAGAGCACGGAGCGAAGAAGCCCCCC
CCCTCGGGCCCCTGGCTGATTTTTCGTTGACGCGTTATTCTTCCAGAGCG
GGAAAATAATGCCGCAGACGCCAAAAATCACACAAGCAGTTCACAAATAT
GAAGATCATGATCTAGATCAATCAGATCATTCAGATCTCGAGTTGGAGAA
ATGTCACGGAGGTCATCAGATTCACTAAAAACACTAGTTGGAAAATTGTC
ACTGATCATCACCAGATCATTCAGATCACCGGTTGGAAAAATGTCACAGA
TCATCAGAGAACTCAGATCACTAGTCGGACGGTTGTACAGATTATCGGAT
CACGCAGATCACACCGTTTGTTGGAAAATGTCGTAAGACCCTCCAGATCA
CTCAGATCACCATGATCTGCGACGTATCATGGCAGTTATCGATGGCAGCA
GCTCGTCTCCCGGCACGTCAGCTGCAGATGAAGGCAGTAAGATTATGGAT
GAGGATGGTGGCGGTAGGTGGTAACACAGCCCACGACGATGTACGGTGTT
TCGTCGGGGGCTGTGTGTAGCACCGTGATCTGGATTTGACGTGCCAGAAG
AAGAGCTGCTGCCACCCACATCTACCATGCTACGCGTGGCGTCGTGTCCG
AGTTGTGTTGCGTGTGCATGGAGCTTGGAGCGCTCTCTGTTGGGACTTGC
TCCAGTCTCGCCGCCCAAAACAAAACACACAGATGTAATATATTTTATCT
CGAACAGTGAATTGAATCTAGGAATGAATAACAAGATCTCGATCTTGTCG
TTAAAAACAAAATTACCCGCTCGCTCGCACCCCATGCTAAAATTATCTGT
GGGCCACGAGTCACCTGTGCGCGCAGGTCGCCATTTGAAAAAATTCCACA
GATTATTCAGATCACACGGATCATTAGTTGGGAAAATGTCATAGATGATT
AGATCAGTCAAATCAATAGTTGAAAAAAGTCACGGATTATCAGATCACTC
AGATTACCGGTCGGAATAGTGTCCTCCGGACCACCCCCGATCACCATGAT
CTGCGATTGATCTCGATTCAGATCCGATGTAAGTGATCTGTGACCTGCGC
CATTTGTGTATTGGTTAACTCACGCCGTGTCTTGCTGCACAGGGGTCTCG
CCGAGATCGTTCCTTGCAACATGCACACCGTGTTGTTGTTGTCACTCTAA
CCGTCACGGTCATTCAAAAATGCACGTGTCCACGGAAACAATCAAGTTCG
GTGGGGAGCGGGAAGTTGGGTGGGGGGAGGGGGGGAGTTTGCCCCGTGTC
TTGCTTCAGACGGGACGTTACAAACGGATGAAGGGGTTGGGAGTGAACGA
AGGCAGCAGTGCGTTCGCCGAAGCGAGGCGTTATTTTCAATTCCAGGTTT
GAGAGCTCAAGGGTTTTATTCGTGCCTTTGATTGTGATATGTAGTTACGC
GGGTCTCGAGTGGAAATATAAAGTAAAGTAAGATTTTCTCCGATGGGTCC
GCCGATATTGTTCAAGCTCCTCTACCTATATCGAAAACGTACTCAGTAGA
AGCCCTGCGATATGAAGGCCGACACGAGCTACACAACCGTTAAAAGTAGC
TCGTTACCGTGCAAGGAGGCTATACTGTACTGGGTAAAAATTTGCATCGT
ACCTGAAACCGTACAGCCGCAGAAGCATGAGTCGAACGCGGATCTCTGAG
CGCTCAGCAAGTCCTACATATGTACTCTTGATCTTGAAATGCAAGTCTAT
GTTACCGAGCAATCATAATCCAGGCAAGACTTAATTCACGTGTCCTGCGC
GAACTCTGAACCAACATGTCTCTCTCCTTTCTCTTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTGTGTGTGTTGCGGC
TGTGCTCCTGTGCGCCGCTTGCTGTGATGTCACGTTGGGTCTTGTATTTC
GTAACGTCTTTCGTGGCGGCGGCGGCGGCGGGCAGCGGCTGCAGAGTACC
CCAGGAGCAGGACGCCGCGCGGTAGTGTTCAACTACCCCCCGGCACACCT
GACTGGAGCGTCCATGTTTTCTTGCGCTTTGATGTCGATTGGATATAACG
TCACCGCGCTTGTCCGGGTGCGAATATAAGACAAACAAAGGCAAAAAAAC
AACAGCAGGAAATTTCCCGCTGTTTACTGTGGGAGCGTGTCTGAGGGTTA
CATGTGTTTGTTATGCGCCAGGTATGTGTGGTATGATGCGCCTGATCGTC
CACGTTTTTTTTTTCTCCTTTTCTTGGACCGGTTGGGGTTACAAATAAAC
AGATTCACATGCATACATATATACGTATGTATGCATTCTTATTTTTTCGT
ACGTCAGATCTACGTGTGCATCGTGTGCGATCATTCTGTGAGAACAACCC
GTCAACTTCGCCAAGAGTATATCATTGGAGGATCCCCCCCCCCCTCCCCC
TCTTCCACCCTACCCACAATTTTGTTGTTGTTGTTTTGCTGTTGCGCCGT
TACCTCATGTGGACAAACAATATCTGCCGTTGTGCAAGGAAACCCGCAAT
