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Homology
BLAST of mRNA_P-littoralis_Contig194.124.2 vs. uniprot
Match: D8LRD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD7_ECTSI) HSP 1 Score: 349 bits (895), Expect = 1.790e-102 Identity = 188/284 (66.20%), Postives = 219/284 (77.11%), Query Frame = 3
Query: 381 LREQLQKMVSKKLATLGGELDHAGLLALEALSKLPPPAEVKRA--AAAXXXXAVGGA-----KRVLPPGLEKVKKFSGKDPHGVTDTLNQFHSLVVSALPAASPGTINKALNRDVVFVLEGAALKFFNSLKAGEIEWEPIPVVPEAASGEGAQXXXXXXXXXXGKG-IRPPSTWAELYEAFHDHYLPVAGIARTTEKLFSLSQAPGESVPSLAQRQLGLGQHVNRLIDANGGQTTFWEAITIRLFERALRADLRRLQEAEPPCSTFQESVDRAERNAQNIVGKK 1208
LREQLQK+VS+KLA G ELDHAGLLALE LSK+ P EV ++A +VGG +R+LPPG+EK+ KFSGKDP V+D LN+FHSLVV+ALP +SPGT+NKALNRDVVFVLEGAALKFF SLKAG++EWEP P P + GA+ GK RPPSTWAE+Y AFHDHYLP GIART++ LFSLSQA ESVP+L QRQ+GL H++RLI+ANGGQTTFWEAI IRLFERALRADL+RLQ AEPPC TFQESVDRA+RNA + +K
Sbjct: 3 LREQLQKLVSQKLAAKG-ELDHAGLLALETLSKMAPEGEVDPVGGSSAGGSSSVGGVVDSRPRRILPPGIEKLTKFSGKDPGAVSDVLNRFHSLVVAALPGSSPGTVNKALNRDVVFVLEGAALKFFKSLKAGQMEWEPTP--PPSLQQRGAEAGAGGVQQQAGKPPFRPPSTWAEVYNAFHDHYLPADGIARTSDTLFSLSQAADESVPTLVQRQMGLTNHLSRLIEANGGQTTFWEAIMIRLFERALRADLQRLQHAEPPCPTFQESVDRADRNALRLEKEK 283
BLAST of mRNA_P-littoralis_Contig194.124.2 vs. uniprot
Match: A0A6H5L3E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E1_9PHAE) HSP 1 Score: 343 bits (880), Expect = 1.520e-100 Identity = 187/286 (65.38%), Postives = 215/286 (75.17%), Query Frame = 3
Query: 381 LREQLQKMVSKKLATLGGELDHAGLLALEALSKLPPPAEVKRAAAAXXXXAVGGA---------KRVLPPGLEKVKKFSGKDPHGVTDTLNQFHSLVVSALPAASPGTINKALNRDVVFVLEGAALKFFNSLKAGEIEWEPIPVVPEAASGEGAQXXXXXXXXXXGKG-IRPPSTWAELYEAFHDHYLPVAGIARTTEKLFSLSQAPGESVPSLAQRQLGLGQHVNRLIDANGGQTTFWEAITIRLFERALRADLRRLQEAEPPCSTFQESVDRAERNAQNIVGKK 1208
LREQLQK+VS+KLA G ELDHAGLLALE LSK+ P EV + A GGA +R+LPPG+EK+ KFSGKDP V+D LN+FHSLVV+ALP +SPGT+NKALNRDVVFVLEGAALKFF LKAG+IEWEP P P + GA+ GK RPPSTWAE+Y AFHDHYLP GIART++ LFSL QA ESVP+L QRQ+GL H++RLI+ANGGQTTFWEAI IRLFERALRADL+RLQ AEPPC TFQESVDRA+RNA + +K
Sbjct: 3 LREQLQKLVSQKLAAKG-ELDHAGLLALETLSKMAPEGEVDPVGGSS---AGGGASVGVVDSRPRRILPPGIEKLTKFSGKDPGAVSDVLNRFHSLVVAALPGSSPGTVNKALNRDVVFVLEGAALKFFKLLKAGQIEWEPTP--PPSLQQRGAEAGAGGVQQQPGKPPFRPPSTWAEVYNAFHDHYLPADGIARTSDTLFSLRQAADESVPTLVQRQMGLTNHLSRLIEANGGQTTFWEAIMIRLFERALRADLQRLQHAEPPCPTFQESVDRADRNALRLEKEK 282
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3766 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_002920.1 |
