prot_P-littoralis_Contig191.109.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig191.109.3
Unique Nameprot_P-littoralis_Contig191.109.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length304
Homology
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BLAST of mRNA_P-littoralis_Contig191.109.3 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 5.780e-126
Identity = 238/306 (77.78%), Postives = 263/306 (85.95%), Query Frame = 0 
Query:    6 LSEFAST--VPMKSSKGDNLEHPVTELEAIRSILVQGLPLLDQELTESSIVQVFSAYGEITKLLLQTNEESKSQRAVLVFGEAAGATAALQANGRDILGANCTVSLASSMPTLNDGLERDNISDQPPTSGGMEGRTLTTAEWIKDIFAQGMVYTRLFDEKLGVSQTARSIAAKVQNQVEQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETARGWALNAKQSTDKALESNPRVAAGVHQAGDAFGNLVRNVSGLAQQAMGQPPQAD------PSAAAPPDPTDGSFHVPGSADSAGAPPTKPV 303
            ++EFA+    PMK SKG +LEHPVT+LEA+RSILVQGLPLLDQELTESSIVQVFSAYGEI+KLLLQTNEES++QRAVLVF + AGAT+ALQANGRDILGANC+VSLASSMP LNDGL+RDN+SDQP   GGMEGRTLTTAEWIK IFAQGMVYTRLFDEKLGVS TA+SIAAKVQ QV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETA  WA +AK+STDKALESNPRVAAGVHQAGDA G+LV++VSGLA QAMGQP +        P +A P +   G+F +  S  SAGAPPTKPV
Sbjct:    1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVPANTAGGTFGISESDTSAGAPPTKPV 306
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BLAST of mRNA_P-littoralis_Contig191.109.3 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.350e-30
Identity = 68/124 (54.84%), Postives = 93/124 (75.00%), Query Frame = 0 
Query:   27 VTELEAIRSILVQGLPLLDQELTESSIVQVFSAYGEITKLLLQTNEESKSQRAVLVFGEAAGATAALQANGRDILGANCTVSLASSMPTLNDGLERDNISDQPPTSGGMEGRTLTTAEWIKDIF 150
            VTE +A RS+LVQGLP+LD++ TE S+V+VFS YG +++LLLQT   S++QRA++VF E+AGATAALQ N RDILGA+C+V L+S++   N+  +R N+       G + G T TTAEWI+ IF
Sbjct:  154 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNVHWMGEAEGALSGGTPTTAEWIQLIF 277
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BLAST of mRNA_P-littoralis_Contig191.109.3 vs. uniprot
Match: A0A7S3Y4B4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4B4_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 3.700e-5
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 0 
Query:   23 LEHPVTELEAIRSILVQGLPLLDQELTESSIVQVFSAYGEITKLLLQTNEESKSQRAVLVFGEAAGATAA-LQANGRDI--LGANCTVSLASSMP 114
            L+   +E EA R++LV G+P +    +E +I+  F+ YG I++L+ QT E  ++QRAV+++ E  G +AA + A  +D+  LG  C       +P
Sbjct:   16 LDDWASEAEASRAVLVSGIPNVKGSGSEDAIMTRFAQYGTISRLIFQTEESGETQRAVVIYAEDQGPSAAQMGAELQDLVLLGQRCPCQFVRDLP 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.109.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI5.780e-12677.78RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE3.350e-3054.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y4B4_HETAK3.700e-534.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 35..108
e-value: 0.0024
score: 27.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 44..103
e-value: 1.7E-5
score: 24.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 34..112
score: 10.87185
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 16..122
e-value: 7.0E-8
score: 34.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..303
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 32..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:383592..390217 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.109.3mRNA_P-littoralis_Contig191.109.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig191 381739..390417 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig191.109.3 ID=prot_P-littoralis_Contig191.109.3|Name=mRNA_P-littoralis_Contig191.109.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=304bp
MTRQTLSEFASTVPMKSSKGDNLEHPVTELEAIRSILVQGLPLLDQELTE
SSIVQVFSAYGEITKLLLQTNEESKSQRAVLVFGEAAGATAALQANGRDI
LGANCTVSLASSMPTLNDGLERDNISDQPPTSGGMEGRTLTTAEWIKDIF
AQGMVYTRLFDEKLGVSQTARSIAAKVQNQVEQIDEKHNVSGKFAAAAMT
AQAKVQEVDTKLKVSETARGWALNAKQSTDKALESNPRVAAGVHQAGDAF
GNLVRNVSGLAQQAMGQPPQADPSAAAPPDPTDGSFHVPGSADSAGAPPT
KPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf