mRNA_P-littoralis_Contig195.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.45.1
Unique NamemRNA_P-littoralis_Contig195.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:195000..199922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size595
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789935.865643-UTR-P-littoralis_Contig195:194999..1951211680789935.865643-UTR-P-littoralis_Contig195:194999..195121Pylaiella littoralis U1_48UTRP-littoralis_Contig195 195000..195121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789935.8748527-CDS-P-littoralis_Contig195:195121..1953521680789935.8748527-CDS-P-littoralis_Contig195:195121..195352Pylaiella littoralis U1_48CDSP-littoralis_Contig195 195122..195352 +
1680789935.8853347-CDS-P-littoralis_Contig195:199682..1999221680789935.8853347-CDS-P-littoralis_Contig195:199682..199922Pylaiella littoralis U1_48CDSP-littoralis_Contig195 199683..199922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.45.1prot_P-littoralis_Contig195.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 195122..199922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.45.1

>prot_P-littoralis_Contig195.45.1 ID=prot_P-littoralis_Contig195.45.1|Name=mRNA_P-littoralis_Contig195.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MIAALRQHCPERAKVLPHSVFSDLISRSPSLRKGWVFRMLIYTRCFTFSS
FTSSASLRTSLLSLPLSGPRWDRSPSKVAPTSSRRAGRYEQKLCGVFSFF
GQEEGKARQGHKSTPLQSSSAAGGGEWQRLVVSHHAGLRATTTTGRSEKH
SRALYRT
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mRNA from alignment at P-littoralis_Contig195:195000..199922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.45.1 ID=mRNA_P-littoralis_Contig195.45.1|Name=mRNA_P-littoralis_Contig195.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4923bp|location=Sequence derived from alignment at P-littoralis_Contig195:195000..199922+ (Pylaiella littoralis U1_48)
GTTTTATCTCACGCCTGCCTGTGATTTGGATGGAGGGGTCTATCATCAAT
TTGCCAGCAATTTACCAAGGCCAGGATGCCAGAGGAACGATGTGCAGATG
TTGTGCAGCTCGTGACGGATGAATGATTGCGGCACTCCGCCAGCATTGTC
CCGAACGGGCAAAGGTTCTGCCGCACTCTGTATTTTCTGATCTGATCTCC
CGATCTCCTTCCCTTCGGAAGGGATGGGTGTTTCGAATGCTTATTTACAC
ACGCTGTTTTACATTCTCCTCTTTCACTTCGTCTGCCTCTCTCCGCACCT
CTCTTCTCTCCCTTCCCCTCTCCGGTCCTCGCTGGGATCGGTCGCCGTCG
AAGGTGAGTCGAGCACCTTAGGCTCATTTTTGTTCTCCTTCTTCAGAGCA
CTTCTCTTGCTCCCTCGCTGTTGTTTTCCTTCGTTCGCTCGCTTTCAACA
TCTCACCTCACAGTCATCACCCATCACGACCGACCGCTGTTGCGGGAGGG
GGGAAGGCACTCGCTCTGATTGGATTGGTGCCCGCCTGCACCCAGATTGA
GTGTTTGCGACGCACGGGATGGTCACATCGAAACCCACAGGCTTTTTGCA
GTCCCGCAATCTGCTGCTGTATTAATTGAAGCGCAGATTCTCTCAGAGTC
TACCACGCCATGCATGTGATGATGAACAATGTTGATCCATCCGGTGATGA
