mRNA_P-littoralis_Contig194.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.129.1
Unique NamemRNA_P-littoralis_Contig194.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.129.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.510e-18
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:  365 WENYHGVFSHYAGARSRDGKTFKSATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVC 595
            W N H  ++   GA++ DG+ +K+AT+A+GDIVG+ C C +  + V +DI  GCTG+I+ G+ VVKDW+DPPLHL C
Sbjct:  110 WLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKCSNPASDV-EDITHGCTGEIEEGDYVVKDWIDPPLHLHC 185
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BLAST of mRNA_P-littoralis_Contig194.129.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.130e-18
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 2 
Query:  365 WENYHGVFSHYAGARSRDGKTFKSATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVC 595
            W N H V+   AGA + DG  +K+AT+A+G+IVG+ C C+D +  V  DI  GCTG I+ GE VVKDW DPPLHL C
Sbjct:  110 WLNIHAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFDPEKNVD-DIKEGCTGDIQEGEYVVKDWTDPPLHLHC 185
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BLAST of mRNA_P-littoralis_Contig194.129.1 vs. uniprot
Match: D7FZU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU8_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 2 
Query:  371 NYHGVFSHYAGARSRDGKTFKSATVASGDIVGKRCLCWDGKTAVSKDINTGCTGKIKAGELVVKDWVDPPLHLVC 595
            N H V  H   A++  GK  K+AT  +   +GK C+  D +  ++ D+ TGCTG I  G+LV+KDW DPPLH  C
Sbjct:   12 NVHAVEIHCVLAKTSGGKLLKNATPTTKKRIGKSCVRAD-ENNIADDLQTGCTGIISEGDLVIKDW-DPPLHFYC 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE3.510e-1850.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE4.130e-1854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZU8_ECTSI2.300e-1044.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:403412..405427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size598
Hectar predicted targeting categorysignal peptide
Exons4
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.6309898-UTR-P-littoralis_Contig194:403411..4035611680789931.6309898-UTR-P-littoralis_Contig194:403411..403561Pylaiella littoralis U1_48UTRP-littoralis_Contig194 403412..403561 +
1680789931.6445687-UTR-P-littoralis_Contig194:404358..4044881680789931.6445687-UTR-P-littoralis_Contig194:404358..404488Pylaiella littoralis U1_48UTRP-littoralis_Contig194 404359..404488 +
1680789931.6532323-UTR-P-littoralis_Contig194:404566..4045761680789931.6532323-UTR-P-littoralis_Contig194:404566..404576Pylaiella littoralis U1_48UTRP-littoralis_Contig194 404567..404576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789931.6622138-CDS-P-littoralis_Contig194:404576..4047521680789931.6622138-CDS-P-littoralis_Contig194:404576..404752Pylaiella littoralis U1_48CDSP-littoralis_Contig194 404577..404752 +
1680789931.673671-CDS-P-littoralis_Contig194:405297..4054271680789931.673671-CDS-P-littoralis_Contig194:405297..405427Pylaiella littoralis U1_48CDSP-littoralis_Contig194 405298..405427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.129.1prot_P-littoralis_Contig194.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 404577..405427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.129.1