TGGCATTTCATCGTTAAGGGGGGGCTCCCAGCTGTCCCCTATCCGGGGGG
GCGCTCCAGAGGAACCAAATGCTGTAAACCAACATACTTTCGAAGTTTAC
GCCCGTTACACCGGACAGATTCGTCCGCATCCGTCTCTTCTGTTCTTGTG
TAGTGCGTGGCGACTCGGGCGGGCGACGAAAACGCTGCAGTAATACAACG
ACACGACAATGCTTGCAAATGGACTCGAAATGAGCGCGCACTTGACCGCC
ATCTCGCTTGTTATTTTCTTGTTTTTTCCCCACCCACCCGCACACCCGGC
CGTCACTGCCGCAACAAGCACTTGGCGCACACGTACACACCGGTACCGCC
GTTTGTTGTAATGCCAGCAATCAGTCGTGAGCTACAAAAAACTTTTTCCC
TGCACCCACCAAGTTTTCCGACTGAGGACCTCCCTCGTCGCCGCAGCACA
CGGCGGCGGCAGGCAAATCGTCTTGGACGCGACAGTCGCCGGCATGTTGG
GCTTGGAGCCGCCTTTGACTACCACCAAACAACAGCGGCAGCGGCAGCCA
CCGGGAGAGGAGAGCGGCCGTGAAGACGGGAGGAACGTCGTCGGCGTCGC
AATCGATGAGGGTATTCACCAATCAAGTAGCCACGAGGCGTTTGACGTTT
CTGTGCTGTGCACGGCGTATGCAGATGTCAACGCCCTCTTCGAGCCCCAC
AGCCGAGTGGAATCAAGGCTGGGGGGAGCTCTGCTGTGGAATGTGAACGT
GAGATGCATGTCGTTATTTTTCCGTATGTAGGACGCGCACATTGCCGTAC
ACATGGGCGACGTGATGTGACCGAATTGTCACCATGACAGCAGTTGTTCG
ACAATACTCAGTTTTCCATTCGTGCGGTCATATTTATATACATACATACA
TACATACATACAGACACAAAAAATTTACCGCACATGTTTACCTCTACGCG
CATTAATGTAAACCGTGAGCGCCCCGCCCCCCTTGCTTCGAAACCGAAAC
CTAAGTAACAGCACAACAATGATAATACCACAAAATAATACTTCGTACAC
AAATATAATATCAGAAGACGATCTGGAACATCCACTCGGTAAGTCAGGCG
TTCGGAAGCGGCGCCATACCTCCGGCTGCGCACGAATTCGCCGCGAGAGT
CCCCTCGAAAGAAGAGGGAAAGGAGGGAAAGACGCCCCCACCGAGCTTTC
TCACCGTCTACGGGTCGCATGTGGGAAGGTGAATGATGGGGGGCTCTGCT
TTCGTCTGGTTTGTGTGTGTGGTGTGTATGTGCGCCGGTTTAGTTCATGT
GTTTTTGTAAATGGGCGGGTATGACTGATTTTTCTATCGAAAGAAACCAT
TCTGGTAAGGGAGGCAAGGAAGGGGGAACGCCGGAGGAAAGGTATAAGTA
TGGGGTTGATGAGGGGGGCGCACGGAGAGGTGTGAAAAAACAGTCGGTTC
CGCATGTGTCAAAATTATGTTTGACTTGATCTATCAATTCAACCGTGGGA
TTGCTTTTGCACGCGCGCGCGCGAGGAAACGTACGTCGTACATCTGATAA
CAAACATCGGGGCTGTTTTATTCGAGTATTTTTCTCCTCGCGGGATGATC
GTACACGACGATATGTATGATACGACATGGCTGCAAAGACGAGAGTACTC
TCCCTCCCTGTTCCATCCCATGCAAATAAAAGGTTTTCATTCGCGCTCCA
TCCAAACAAAGCCCCGCTTTTTTCGTTCATCGGGATGACGCCAGGTGGGC
GGAGTCACTGCAGGAAGCGTAC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig197:324081..331302- >mRNA_P-littoralis_Contig197.79.1 ID=mRNA_P-littoralis_Contig197.79.1|Name=mRNA_P-littoralis_Contig197.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig197:324081..331302- (Pylaiella littoralis U1_48) ATGTTGGGCTTGGAGCCGCCTTTGACTACCACCAAACAACAGCGGCAGCG GCAGCCACCGGGAGAGGAGAGCGGCCGTGAAGACGGGAGGAACGTCGTCG GCGTCGCAATCGATGAGGGTATTCACCAATCAAGTAGCCACGAGGCGTTT GACGTTTCTGTGCTGTGCACGGCGTATGCAGATGTCAACGCCCTCTTCGA GCCCCACAGCCGAGTGGAATCAAGGCTGGGGGGAGCTCTGCTGTGGAATG TGAACAAGACGATCTGGAACATCCACTCGGTAAGTCAGGCGTTCGGAAGC GGCGCCATACCTCCGGCTGCGCACGAATTCGCCGCGAGAGTCCCCTCGAA AGAAGAGGGAAAGGAGGGAAAGACGCCCCCACCGAGCTTTCTCACCGTCT ACGGGTCGCATGTGGGAAGGTGGGCGGAGTCACTGCAGGAAGCGTAC back to top
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