mRNA_P-littoralis_Contig1036.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1036.6.1
Unique NamemRNA_P-littoralis_Contig1036.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1036.6.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.960e-8
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   76 GPKTSVTTSQLQPLTRTLLTVMAEDMSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQAR 276
             P  S   ++L P  + LL  +AE M E  LG A    E ++++LDPRFK CC+S C++GG+AL+ R
Sbjct:  614 APFCSKRVAELTPEAQALLEAVAEGMEESGLGRAREDTEAVSMLLDPRFKQCCASTCVDGGSALKLR 680
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1036.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G031_ECTSI3.960e-843.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1036contigP-littoralis_Contig1036:5759..6106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size349
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789372.0530703-CDS-P-littoralis_Contig1036:5758..61061680789372.0530703-CDS-P-littoralis_Contig1036:5758..6106Pylaiella littoralis U1_48CDSP-littoralis_Contig1036 5759..6106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1036.6.1prot_P-littoralis_Contig1036.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1036 5759..6106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1036.6.1

>prot_P-littoralis_Contig1036.6.1 ID=prot_P-littoralis_Contig1036.6.1|Name=mRNA_P-littoralis_Contig1036.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
INDFFVLHHSVSAPDQDIRCLDPWDGPKTSVTTSQLQPLTRTLLTVMAED
MSERELGSATLSPETINLVLDPRFKSCCSSVCLNGGAALQARVAVDVEGA
FDYFLGYTKAQSEEQG
back to top

mRNA from alignment at P-littoralis_Contig1036:5759..6106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1036.6.1 ID=mRNA_P-littoralis_Contig1036.6.1|Name=mRNA_P-littoralis_Contig1036.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1036:5759..6106+ (Pylaiella littoralis U1_48)
ATCAACGACTTCTTCGTCCTGCACCACTCGGTCAGCGCCCCAGACCAGGA
CATTCGATGCCTGGATCCCTGGGACGGCCCCAAAACATCAGTCACCACGA
GCCAGCTTCAACCGCTCACGCGGACACTACTGACGGTAATGGCGGAGGAC
ATGTCCGAGAGGGAGCTGGGGTCTGCGACGCTGTCGCCCGAGACGATCAA
CCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCTCGAGCGTGTGCTTGA
ACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTCGACGTCGAGGGGGCC
TTCGACTACTTCCTTGGGTACACGAAGGCGCAGAGTGAGGAACAGGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1036:5759..6106+

>mRNA_P-littoralis_Contig1036.6.1 ID=mRNA_P-littoralis_Contig1036.6.1|Name=mRNA_P-littoralis_Contig1036.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1036:5759..6106+ (Pylaiella littoralis U1_48)
ATCAACGACTTCTTCGTCCTGCACCACTCGGTCAGCGCCCCAGACCAGGA
CATTCGATGCCTGGATCCCTGGGACGGCCCCAAAACATCAGTCACCACGA
GCCAGCTTCAACCGCTCACGCGGACACTACTGACGGTAATGGCGGAGGAC
ATGTCCGAGAGGGAGCTGGGGTCTGCGACGCTGTCGCCCGAGACGATCAA
CCTGGTGCTCGATCCCCGCTTCAAGTCCTGCTGCTCGAGCGTGTGCTTGA
ACGGGGGCGCAGCACTTCAAGCGCGAGTGGCCGTCGACGTCGAGGGGGCC
TTCGACTACTTCCTTGGGTACACGAAGGCGCAGAGTGAGGAACAGGGT
back to top