mRNA_P-littoralis_Contig195.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.87.1
Unique NamemRNA_P-littoralis_Contig195.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig195.87.1 vs. uniprot
Match: Q8QNC6_ESV1K (EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC6_ESV1K)

HSP 1 Score: 189 bits (479), Expect = 4.100e-55
Identity = 121/270 (44.81%), Postives = 157/270 (58.15%), Query Frame = 1 
Query:    1 SRLKKAATRSR-PSVWCELSQLQARRLILNVGLGRDLVPRDLPTAKNPNRLCETLTSMLKASCVRGWKVTKFISEGSFGHVFRALRNDGTRAVIKVRLVPRRK*RAKPLLKRITTVRVLPP---RY*GKKTIEKIGTRATERPRIR**RHRVSPSGPFGPHHRD-GGDC---------------WRYR*LATSPKSKEQLGQLMLKKVYLLDSFRMHKLTHADLHLWNLGYVYTDASKKHLKLMPIDFGRSSKGKLTRSWRLAASCASLA 750
            ++ KKAA R + P VWC+LSQ++ARRLIL V LGRD+ P D+ TAKNPNRLCETLT ML  SC+RGW+VTKF+S G++GHVFRA+  +GT A +KV+    ++ R +   +R    R L P   RY   K   ++G  A ER      R     S PF        G+                W  R      KS +QL +   +   L+ +FR H LTH DLHL N+GYVYTDASK++++LMPIDFGRS  GK   S  + A   +LA
Sbjct:    2 AKAKKAAPRPKQPKVWCDLSQIEARRLILKVALGRDIGPGDVATAKNPNRLCETLTKMLACSCMRGWRVTKFLSAGAYGHVFRAVHTNGTSAALKVQTGDAKRLRGELSAQRAFHKRGLAPKIIRYCSFKPKTRLGMVAHERLN----RAVQDKSVPFQTEDESPAGNLVHVIIMEEIAGVLGQWLRR-----EKSNQQLHKTAFEITKLMVAFRNHGLTHGDLHLNNIGYVYTDASKRYMRLMPIDFGRSYVGKAFTSLEVGALMRTLA 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNC6_ESV1K4.100e-5544.81EsV-1-156 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:377686..378468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.6222959-CDS-P-littoralis_Contig195:377685..3779191680789937.6222959-CDS-P-littoralis_Contig195:377685..377919Pylaiella littoralis U1_48CDSP-littoralis_Contig195 377686..377919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.642011-UTR-P-littoralis_Contig195:377919..3784681680789937.642011-UTR-P-littoralis_Contig195:377919..378468Pylaiella littoralis U1_48UTRP-littoralis_Contig195 377920..378468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.87.1prot_P-littoralis_Contig195.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 377686..377919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.87.1

>prot_P-littoralis_Contig195.87.1 ID=prot_P-littoralis_Contig195.87.1|Name=mRNA_P-littoralis_Contig195.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MLKKVYLLDSFRMHKLTHADLHLWNLGYVYTDASKKHLKLMPIDFGRSSK
GKLTRSWRLAASCASLAKISCERRGDG*
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mRNA from alignment at P-littoralis_Contig195:377686..378468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.87.1 ID=mRNA_P-littoralis_Contig195.87.1|Name=mRNA_P-littoralis_Contig195.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig195:377686..378468- (Pylaiella littoralis U1_48)
AGCAGGCTCAAGAAGGCAGCGACTCGCTCACGGCCGAGTGTGTGGTGCGA
GCTGTCGCAACTCCAGGCTCGTCGTCTGATTCTCAACGTGGGCCTTGGTC
GCGATCTCGTGCCTCGAGACCTACCCACCGCGAAAAACCCCAACAGGCTG
TGTGAAACGCTGACGAGCATGCTCAAAGCTTCATGTGTCAGAGGCTGGAA
GGTTACGAAATTCATCTCCGAGGGATCGTTCGGCCACGTCTTCCGCGCGC
TGAGAAATGATGGCACCAGAGCAGTAATCAAAGTCAGATTGGTTCCGCGA
AGGAAATAAAGGGCGAAGCCGTTGCTCAAAAGAATTACCACGGTAAGGGT
CTTGCCCCCAAGATACTAGGGTAAAAAAACGATTGAGAAAATCGGCACAC
GAGCGACTGAACGACCTCGAATACGATGATGACGACATAGAGTATCACCC
TCCGGGCCATTTGGTCCACATCATCGTGATGGAGGAGATTGCTGGCGTTA
TCGGTGACTGGCTACATCCCCAAAGTCAAAAGAACAGCTCGGACAGCTTA
TGCTCAAAAAAGTTTATCTGTTGGATTCTTTCAGAATGCACAAACTGACA
CATGCCGATCTACACTTGTGGAACTTGGGGTACGTGTACACCGACGCGTC
GAAGAAACATCTGAAGCTGATGCCGATTGATTTTGGGAGGTCTAGCAAAG
GAAAGCTTACACGGAGTTGGAGGTTGGCTGCCTCTTGCGCATCCTTGGCA
AAAATTTCATGTGAAAGGAGAGGGGACGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:377686..378468-

>mRNA_P-littoralis_Contig195.87.1 ID=mRNA_P-littoralis_Contig195.87.1|Name=mRNA_P-littoralis_Contig195.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig195:377686..378468- (Pylaiella littoralis U1_48)
ATGCTCAAAAAAGTTTATCTGTTGGATTCTTTCAGAATGCACAAACTGAC
ACATGCCGATCTACACTTGTGGAACTTGGGGTACGTGTACACCGACGCGT
CGAAGAAACATCTGAAGCTGATGCCGATTGATTTTGGGAGGTCTAGCAAA
GGAAAGCTTACACGGAGTTGGAGGTTGGCTGCCTCTTGCGCATCCTTGGC
AAAAATTTCATGTGAAAGGAGAGGGGACGGATGA
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