ATGATACCGGTATGTGATACTCCGGAGTATCCAACTTGAGGTTTGGGATA
CTGCTGCACTGCTGCTGTAGCCGTGGTGGGTACTGTGTACGTACAGCAGG
ACCGGTATTTTGGGGAAGAATACCCTAAAGATGACAACGATGCACCATCT
TCCTGGTTGTGGAACCACGTCAAAGTACTTGTATGATTTGATACCAGGTA
CAGCATGCACATGTACCCTCCAACGAGCGAGTGGTAGAATGGGGAGCTTC
GCGTGGCAAACCACCCCCCCGTTCGTCATACGAAGTACATGCGGATGGAT
GCGCCCGGTGCTGTCCATGGAGGCCGCGAGTTTCAGCGGCAACCCCTATG
CGTTGCTATTGTGGTGACTTGTCGTTCAACGAACTTCACGCGTTGTATTG
GTGTTCGTCATTATTCTGTCTTACGGTAGGTATCATAACTTGAGAGGCAT
GGTTTTGACCCTTTTTTTTTTCTTCTTTTTTTGGATTGGTTGGTGATCCT
CACCATCATATTATTCGGTCCGTGCATAGTAATCCGTCTATAATATTGGA
GTAATTTGTTTCGAGGATATCTGTTGAACAAAACAAAACTGCTGCAACTC
TGAAACAGCAACGGCCGTGACCGCCCGCGTGTCGAGCTGCGTCGGTACAG
CAGTAGCCGTTGAGTTTTATTTTAGGGCAAACGCCAAAAAGCGGTATACC
GCCATGGTTCCGCGCCACAAAGCGGTACACCAAATTACACCTTGGCATCT
GAGCCCCGTTCGCGTCGCTGATTGGCCAACTAAGGCTCGTATCGCTTTCT
GGCACCAGCAACCGGCGGTATATCACTTTTGGGCTTCTCAGGTCGGCCTT
CACCGCTTTTTGGCGTATCCCATACCGCTTTCTGGCGTGATATTATTCCG
CAGACCATTCGCCGAACAGCCCTCGCTACTTCTATATCACACGTCACACG
ATCGATCAACCAAGGGAATGGATCAACCAAGAAGCCACACAGCTCCACGC
GTACCCCCACACCCCACACCGATCCCTGCAGGATGGTTGGTGCCGATGTG
CGTGAGAGAAGACCAAATCGATGACCAATTATACGAGTACAAGGAAGGGG
AGTGTAACGCTCCAAAACGAAGTATCAAATTTGTCCACACTGAAATCGAT
GCCAACCAGGTCTACCAATCAATGCGCAAAGGAGGTACAAGTTGTAGGCA
ATTGCATGTAGGTAGGTAGGGTGGGAGGATGTAAACACCGAAGCGTCTGT
CCAATCAGCGGTGCGTCATTAAGGTGTGAAGATGTTTGCCCTCATGTGCT
TAAGACGCCGCCAGGGCGGGGTGGCGATCTCGCGTGCGCCATCACTGGCA
CGTATGTATGCACGCGTGCCCTCTGTGCGATCATGAGGAGGCACAGGTCG
CCAAACCGACACCTTACGAGACGCTAGGGGCATCCACAACCTCAGGAGAT
TGTGGAGATGGTTGGGAGAGCGATGTCAACCTCAAATAGTGATTGTCGTG
CTTCGTGCACGAGCATAGCTGCAACGAACCGGCGATCAGAGAGTCATTTG
TGCTCCGTACAACATGGCTATTAATTTTGTTTTAAAAAATAATACAAGCC
GAATCGAAAAAACATTACTGAAAGTACAAACCATGTTGGATGGAGGTTGC
ACAAATGACCTTCTGATCGCCGGTTTGTTCCAACTTTGCTTGTGCACGAA
GCACAATTATTTGAGGTTGACATCGCTCGCCCAACCATCTCCACAATCTC
CTGAGGTTCGGGATGCCCCCCAACGTCTCGTAAGGTATCGGTTTGGCCAT
CTGTGGGGTGCCCGGGGTCACGGCTTTGACAGCAGTGCATCGATATTGGT
GATCGATTTGGTATTATTCTGTCACGCACATCGGCACCAACCATCCTGAA
GGGATCTGTGTGGGGTGTGGGGGTATGCGTGGAGCTGTGTGGCTTTCTTG
GTTCATCCATTCCCTTGGTTGATCGATCGTGTGACGTGTGATATAAAAGT
AGCGAGGGCTGTTCGGCGAGTGGTCTGCGGAATATCACGCCAGAAAGCGG
TGTGGGTTACGCCAAAAAGCGGTGAAGGCCGACCTGAGAAGCCCAAAAGT
GATACACCGCCGGTTGCTGGTCCCAGAAAGCGATACGAGCCTTAGTTGGC
CAATCAGCGACGCGAACGGGGCTCAAATGCCAAGGTGTAATTTGGTGTAC
CGCTTTGTGGCGCGGAACCATGGCGGTATACCGCTTTGTGGCGTTTGCCC
TTTATTTTATTTTTCGGGAAAGATGCAACACTTTTGGCCAAAATGTTTAC
CCCCGAAGAAAGTGGCCTGGATTGACCCATGGCACCGAAACACACAGGAC
TCTGTTGACAAACAAACATCAGTAGTGCTGATGACCATTTTTAATTTACT
CGGCGACCCCGTTGAAAAACGCACTCAGCCACAGGCTACAGTAGTTGGAT
TTAAGATTAAGGCTGGGCTGATTTGTCCTGTAGGGTCATAGCCGTTGCAG
