mRNA_P-littoralis_Contig193.27.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig193.27.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI) HSP 1 Score: 489 bits (1259), Expect = 1.420e-155 Identity = 271/403 (67.25%), Postives = 306/403 (75.93%), Query Frame = 1
Query: 316 PGDETTSLASRGLLTSSGGGTFSGSYERLPSWGGDG--------------DGGDEETGGGGDISGDKIVRRSISVNSDGGEYGGGSGARSLSISSDIIPATSDGEDLPVGP-VKKRGPKSGRKSR-LALGAGRGGGRQGWGLSMKDRQVLKRRTVLARLTPIVLLSSFVNDLDLVTDWTFLKYGLAGAGEVITQLALLFAVVGTVMWALSATEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVILEDAPQFVITVITKPTSVTGVLNLCSSGLSLCAKVVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKQAASAEKLVELAWINRCCVGEKKAAAVYQVLQIDPTLVNGELEYMRADLLSGSKLYITHCCLTGPIPSKLGDLKILQIVVLSAN 1476
PGD++ +LA GL S GGGTFSGSY+RLPSWGGD DGGD V RS+S+NSDGG +G G+ A + +GP +K+R P G+ SR L GRG G W LS KDRQVLKRRT+L+R+TPIVLLSSFV DLDL+TDWTFLKYGLAG G +I +LAL FA+VGTVMWALS TEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANV LED PQF+ITVIT+PTSVTGVLNLC+SGLSLCAK+VHG SSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKK+A +AEKLV LAW NRC GE+KAAAV+QVLQ+DPT V G+LEYMRADL SGS+LYIT LTGPIPS++GD+ IL+ VVLS N
Sbjct: 26 PGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXXXDGGD--------------VPRSLSINSDGGGFGAGTXXXXX-----XXXAAATARSTELGPAIKRRAP--GKTSRGLGASGGRGSGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILRAVVLSGN 407
BLAST of mRNA_P-littoralis_Contig193.27.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 4.000e-125 Identity = 248/407 (60.93%), Postives = 282/407 (69.29%), Query Frame = 1
Query: 88 MMYIVFLAFLYKLQGGSFISFVRAALGYDVEADKTPATPAKSGNDAFQKGQRRPVQQSIAATTGYASDGAASNSSAPG--------DETTSLASRGLLTSSGGGTFSGSYERLPSWGGDG------------DGGDEETGGGGDISGDKIVRRSISVNSDGGEYGGGSGARSLSISSDIIPATSDGEDLPVGP-VKKRGPKSGRKSR-LALGAGRGGGRQGWGLSMKDRQVLKRRTVLARLTPIVLLSSFVNDLDLVTDWTFLKYGLAGAGE-----------VITQLALLFAVVGTVMWALSATEFSLMSKLKNMWKGNPLSRLQHVGLGWQLLANVILEDAPQFVITVITKPTSVTGVLNLCSSGLSLCAKVVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 1209
MMY+VFLAFLYKLQGG F SFVRA LG+DVEAD TP S N + +KG +PV+ ++A GY SDGAAS+ SAPG D++ +LA GL S GGGTFSGSY+RLPSWGGD DGGD V RS+S+NSDGG + G+ AT+ +L GP +K+R P G+ SR L RG G W LS KDRQVLKRRT+L+R+TPIVLLSSFV DLDL+TDW FLKYGLAG GE +I +LAL FA+VGTVMWALS TEFSLMSKLKNMWK LQHVGLGWQLLANV LED PQF+ITVIT+PTSVTGVLNLC+SGLSLCAK++HGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR
Sbjct: 1 MMYLVFLAFLYKLQGGRFRSFVRAVLGHDVEADMTPT----SHNASDEKGVSKPVKPAVA---GYISDGAASDVSAPGEPAAAALGDKSRALAGLGLSASKGGGTFSGSYQRLPSWGGDXXXXXXXXXXXXXDGGD--------------VPRSLSINSDGGGFEAGTRXXXXXX---XXXATARSTEL--GPAIKRRAP--GKTSRGLGASGARGSGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMWKV-----LQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374
BLAST of mRNA_P-littoralis_Contig193.27.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI) HSP 1 Score: 183 bits (464), Expect = 2.290e-45 Identity = 108/258 (41.86%), Postives = 158/258 (61.24%), Query Frame = 1
Query: 706 RQVLKRRTVLARLTPIVLLSSFVNDLDLVTDWTFLKYGLAGAGEVITQLALLFAVVGTVMWALSATEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVILEDAPQFVITVITKPTSVTGVLNLCSSGLSLCAKVVHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKQAASAEKLVELAWINRCCV----------GEKKAAAVYQVLQIDPTLVNGELEYMRADLLSGSKLYITHCCLTGPIPSKLGDL 1443
R+ LKR + ++TP+ +L+S V+DLDL DW FL+ GL A E++ +A + VVGTVM+ L EF +S+ W +G LS LQHV LGWQLL NV++ED PQ VIT +T PTSV GVLN+ ++G +L AK+ G +++ +S+Q +MID DP V ++L R +A++ AA+A L L +NR ++ A +QV+Q+DP +NGEL Y+R + L S+L + L G +P LGD+
Sbjct: 122 RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVL--VNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIR-EKLEVSRLNLGRFGLKGSLPPSLGDV 375
BLAST of mRNA_P-littoralis_Contig193.27.1 vs. uniprot
Match: A0A6H5JP38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP38_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 3.800e-14 Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1246 LVELAWINRCCVGEKKAAAVYQVLQIDPTLVNGELEYMRADLLSGSKLYITHCCLT 1413
+V L RC GE+KAAAV+QVLQ+DPT V G+LEYMRADL SGS+LYIT C LT
Sbjct: 1 MVPLHDTGRCSTGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITSCSLT 56 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig193.27.1 >prot_P-littoralis_Contig193.27.1 ID=prot_P-littoralis_Contig193.27.1|Name=mRNA_P-littoralis_Contig193.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=658bp MMYIVFLAFLYKLQGGSFISFVRAALGYDVEADKTPATPAKSGNDAFQKGback to top mRNA from alignment at P-littoralis_Contig193:63393..89881+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig193.27.1 ID=mRNA_P-littoralis_Contig193.27.1|Name=mRNA_P-littoralis_Contig193.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=26489bp|location=Sequence derived from alignment at P-littoralis_Contig193:63393..89881+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig193:63393..89881+ >mRNA_P-littoralis_Contig193.27.1 ID=mRNA_P-littoralis_Contig193.27.1|Name=mRNA_P-littoralis_Contig193.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1974bp|location=Sequence derived from alignment at P-littoralis_Contig193:63393..89881+ (Pylaiella littoralis U1_48)back to top |