mRNA_P-littoralis_Contig195.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.85.1
Unique NamemRNA_P-littoralis_Contig195.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig195.85.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 9.150e-30
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  113 KCFADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEE 292
            K  ADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEE
Sbjct: 1178 KFLADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEE 1237
[Close]
BLAST of mRNA_P-littoralis_Contig195.85.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.900e-29
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  113 KCFADLVDENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEE 292
            K  ADLV+ENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYP+KYEE
Sbjct:   24 KFLADLVEENGIKPIMAKIGDAVRRKEVIEMCLDVLHDGGGATIGKRDDERHLYPDKYEE 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE9.150e-3096.67PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KG30_9PHAE5.900e-2993.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:374945..375236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size293
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.5278893-UTR-P-littoralis_Contig195:374944..3749751680789937.5278893-UTR-P-littoralis_Contig195:374944..374975Pylaiella littoralis U1_48UTRP-littoralis_Contig195 374945..374975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.5416825-CDS-P-littoralis_Contig195:374975..3752361680789937.5416825-CDS-P-littoralis_Contig195:374975..375236Pylaiella littoralis U1_48CDSP-littoralis_Contig195 374976..375236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.85.1prot_P-littoralis_Contig195.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 374976..375236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.85.1

>prot_P-littoralis_Contig195.85.1 ID=prot_P-littoralis_Contig195.85.1|Name=mRNA_P-littoralis_Contig195.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MTVFPRSTVSDLHDGKKTSGIFPRTTLKCFADLVDENGIKPIMAKIGDAV
RRKEVIEMCLDVLHDGGGATIGKRDDERHLYPEKYEE
back to top

mRNA from alignment at P-littoralis_Contig195:374945..375236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.85.1 ID=mRNA_P-littoralis_Contig195.85.1|Name=mRNA_P-littoralis_Contig195.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=292bp|location=Sequence derived from alignment at P-littoralis_Contig195:374945..375236+ (Pylaiella littoralis U1_48)
CCACTTTTGACGGTTCACGGTACCGCCGAATATGACGGTATTCCCGCGTA
GTACCGTATCCGACCTACACGACGGGAAAAAAACCTCGGGAATTTTCCCG
AGGACTACCCTGAAATGTTTTGCCGACTTGGTGGACGAGAATGGCATCAA
GCCCATCATGGCCAAAATCGGGGACGCCGTTCGGCGGAAGGAAGTGATCG
AGATGTGCTTGGACGTGCTTCACGACGGCGGGGGGGCTACCATCGGGAAG
CGCGATGACGAGAGGCACCTGTATCCCGAGAAGTACGAGGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig195:374945..375236+

>mRNA_P-littoralis_Contig195.85.1 ID=mRNA_P-littoralis_Contig195.85.1|Name=mRNA_P-littoralis_Contig195.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig195:374945..375236+ (Pylaiella littoralis U1_48)
ATGACGGTATTCCCGCGTAGTACCGTATCCGACCTACACGACGGGAAAAA
AACCTCGGGAATTTTCCCGAGGACTACCCTGAAATGTTTTGCCGACTTGG
TGGACGAGAATGGCATCAAGCCCATCATGGCCAAAATCGGGGACGCCGTT
CGGCGGAAGGAAGTGATCGAGATGTGCTTGGACGTGCTTCACGACGGCGG
GGGGGCTACCATCGGGAAGCGCGATGACGAGAGGCACCTGTATCCCGAGA
AGTACGAGGAA
back to top