>prot_P-littoralis_Contig194.129.1 ID=prot_P-littoralis_Contig194.129.1|Name=mRNA_P-littoralis_Contig194.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MNLLLVFSCCFSRVCPVRYTYFWQCGRTTTASSRTTQEPGAATAKPSRAQ
PSLAVTSSARGACAGTERPPSPRTSTLGAPARSRPGSSWSRTGWTPPCTS
SA
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mRNA from alignment at P-littoralis_Contig194:403412..405427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.129.1 ID=mRNA_P-littoralis_Contig194.129.1|Name=mRNA_P-littoralis_Contig194.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2016bp|location=Sequence derived from alignment at P-littoralis_Contig194:403412..405427+ (Pylaiella littoralis U1_48)
ACACAGCGTCACACCCATCACACAGAGCACAAAACACTTTATATGCAGAA
TGAGCGCGTTGTCAAAGTGTTCACCACTGAAGCGCAAGCAGCAAGGTAGC
AATACGGCAGCCTAGCCTAGGGCTCTCTTCTCGGCTGGCAACCCAGACTG
GCCCTGTCTGGATTTCGAGGACTGCCCTGACGGGCGCCTGAAGGTCTGTC
TTCGCAAGGAGGATAAAAAAGAGTACGTCACCTGCGACCAAAACGTGTGG
AGCCACAAGGACACGTGCAAGGTATGACTACGGTTGTGTTGGAAACGTGA
TCTGTGATTACCTTTTGCCGTCATTATCGTGATTGTGCTCTTCGATCACC
CTCACGAATTTTGTAGTGTTTGCATCCGTGTCCTGTGTGTGCTGCTGTGT
TTTATTTTGCAGTCTCCCCGAGCACCACCGCCACCAGCACCTTTCCCATG
AATCTGTTGCTCGTTTGTTTCAGTGCTGCAGACCGTATGTTGCCGGTAAC
AATGTGTTCCGTGGATTGCACGTGCTTTACCGCATGTGTGTCAAGACTTA
TATTGTGAGCACACTTTTTTTTTCATGCCTCGCACAATTTTTCAAGGTCG
CGCTGTACCGCCACCAGCACCTTTCCCATGAATCTAATGCTTTTTTTTTA
TGCCTCGCACATTTTTTCAAGGTCACGCTGTACCGCCACCAGCACCTTTC
CCATGAATCTGTTGCTCGTTTGTTGTGCTGCAGATCGTGTGTTGCCGGTA
ACAATGAGGTGTCCGTCGATTGCATGTGCTTTCTGTGACCGTGCCTCTTT
CATGACCCTCACGGATGTTGTGATTTTTGCATCTGTTCCTCCCTCTTTCA
ACATTTTCAGCACTTCCCTTTTTTTTCATGCCTCGCACATTTCAAGGTCA
CGCTGTCCATGCTGCTCGCCAGCAAGGATCACCCGCACGGCTACCAGCTG
TGCCTGTGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGA
GAAGGACGACCGTGGCTACACCGGTGAGAGGTTATTTCGTCCCGTTTTTC
CGTCGAGGTCACGCTGTACTGCCACCAGCACCTTTCCCATGAATCTGTTG
CTTTTTTTTTTCATGCCTCGCACAATTTTTCAAGGTTACGCTATACCGCC
ACCAGCACCTTTCCCATGAATCTGTTGCTTGTTTTTTCATGCTGCTTTTC
TCGTGTTTGTCCCGTTCGGTACACATATTTTTGGCAGTGTGGGAGAACTA
CCACGGCGTCTTCTCGCACTACGCAGGAGCCAGGAGCCGCGACGGCAAAA
CCTTCAAGAGCGCAACCGTCGCTAGCGGTGACATCGTCGGCGTAAGTTGA
ACGGTTGCATGTCATGTCCGCCATGATGACCGTCGTATATGCTGTTTTTT
GTCATGTGATAAAGAGACCTGCCCCCGTCTGTTTTTCCATTTTCTTTTTA
CATGCTGCTTTTACCCATGTAGTTAAAAAGAAAAAAGAGCCGCCCCCGTA
TAATATTTTTATAATAATTACGTATGCCGTTACACTGTACCTCTCTTCTT
CCTCCCGCTTCCGCCTGCCCCTCCCGCTCTCCATTTATTTCCCTCACCGT
CGTTGACGGTGTCATCATCGGCGTTAGGTGTACGGTTGCATGTTATCTCC
GACATCATGACCGTCGTACTGTTTTTTTGTCGCGTGATAAAGAAGACCTG
CCCCCGTCTATTTTTCCGTGTTCTTTTTATATGCCGTTTTTATCCCATGT
CGTTCAAAAGAGCCGCCCCAGTCTATTTCTTTTATCATAATTACGTGCGC
CGTAACTCTGTACCTCTCTCTCCCTCCCCCTTCGCCCTTCCCTCCCGCTC
TCCCTTTATTTCCCTTCCTCAATCCGAAAATAACAGAAGAGGTGCCTGTG
CTGGGACGGAAAGACCGCCGTCTCCAAGGACATCAACACTGGGTGCACCG
GCAAGATCAAGGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGACCCCCCC
CTGCACCTCGTCTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:403412..405427+

>mRNA_P-littoralis_Contig194.129.1 ID=mRNA_P-littoralis_Contig194.129.1|Name=mRNA_P-littoralis_Contig194.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig194:403412..405427+ (Pylaiella littoralis U1_48)
ATGAATCTGTTGCTTGTTTTTTCATGCTGCTTTTCTCGTGTTTGTCCCGT
TCGGTACACATATTTTTGGCAGTGTGGGAGAACTACCACGGCGTCTTCTC
GCACTACGCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAGCGCAA
CCGTCGCTAGCGGTGACATCGTCGGCAAGAGGTGCCTGTGCTGGGACGGA
AAGACCGCCGTCTCCAAGGACATCAACACTGGGTGCACCGGCAAGATCAA
GGCCGGGGAGCTCGTGGTCAAGGACTGGGTGGACCCCCCCCTGCACCTCG
TCTGCT
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