| Cds size | 1908 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789935.4338965-UTR-P-littoralis_Contig194:387454..389194 | 1680789935.4338965-UTR-P-littoralis_Contig194:387454..389194 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig194 387455..389194 - |
| 1680789935.4486458-UTR-P-littoralis_Contig194:390030..390038 | 1680789935.4486458-UTR-P-littoralis_Contig194:390030..390038 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig194 390031..390038 - |
| 1680789935.4853146-UTR-P-littoralis_Contig194:392036..392146 | 1680789935.4853146-UTR-P-littoralis_Contig194:392036..392146 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig194 392037..392146 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789935.461048-CDS-P-littoralis_Contig194:390038..390697 | 1680789935.461048-CDS-P-littoralis_Contig194:390038..390697 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig194 390039..390697 - |
| 1680789935.4741154-CDS-P-littoralis_Contig194:390787..392036 | 1680789935.4741154-CDS-P-littoralis_Contig194:390787..392036 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig194 390788..392036 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig194.124.2 >prot_P-littoralis_Contig194.124.2 ID=prot_P-littoralis_Contig194.124.2|Name=mRNA_P-littoralis_Contig194.124.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=636bp
MKEEERISSDDDDSIHALAGAMNEEEHESSPAGSSSLTSSSLTSSSLTSS SSSSRGSSVSKKDDAPPVAVTPVAVAPAAVAHNKVGEQDFLREQLQKMVS KKLATLGGELDHAGLLALEALSKLPPPAEVKRAAAASGAAAVGGAKRVLP PGLEKVKKFSGKDPHGVTDTLNQFHSLVVSALPAASPGTINKALNRDVVF VLEGAALKFFNSLKAGEIEWEPIPVVPEAASGEGAQQQQQQHGSGGGKGI RPPSTWAELYEAFHDHYLPVAGIARTTEKLFSLSQAPGESVPSLAQRQLG LGQHVNRLIDANGGQTTFWEAITIRLFERALRADLRRLQEAEPPCSTFQE SVDRAERNAQNIVGKKGDSGGINQGKQRDNSCGAVVAEGNGASSVVKDPV AVPAARDGVAASEDDGVLPKHVIKESHDDSERHGRGERSRSIGAGHPGRT AQKKGDDGGKRGEFSATTFANDLGQGAEDTSPDDRRPRAGSRRHIGPDGG GEVRHGNGGSGFAEDRSRSMPGNRNKRSRSRKRGRDWQENYNGGADQPFP PYQHLPDPADTPPCTNAQCKTINRQFHCSNECFFHPELGQRNRERAGRGR KNRPPPPPIWENPVGNNLPWGMPQYGEHGEEEFYY* back to topmRNA from alignment at P-littoralis_Contig194:387455..392146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig194.124.2 ID=mRNA_P-littoralis_Contig194.124.2|Name=mRNA_P-littoralis_Contig194.124.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4692bp|location=Sequence derived from alignment at P-littoralis_Contig194:387455..392146- (Pylaiella littoralis U1_48) CACCGGCCCTGCCATGCATCACACATCACCCATCACCCACCTTACGAAAG
CGCGCGCACGAAGCTGACTTGAGCTACGGATAAGCCAAAGCAAGACTTCC
TCGTGGGCTCATGAAGGAAGAAGAACGAATCAGTAGCGACGATGACGACA
GCATCCACGCTCTAGCCGGCGCGATGAACGAAGAAGAGCATGAATCGAGC
CCAGCAGGGAGCAGCAGCTTGACCAGCAGCAGCTTGACCAGCAGCAGCTT
GACCAGCAGCAGCAGCAGCAGCAGAGGCAGCAGCGTGTCAAAAAAAGATG
ATGCGCCTCCCGTTGCCGTGACTCCCGTGGCCGTGGCTCCCGCGGCCGTG
GCCCACAACAAGGTTGGTGAGCAAGACTTTCTACGCGAGCAACTCCAAAA
GATGGTGTCAAAGAAACTCGCAACACTAGGAGGGGAACTCGATCACGCAG
GGCTCCTGGCACTCGAGGCTCTGTCGAAGCTGCCACCACCAGCCGAGGTC
AAGCGAGCTGCTGCTGCTTCAGGTGCTGCTGCTGTTGGTGGTGCAAAGAG
AGTTCTCCCACCCGGGCTTGAAAAAGTCAAGAAGTTCAGCGGGAAGGATC
CACACGGCGTCACCGATACCTTGAACCAATTCCATTCGTTGGTCGTTTCA
GCACTCCCTGCCGCCAGCCCAGGTACGATCAACAAGGCTTTGAACCGAGA
TGTTGTGTTCGTACTTGAAGGTGCAGCTTTAAAGTTTTTCAACTCACTGA
AGGCAGGGGAGATCGAGTGGGAACCGATTCCTGTCGTTCCGGAAGCGGCA
TCCGGTGAAGGAGCACAGCAGCAGCAGCAGCAGCACGGATCGGGCGGCGG
GAAGGGTATTCGGCCCCCGTCGACATGGGCTGAACTCTATGAAGCGTTCC
ACGACCACTATTTACCGGTTGCTGGCATTGCTCGTACAACAGAGAAGCTG
TTTTCCTTGTCCCAGGCTCCGGGGGAATCCGTTCCGAGTCTTGCGCAGCG
TCAACTCGGATTAGGCCAGCACGTAAATCGGCTGATTGACGCGAACGGGG
GGCAGACCACGTTTTGGGAGGCCATCACGATAAGGTTGTTCGAGCGAGCA
CTCCGTGCCGACCTGCGACGGCTCCAGGAGGCGGAGCCTCCGTGCTCCAC
CTTCCAGGAGAGCGTGGATCGTGCAGAGCGCAACGCCCAAAACATCGTGG
GCAAGAAGGGCGACAGCGGTGGGATTAACCAAGGGAAGCAGCGGGACAAC
AGTTGTGGCGCAGTAGTAGCAGAGGGCAACGGCGCGTCATCTGTGGTCAA
GGATCCCGTCGCTGTGCCTGCCGCCCGGGATGGCGTGGCTGCTTCCGAGG
ATGATGGTGGTGGTTGTGATGATGGTGATGGTGATGGTGATGGTGATGGT
GCTGCTTCGGCTGCTCCTCCTCCTGCTGCTGCTCTTGCGCTCTCGGGAGT
ATTGCCTAAGCACGTCATCAAGGAATCCCATGACGACAGCGAAAGACACG
GACGGGGTGAACGATCGCGCAGCATCGGTGCTGGTCATCCGGGGCGCACA
GCACAAAAGAAGGGCGATGACGGTGGAAAGCGTGGCGAGTTTTCGGCCAC
CACGTTCGCCAACGATTTGGGTCAAGGGGCCGAGGATACCTCGCCTGACG
ACCGACGACCCCGGGCCGGCTCCAGACGGCACATCGGACCAGACGGAGGG
GGCGAAGTGAGACATGGGAATGGCGGCAGTGGGTTCGCAGAGGACCGCAG
CCGCAGTATGCCCGGAAATCGCAACAAGAGGTCGAGAAGTAGGAAGCGCG
GCCGGGATTGGCAGGAAAACTACAACGGTGGCGCAGACCAGCCTTTCCCG
CCCTACCAGCACCTGCCTGACCCTGCGGATACACCGCCGTGCACCAATGC
ACAGTGCAAAACTATCAACCGACAGTTTCACTGTTCCAACGAATGCTTTT
TCCACCCTGAGCTTGGGCAGCGTAACAGAGAGCGTGCGGGCCGTGGGCGA
AAAAATCGCCCCCCCCCCCCCCCGATCTGGGAGAATCCTGTGGGTAACAA
CCTTCCCTGGGGCATGCCCCAGTACGGCGAGCACGGAGAGGAAGAGTTCT
ACTACTGAAGATTTAGGTAAGGGCGCAATAGCAGTGGGTTCACCGTCTGA
CGCTGAAGCACAACTGTGTGGAGTTTTTTTTCCTGTGAAGCCATGGAAGG
GCAGCTCGGAAAGGGAGGGGTGTTATTCTCCCGAAGCATGACGCGTGGTT
GGCTTAAATGGTTATTATTAAGCTACGGTCTTGATGAAAGTATGCCATGT
GGCGAAGATTTGTTCGCAGCTTGGTCAGCCCGCGTCCGACGTGACGTCCA
