mRNA_P-littoralis_Contig195.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.96.1
Unique NamemRNA_P-littoralis_Contig195.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig195.96.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.800e-16
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   85 WVQGDVLRMMMISPTWGYAFNAHEMSKFLRLHIDDVRAVLQISRSGHCTTQHEHDMFLSTFGVSRHTHDNKPCWSLAGVG 324
            WV+ D +  M+ +PTWGY  N  E+S+ L L  DD+RAVLQ   +     +HE  +FLSTFG+SR  HD KP W L G G
Sbjct:  102 WVRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARKSAIEHE--LFLSTFGISRGCHDGKPAWHLLGCG 179
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BLAST of mRNA_P-littoralis_Contig195.96.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.110e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   97 DVLRMMMISPTWGYAFNAHEMSKFLRLHIDDVRAVLQISRSGHCTTQHEHDMFLSTFGVSRHTHDNKPCWSLAGVG 324
            D +  M+ +PTWGY  N  E+S+ L L  DD+RAVLQ   + + T +HE  +FLSTFG+SR  H   P W L G G
Sbjct:  172 DAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARNSTIEHE--LFLSTFGISRGWHAGNPAWHLLGCG 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0V0_9PHAE4.800e-1648.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ4_ECTSI7.110e-1347.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:422822..423725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.9343452-UTR-P-littoralis_Contig195:422821..4228961680789937.9343452-UTR-P-littoralis_Contig195:422821..422896Pylaiella littoralis U1_48UTRP-littoralis_Contig195 422822..422896 +
1680789937.9463747-UTR-P-littoralis_Contig195:423476..4235091680789937.9463747-UTR-P-littoralis_Contig195:423476..423509Pylaiella littoralis U1_48UTRP-littoralis_Contig195 423477..423509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.9567614-CDS-P-littoralis_Contig195:423509..4237251680789937.9567614-CDS-P-littoralis_Contig195:423509..423725Pylaiella littoralis U1_48CDSP-littoralis_Contig195 423510..423725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.96.1prot_P-littoralis_Contig195.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 423510..423725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.96.1

>prot_P-littoralis_Contig195.96.1 ID=prot_P-littoralis_Contig195.96.1|Name=mRNA_P-littoralis_Contig195.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MMMISPTWGYAFNAHEMSKFLRLHIDDVRAVLQISRSGHCTTQHEHDMFL
STFGVSRHTHDNKPCWSLAGVG
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mRNA from alignment at P-littoralis_Contig195:422822..423725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.96.1 ID=mRNA_P-littoralis_Contig195.96.1|Name=mRNA_P-littoralis_Contig195.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=904bp|location=Sequence derived from alignment at P-littoralis_Contig195:422822..423725+ (Pylaiella littoralis U1_48)
ACCAGAGACGGGAGGCAGTAGTTCTGCCCCCTTGGGCGAGGACATCCAAC
CCGGTCCAGAGGTCATGCAACAAAGGTACACTTGGTACACGATACAGCTG
AGCATAATTTTTTTGGAGTTTATACGCTCCCATGTAGTTACAGTACCAGT
TATCGGTACCGTAATTGTCTTCAGCGTCTGCGTACAGCAGCAGCAGGAGA
AAAATAATTTGCCTGCTCTTTCTGTACGGCAGTATTTATACAATAATCTG
GTGCTGTTATCAAATTAACATTACAGCGACCATCACACTTGCCCACATTA
CAACCTTCAACTTTAATCACCTATGAACTTTGATTTACTAGGAAAAGCAC
AACGTCACGCTACAGTATTATCCCATTGCTCCAAAAGTTTGGGGTCATGG
TGACAAATGAATTTTTTATGGCAGGGTGTCTCGGGATATGACTCGGGGGT
TCCCCAAATATAGTTAGCACTAAATACCCAGATTGGAAGGTACAGGGTGC
TCTGGGGAGCGGTGCTGCCGTCTGCCCCGAAATTATTTAGAACTATATTT
GGTTTTGTCCTCTCGCTAATCCGCTGTCCCTCTTCCCAATTGTCTTTTTA
CGGGCGTAATTTACGCTATGTTTCTGTTTTTTCGTGGTGTTGCCCTACCT
TTAAGGGTGGCGTGTGGGTCCAGGGCGACGTTCTACGGATGATGATGATC
TCCCCGACCTGGGGCTACGCTTTTAACGCGCACGAGATGTCTAAGTTTCT
TCGGTTGCACATTGACGACGTCCGTGCAGTTCTACAAATTTCGCGCTCAG
GACACTGTACCACTCAGCATGAGCACGACATGTTCCTATCCACTTTTGGG
GTTTCACGTCATACGCACGACAACAAGCCCTGCTGGAGCCTTGCAGGGGT
GGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:422822..423725+

>mRNA_P-littoralis_Contig195.96.1 ID=mRNA_P-littoralis_Contig195.96.1|Name=mRNA_P-littoralis_Contig195.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig195:422822..423725+ (Pylaiella littoralis U1_48)
ATGATGATGATCTCCCCGACCTGGGGCTACGCTTTTAACGCGCACGAGAT
GTCTAAGTTTCTTCGGTTGCACATTGACGACGTCCGTGCAGTTCTACAAA
TTTCGCGCTCAGGACACTGTACCACTCAGCATGAGCACGACATGTTCCTA
TCCACTTTTGGGGTTTCACGTCATACGCACGACAACAAGCCCTGCTGGAG
CCTTGCAGGGGTGGGG
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