mRNA_P-littoralis_Contig195.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.88.1
Unique NamemRNA_P-littoralis_Contig195.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig195.88.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.200e-39
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 VSLWLLPVGISVVTRADILPVDGVMETLEEVAGEEAAGILGEIDLGGRRPSGQDLVDKVNGQEQVFGTAYAELAKWVQQKED-------DAQTAG 264
            VSLWLL VGISVVTRAD+LPVDGV+ETLEEVAGEEAAGILGEIDL GRR SGQDLVDKVN QEQVFGTAYAELAKWVQQ+ED       DAQTAG
Sbjct:  996 VSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQDLVDKVNAQEQVFGTAYAELAKWVQQREDKIGDGGDDAQTAG 1090
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BLAST of mRNA_P-littoralis_Contig195.88.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.250e-17
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 VSLWLLPVGISVVTRADILPVDGVMETLEEVAGEEAAGILGEIDLGGRRP-SGQDLVDKVNGQEQVFGTAYAELAKW 228
            V+LW + VG+SVV+RADILPVD VM  L EVAGEEAA ++GEID+ G    SGQDLV +V+ + +VFG+A+ +LA W
Sbjct:  816 VALWTVRVGVSVVSRADILPVDDVMGKLREVAGEEAATMIGEIDVRGHCSLSGQDLVQEVDRKAEVFGSAFNKLADW 892
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE1.200e-3985.26Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE4.250e-1759.74Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:379526..379790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categorysignal peptide
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.6739428-CDS-P-littoralis_Contig195:379526..3797901680789937.6739428-CDS-P-littoralis_Contig195:379526..379790Pylaiella littoralis U1_48CDSP-littoralis_Contig195 379527..379790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.88.1prot_P-littoralis_Contig195.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 379527..379790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.88.1

>prot_P-littoralis_Contig195.88.1 ID=prot_P-littoralis_Contig195.88.1|Name=mRNA_P-littoralis_Contig195.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
VSLWLLPVGISVVTRADILPVDGVMETLEEVAGEEAAGILGEIDLGGRRP
SGQDLVDKVNGQEQVFGTAYAELAKWVQQKEDDAQTAG
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mRNA from alignment at P-littoralis_Contig195:379526..379790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.88.1 ID=mRNA_P-littoralis_Contig195.88.1|Name=mRNA_P-littoralis_Contig195.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=265bp|location=Sequence derived from alignment at P-littoralis_Contig195:379526..379790- (Pylaiella littoralis U1_48)
GTGTCTCTCTGGCTTCTTCCCGTGGGCATCTCTGTCGTTACTCGCGCGGA
TATTTTGCCGGTGGACGGTGTGATGGAAACTCTCGAGGAGGTTGCTGGGG
AGGAGGCAGCCGGAATACTCGGGGAGATCGACCTCGGAGGCCGACGCCCC
AGCGGCCAGGATCTTGTAGACAAGGTCAACGGCCAGGAGCAAGTATTCGG
CACGGCTTACGCCGAATTAGCTAAGTGGGTGCAGCAGAAGGAGGACGATG
CACAAACTGCAGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:379526..379790-

>mRNA_P-littoralis_Contig195.88.1 ID=mRNA_P-littoralis_Contig195.88.1|Name=mRNA_P-littoralis_Contig195.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig195:379526..379790- (Pylaiella littoralis U1_48)
GTGTCTCTCTGGCTTCTTCCCGTGGGCATCTCTGTCGTTACTCGCGCGGA
TATTTTGCCGGTGGACGGTGTGATGGAAACTCTCGAGGAGGTTGCTGGGG
AGGAGGCAGCCGGAATACTCGGGGAGATCGACCTCGGAGGCCGACGCCCC
AGCGGCCAGGATCTTGTAGACAAGGTCAACGGCCAGGAGCAAGTATTCGG
CACGGCTTACGCCGAATTAGCTAAGTGGGTGCAGCAGAAGGAGGACGATG
CACAAACTGCAGGC
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