CCTCTCTTGTTGTCATCAGGGACTGATGTTTGATAAACCATATTGCCCGT
GGCAAATGCCCTGTATCTATTGCTGTATAGCTTCCCCCCACATAGAGAAC
AGTGTAGAAGACTACCGATAAATCGGAAGCATATCAACCAAGTTTTTTTT
CCTTTTCCTGGGTGTGGAGAAGATTACTGTGTGAGTTCAGGCGGCGCAGG
TACTTCCAGGCGCTTGACAGCCCCAGCGATGTTGATGTGCTTTCCACTCA
ACGGTCTTTTAGACGTGCGCATTTTTCTCGGATGTAGCGCACACCGGCAA
GCGCAGCTCGGTGCGGACAATTCCCGCTTGTCAACGCAAATGCCAATGCG
TTGAAGCGAAAACTCGGGGACGTCTGCTGCTGCTGATCCATCGGTTCTGT
CGCAAAATCGATTCGCCTCGATGGGGCTCCAGGGTTTTTGGTCATAACTA
CTGTACCTGCTGTGGTGTGAGATTATGAAGCTCGCGTGCGCAATGACATC
GAAGACTACAAACCGATTTCCCAACGAATGGGTGCACCTTGCCAACAAAA
TTTCACGTGGCGTTCGTACCCTCTTCTCACACCCGCCTACGCTGACATTC
AGGGCGGTTCACCATCGAACACGCGACGTGGAATATGTCGGGCGAGGCGT
GGGCGCTAGCCCTCGGAATTGGGCTTTAAAACAGGAGGGGGTGGAGATCA
GGATGGCTTCGCAACGAAGAGCTGCCATGCGAATTATTGAGCGGTATTGA
CGGTGATGAGTTGTAATTCCTTTTATAAGGTAGGTTGTTAAGAATACATA
GTCGTGGCGGGAGAGACGGGAAGGGCGGCTGCTGTAGGCCGGGCCGGCTT
AAGAAGAGATGGATGTACCGAAGGAGGGCAGGCGATTAAGGTTTAGAAAT
ACTGGGAAACGCGATGTCGGATGGCAGTTTGAGGCGGCCGGACCAACGGG
GCATACGGAATGAGGTATTTCGCTCAACTTATTCGGGATCGTCCTTCGAC
ACAAATCCAGTAAAAACGTCGCGTGACGACCTTGGCTGAGGATGGTGTTG
TCAAAGGAAAAAAGAAAAGAGCGAACACCGCGTTTCCCAGTATTTCTAAA
CCCAAATAAGCCACACGAGGCAATAATGTTCGCATTTTTACGGGGTACAT
TTGACGGAGTAGAGTATTATACTTCGTATCATATGATACTTCGAACTAGT
CAGCGCTATTGCTGCCGCGCTTAGATATATTGGCGTGTTTCACGCCACCA
AATCAGAGAAGCGCATATTTATTGTATTTTTCTAAAAGTAACGCTGAGGC
GTCTGATATCGAAAAAAGTATGTACGACATGTATGCAAAATCGCGCAGTT
CTGCCCGGCGAGTTGATGAGAATAAGATAAACGGCCTTGCCGTTTTCATG
CACCAGCAAAATTTCCGCTTGTTGAGCTTCGTGAAGCGTATAGCTCTTCT
TGTGTGTTGTGTGTTGTCCCAAAAGGAGTGGAAAGAGGTTTCTCGAAACC
AAATTAATCACAAGTGTTGATGTGGCCTACCCCGGAGGGCGGAGGGAATT
AATTGTAGGTGTGCTAGAGAGAGAGAAAAACGGAACAAAGACATCAATTT
TTTCAACCAATCAGAAAGTTCCTTTCAAAAAGATTGGTCAATCGGTTAAT
TGCGAGCCACCTTTCTCTCTCTATCATTAAGGAGTAAAGCAAAAGTACCT
GGTACTTTTCATCAGGCTTGCTGTGCGATCGGCGAATTCGTCGTCGTGGA
TGGGTCGGACCCACAACTAAAAAGTGCAGCAGCAGCACTTGGTTTACAAC
GCATCGACAGCAGTGTTGATTCGATTACGTGTTTTGGTTCCAACAAGTCG
GGGTAGTCTTTCCCTGCGCTGATTGTATCACCTCATTTTGTTTCATTCAG
GCGTACTTTTGCGTGCCCCGCTTTAGACGGTTTTGAGGTGCTGTACAGTC
AGTATTGTCGAGCGTACCACAGTAGTCAAGGGCATATGACTTCCTGATAT
TGGTGACGAAGTCGACGACCAGCAGCAAGTGATTTTGCCGGGCGTAATGG
TGAAGCGAATGTACCCTGCCTGTTGAAAGTTATTTTTGTTCATGTGTTGT
ATGGATAACCAACGAGGGGCTGGTTGGAAATTTCAGGTTGGTCGTAACTG
ACGAAGAAATGGAGATCTTCCTTGTGTTTCTTACAAAAATCGCTTGCCGG
GTTCAAGTTAGCCTGGCTGGCAAACACGCTGCGAGACAGACGAATCCAGA
GGCGAACGTATTCGTTTGGCGCATCTGGACTGCTAAATATTTCACATTTT