GTAGGCACTGGGCACACGTAGATCGGGGTTCAAATAAATACAACCCGACC
CAGACGATACCGCCATTGGTGACTCCGCTTAGGGATCAGCTGTAAAGATG
AAACTTTGGGTGCTGTATGTAAACACCATGGCACTGACCAATGTGGGGTT
CCAGCTCTTTGGCGTTGGGTGGGCGTGCGAACGACTTGCTTTAACGTAGG
GAAGTCATGGGCCTGCATATTATACATTCTCCGAGACCGGAGCTTTTTTT
CGTTATTTTCGATGGGTGGATCTTTTTTGAGAGAGCAACGACAACAACAA
ACAGCAGATAGATGTAGGCGGCTCATCACAACCTATCCCTCCTCCACAAG
AAGAGTAGGCCGCACACCGCCAATACCGCTTGCACCTCGCAGACAGCCAT
CACCCCGGGATGACGGGATGCCGAGAATGTGATACACGTATCATAGCTTA
TTCCTGCAGGGAGGAAAGTGTGGCGGCGGTGTGTGAGGACGTCCTCCGTC
TTGTCTCGCATTTTTTTTCGTGTTTTGCTTCTTTGTCCATCATGGGGGTA
CTGCGGTGTTCCTGTGCTCTGCTGACTGATGCCCAGAGAGACAGCAGTCT
CACGTGATACAATATCCAGTATTTTAATACTTCGAAGTGCACAGAGCATG
ATCCTTTCCATCGATGTATCTGTATCTAGCTGATATCACAGAAGGGGGAG
ACCGAGACTTTTGAGGCAGGCAGGCGAGCAGTTTGTAGTAGCAGCAGCAG
CAGCAGCAGCAGCAGTATACAGCCCGTCGAGAGCGCCTAGGCCACGAAAC
CCGTGGCGATGGCGCTCGTTCAGGCTGTACCTAAAGTATTCTGCATGGCT
AGGGTTCCGGGTGGCGTGGTTGTTTCACGACACTTATTTCTGAGGTCATG
ATTCAGAAACAAGCTCCAAACAACGCTCCGCGTTTTTTAATTCTTACAAA
CACACCAATCAATGTGTTCGCCTCTCCCCAGACGAGGGTCTGGAGTAGAT
ATTGCATCGAAAACAAATATTAAAAGACATCTAAAGTACCAGTGTTTCTA
TAACTCATCAGATAATGTACCGTTGCAGCTCCCCTGAAGTTTTTAGGCTC
TTATTTCCAAATCTGAAAGCGAGGTCTCAGAAGTAAGACAGGACTGTCGC
GTCCGGTCAGGGGTACGTTGCTTATCTCTTTAAATCTGAAAGCTTAATTC
TGAAACTTGTTTCCCACTCCGAAATGTGTTGGGCAGTAGCAGCTGCTTGA
GCATGGCGAGACCTTCAAAATCTCTGTCGTCCGTCAAGAAGCTGTAGCTC
TGCTGTTCAACCGCAGCAAGAGCAGCATTAGCATTAGCAGCATAAGCAGC
AGCACCAGCAGCATCATGTTGCAGCAGCATTACACCACGTACGGCGTCTC
ACCCCCCCCCCCGTTTCTAAACATGCTCTGAATGCGTGAACATTTCTCGC
GCCGGCAACACCAATGTCCTCTGTCGCCGGCAGGTCGCACCAACAAGCAG
CAGGCGGGCAGGGCGCTACGAGCAAAAGCTCTGTGGAGTTTTTTCGTTTT
TTGGTCAAGAAGAGGGGAAGGCCAGACAGGGGCACAAAAGTACGCCTCTG
CAAAGCAGCAGTGCAGCGGGCGGTGGTGAGTGGCAGCGGTTGGTAGTTTC
GCACCACGCCGGACTCCGGGCGACGACGACTACCGGTAGAAGCGAAAAAC
ATTCAAGAGCGCTATATCGTACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:195000..199922+

>mRNA_P-littoralis_Contig195.45.1 ID=mRNA_P-littoralis_Contig195.45.1|Name=mRNA_P-littoralis_Contig195.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig195:195000..199922+ (Pylaiella littoralis U1_48)
ATGATTGCGGCACTCCGCCAGCATTGTCCCGAACGGGCAAAGGTTCTGCC
GCACTCTGTATTTTCTGATCTGATCTCCCGATCTCCTTCCCTTCGGAAGG
GATGGGTGTTTCGAATGCTTATTTACACACGCTGTTTTACATTCTCCTCT
TTCACTTCGTCTGCCTCTCTCCGCACCTCTCTTCTCTCCCTTCCCCTCTC
CGGTCCTCGCTGGGATCGGTCGCCGTCGAAGGTCGCACCAACAAGCAGCA
GGCGGGCAGGGCGCTACGAGCAAAAGCTCTGTGGAGTTTTTTCGTTTTTT
GGTCAAGAAGAGGGGAAGGCCAGACAGGGGCACAAAAGTACGCCTCTGCA
AAGCAGCAGTGCAGCGGGCGGTGGTGAGTGGCAGCGGTTGGTAGTTTCGC
ACCACGCCGGACTCCGGGCGACGACGACTACCGGTAGAAGCGAAAAACAT
TCAAGAGCGCTATATCGTACC
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