mRNA_P-littoralis_Contig194.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.83.1
Unique NamemRNA_P-littoralis_Contig194.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.83.1 vs. uniprot
Match: D8LRB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.940e-9
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 2 
Query:    2 NKAAVRIQAAERGRIARHHAAAVRASRAAXXXXXXXXXXXXXELEEAARRLAAATEERNAAR 187
            NKAA RIQA ERGRIARHHAAA  A+R A XXXXXXXXXXXXELEE+ARRLAAATEERNAAR
Sbjct: 1180 NKAATRIQAMERGRIARHHAAAEGAARRAAXXXXXXXXXXXXELEESARRLAAATEERNAAR 1241
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BLAST of mRNA_P-littoralis_Contig194.83.1 vs. uniprot
Match: A0A6H5JIZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-8
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 2 
Query:    2 NKAAVRIQAAERGRIARHHAAAVRASRAAXXXXXXXXXXXXXELEEAARRLAAATEERNA 181
            +KAA RIQA ERGRIARHHAAA RA+R A XXXXXXXXXXXXELEE+ARRLAAATEERNA
Sbjct: 1293 HKAATRIQAMERGRIARHHAAAERAARTAAXXXXXXXXXXXXELEESARRLAAATEERNA 1352
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRB6_ECTSI2.940e-987.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIZ9_9PHAE1.020e-886.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:222210..222548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.8884158-CDS-P-littoralis_Contig194:222209..2225481680789931.8884158-CDS-P-littoralis_Contig194:222209..222548Pylaiella littoralis U1_48CDSP-littoralis_Contig194 222210..222548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.83.1prot_P-littoralis_Contig194.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 222210..222548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.83.1

>prot_P-littoralis_Contig194.83.1 ID=prot_P-littoralis_Contig194.83.1|Name=mRNA_P-littoralis_Contig194.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
QQGRGAHTSGGAGADRQAPRRRRSGVKSGRGRQGRGRSPSEGGARRSRQK
TRRRHRGTERRSSRRLDPVRRPPAARPRKGRLSAPPTARGRGGGEEARGR
GDKNSGGRAREGR
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mRNA from alignment at P-littoralis_Contig194:222210..222548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.83.1 ID=mRNA_P-littoralis_Contig194.83.1|Name=mRNA_P-littoralis_Contig194.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig194:222210..222548+ (Pylaiella littoralis U1_48)
CAACAAGGCCGCGGTGCGCATACAAGCGGCGGAGCGGGGGCGGATCGCCA
GGCACCACGCCGCCGCCGTTCGGGCGTCAAGAGCGGCCGCGGCCGCCAAG
GCCGAGGCCGAAGCCCGAGCGAAGGCGGAGCTCGAAGAAGCCGCCAGAAG
ACTCGCCGCCGCCACCGAGGAACGGAACGCCGCTCGAGCCGCCGTCTCGA
TCCAGTGCGCCGCCCGCCAGCGGCACGCCCGCGGAAAGGCCGCCTTTCAG
CTCCGCCGACGGCGAGAGGAAGAGGAGGAGGGGAAGAGGCGCGTGGCCGC
GGCGACAAAAATTCAGGCGGGCGAGCGCGGGAGGGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:222210..222548+

>mRNA_P-littoralis_Contig194.83.1 ID=mRNA_P-littoralis_Contig194.83.1|Name=mRNA_P-littoralis_Contig194.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig194:222210..222548+ (Pylaiella littoralis U1_48)
CAACAAGGCCGCGGTGCGCATACAAGCGGCGGAGCGGGGGCGGATCGCCA
GGCACCACGCCGCCGCCGTTCGGGCGTCAAGAGCGGCCGCGGCCGCCAAG
GCCGAGGCCGAAGCCCGAGCGAAGGCGGAGCTCGAAGAAGCCGCCAGAAG
ACTCGCCGCCGCCACCGAGGAACGGAACGCCGCTCGAGCCGCCGTCTCGA
TCCAGTGCGCCGCCCGCCAGCGGCACGCCCGCGGAAAGGCCGCCTTTCAG
CTCCGCCGACGGCGAGAGGAAGAGGAGGAGGGGAAGAGGCGCGTGGCCGC
GGCGACAAAAATTCAGGCGGGCGAGCGCGGGAGGGCCGC
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