GTGATACGTGGGGGTTCGGATCTTGAGCAAAAAGTATGTGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig194:387455..392146- >mRNA_P-littoralis_Contig194.124.2 ID=mRNA_P-littoralis_Contig194.124.2|Name=mRNA_P-littoralis_Contig194.124.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1908bp|location=Sequence derived from alignment at P-littoralis_Contig194:387455..392146- (Pylaiella littoralis U1_48) ATGAAGGAAGAAGAACGAATCAGTAGCGACGATGACGACAGCATCCACGC TCTAGCCGGCGCGATGAACGAAGAAGAGCATGAATCGAGCCCAGCAGGGA GCAGCAGCTTGACCAGCAGCAGCTTGACCAGCAGCAGCTTGACCAGCAGC AGCAGCAGCAGCAGAGGCAGCAGCGTGTCAAAAAAAGATGATGCGCCTCC CGTTGCCGTGACTCCCGTGGCCGTGGCTCCCGCGGCCGTGGCCCACAACA AGGTTGGTGAGCAAGACTTTCTACGCGAGCAACTCCAAAAGATGGTGTCA AAGAAACTCGCAACACTAGGAGGGGAACTCGATCACGCAGGGCTCCTGGC ACTCGAGGCTCTGTCGAAGCTGCCACCACCAGCCGAGGTCAAGCGAGCTG CTGCTGCTTCAGGTGCTGCTGCTGTTGGTGGTGCAAAGAGAGTTCTCCCA CCCGGGCTTGAAAAAGTCAAGAAGTTCAGCGGGAAGGATCCACACGGCGT CACCGATACCTTGAACCAATTCCATTCGTTGGTCGTTTCAGCACTCCCTG CCGCCAGCCCAGGTACGATCAACAAGGCTTTGAACCGAGATGTTGTGTTC GTACTTGAAGGTGCAGCTTTAAAGTTTTTCAACTCACTGAAGGCAGGGGA GATCGAGTGGGAACCGATTCCTGTCGTTCCGGAAGCGGCATCCGGTGAAG GAGCACAGCAGCAGCAGCAGCAGCACGGATCGGGCGGCGGGAAGGGTATT CGGCCCCCGTCGACATGGGCTGAACTCTATGAAGCGTTCCACGACCACTA TTTACCGGTTGCTGGCATTGCTCGTACAACAGAGAAGCTGTTTTCCTTGT CCCAGGCTCCGGGGGAATCCGTTCCGAGTCTTGCGCAGCGTCAACTCGGA TTAGGCCAGCACGTAAATCGGCTGATTGACGCGAACGGGGGGCAGACCAC GTTTTGGGAGGCCATCACGATAAGGTTGTTCGAGCGAGCACTCCGTGCCG ACCTGCGACGGCTCCAGGAGGCGGAGCCTCCGTGCTCCACCTTCCAGGAG AGCGTGGATCGTGCAGAGCGCAACGCCCAAAACATCGTGGGCAAGAAGGG CGACAGCGGTGGGATTAACCAAGGGAAGCAGCGGGACAACAGTTGTGGCG CAGTAGTAGCAGAGGGCAACGGCGCGTCATCTGTGGTCAAGGATCCCGTC GCTGTGCCTGCCGCCCGGGATGGCGTGGCTGCTTCCGAGGATGATGGTGT ATTGCCTAAGCACGTCATCAAGGAATCCCATGACGACAGCGAAAGACACG GACGGGGTGAACGATCGCGCAGCATCGGTGCTGGTCATCCGGGGCGCACA GCACAAAAGAAGGGCGATGACGGTGGAAAGCGTGGCGAGTTTTCGGCCAC CACGTTCGCCAACGATTTGGGTCAAGGGGCCGAGGATACCTCGCCTGACG ACCGACGACCCCGGGCCGGCTCCAGACGGCACATCGGACCAGACGGAGGG GGCGAAGTGAGACATGGGAATGGCGGCAGTGGGTTCGCAGAGGACCGCAG CCGCAGTATGCCCGGAAATCGCAACAAGAGGTCGAGAAGTAGGAAGCGCG GCCGGGATTGGCAGGAAAACTACAACGGTGGCGCAGACCAGCCTTTCCCG CCCTACCAGCACCTGCCTGACCCTGCGGATACACCGCCGTGCACCAATGC ACAGTGCAAAACTATCAACCGACAGTTTCACTGTTCCAACGAATGCTTTT TCCACCCTGAGCTTGGGCAGCGTAACAGAGAGCGTGCGGGCCGTGGGCGA AAAAATCGCCCCCCCCCCCCCCCGATCTGGGAGAATCCTGTGGGTAACAA CCTTCCCTGGGGCATGCCCCAGTACGGCGAGCACGGAGAGGAAGAGTTCT ACTACTGA back to top
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