mRNA_P-littoralis_Contig191.26.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.26.2
Unique NamemRNA_P-littoralis_Contig191.26.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.26.2 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 9.280e-15
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  931 GFCGFWHSVVRQAQRNIEGDDGLSAGDRWGDACVRGLTAGEAGVSGVLGLVGGRDVLWSKNCAAVASGNARAAGGAGPRCCRGRWF 1188
            G  G + SVVR A+R + GDDGL+  +RW  A VRG+T G A VSGVLGLV G DVLWSK+C  +AS N  A G   PRC R + F
Sbjct:   48 GSAGVFPSVVRAAERTLGGDDGLAPPERWEHARVRGVTTGRACVSGVLGLVEGSDVLWSKDCCGMASVNRGAGGSMVPRCSRCQKF 133
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BLAST of mRNA_P-littoralis_Contig191.26.2 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-7
Identity = 48/155 (30.97%), Postives = 73/155 (47.10%), Query Frame = 2 
Query:  704 KVTVEKPDLGGRGSVKSITLNGIDVMNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQHVVDAEDMQGGSADFGTVWCARLSAISRAMTGYRRAIAGVTLASGV*RRGRPVFLGSSAWSGGEMCCGRRTVLLWRVETLALLGERGRG 1168
            +V VEKPD+ GRGS++ I++NG+DV +    +A+ST    I   +DL  +L  V  V PC G +RQH+     +  GSA+    W + +    RA+ G    + G    +   R    V  GS   SG     G    +LW  +   +  +   G
Sbjct:    3 QVVVEKPDIQGRGSIRYISMNGLDVTS---HDAISTVGRFIYSLEDLKQVLRIVDSVLPCLGYARQHMEYERRLPTGSAE---AWGSVVRGAERALLGDHVPVMGERWRNAPVRG---VLKGSGGVSGVLGTVGHTVDVLWSKDCTGVASDYASG 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.26.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE9.280e-1555.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.330e-730.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:130475..134940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1248
Hectar predicted targeting categoryother localisation
Exons7
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.26.2prot_P-littoralis_Contig191.26.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 132854..134577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.352111-UTR-P-littoralis_Contig191:130474..1306151680789918.352111-UTR-P-littoralis_Contig191:130474..130615Pylaiella littoralis U1_48UTRP-littoralis_Contig191 130475..130615 +
1680789918.3630748-UTR-P-littoralis_Contig191:132843..1328531680789918.3630748-UTR-P-littoralis_Contig191:132843..132853Pylaiella littoralis U1_48UTRP-littoralis_Contig191 132844..132853 +
1680789918.4414093-UTR-P-littoralis_Contig191:134577..1347011680789918.4414093-UTR-P-littoralis_Contig191:134577..134701Pylaiella littoralis U1_48UTRP-littoralis_Contig191 134578..134701 +
1680789918.4527962-UTR-P-littoralis_Contig191:134858..1349401680789918.4527962-UTR-P-littoralis_Contig191:134858..134940Pylaiella littoralis U1_48UTRP-littoralis_Contig191 134859..134940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.3769786-CDS-P-littoralis_Contig191:132853..1329641680789918.3769786-CDS-P-littoralis_Contig191:132853..132964Pylaiella littoralis U1_48CDSP-littoralis_Contig191 132854..132964 +
1680789918.3909104-CDS-P-littoralis_Contig191:133156..1334111680789918.3909104-CDS-P-littoralis_Contig191:133156..133411Pylaiella littoralis U1_48CDSP-littoralis_Contig191 133157..133411 +
1680789918.4006197-CDS-P-littoralis_Contig191:133648..1338371680789918.4006197-CDS-P-littoralis_Contig191:133648..133837Pylaiella littoralis U1_48CDSP-littoralis_Contig191 133649..133837 +
1680789918.4116216-CDS-P-littoralis_Contig191:134024..1341681680789918.4116216-CDS-P-littoralis_Contig191:134024..134168Pylaiella littoralis U1_48CDSP-littoralis_Contig191 134025..134168 +
1680789918.4296124-CDS-P-littoralis_Contig191:134385..1345771680789918.4296124-CDS-P-littoralis_Contig191:134385..134577Pylaiella littoralis U1_48CDSP-littoralis_Contig191 134386..134577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.26.2

>prot_P-littoralis_Contig191.26.2 ID=prot_P-littoralis_Contig191.26.2|Name=mRNA_P-littoralis_Contig191.26.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=297bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSGKVKTGTSAQALVWVREWLATSEY
AGIVGFDATPYSIGHMFVRLLKHKNYFCLDVAGMQKKAKVYSIQSCEWGD
TYIDLLKSLPLQWSATRLPDTSMVFSRDDQGAIVKVTVEKPDLGGRGSVK
SITLNGIDVMNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQ
HVVDAEDMQGGSADFGTVWCARLSAISRAMTGYRRAIAGVTLASGV*
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mRNA from alignment at P-littoralis_Contig191:130475..134940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.26.2 ID=mRNA_P-littoralis_Contig191.26.2|Name=mRNA_P-littoralis_Contig191.26.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4466bp|location=Sequence derived from alignment at P-littoralis_Contig191:130475..134940+ (Pylaiella littoralis U1_48)
CCCGCTGCTGCCCACTTCCATCACGCTCGCACGCGACCAAGCACGCGACG
ACCGCGACGCCAACTTCTGATCTACCTGCTGTACGCGCTACCATCAGTAC
GAGTGAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTT
GTTGTCATGACCGTCCTCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAA
TTCAGACTACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACGAAGGAG
GTTAGTCTCATACACCCGGTGCCGTCAGTATATGTCTCAGGCTCTCTCGG
ATAGAAGTCCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAA
ATGCGGACAAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAAA
AGCAGGTTGAAAAACAATGCAGGAAAAATGGAAAATTTATTTTTGAAAAA
TCAACACACAGCCCATGGCGTGCAATCACCACCGCGCGGTACGCCAGAGC
ACGCCTCGTGCCTGCGGGTGAACAGAAAATGCTGTGGGTTACCAGAATGC
CGTCGGCTTCAGCTTTGGTGCTGTGTTGTGTATCGGTGACGAGTCACTTT
ATAGCAGGGCATTGTTGGCTAGGTAATCTGTAATCTGTAATCTGCCACCG
CTTCTGCGCCAGAGACAAGACACCATACAGACTTGAACAGACAGATCCTT
TGAGATTATTTCTTCCCACACAAAGCCGTTATCGTCCGTTCACACGCGGG
TGTGCTTGCCCACCACAGGTTTATAGCGTACGTTCGGGACCGCACGCTTC
CCAGTGCTGCGCACCGGTTTAAGAAAGCGCACCTTCCGAACACCGTTCTG
GCTGCTGTGAGGGCCGAAGAAGACACAACATACCAATCTAAAACACCTCA
GCTGTAGTGTGCTGTAATGGCTGTCGAATGAGCCCTGGTTTGTCGAGTTA
GGCGGCCTGTGGCCCTCAAATGTGACGAAAGAAAAAATCGAAGTCCGGCG
GCAAATAGGCTGCAGTTTTGTGCGGAGCAACCTCTCGCGGGTGCAGAGGC
TACATTTCACCCGAGTACGAGAACGCATAGCACACAGCACAGATCCGTAC
GAAAGTTGGCACATGGGCTCAACATACAACTAGGGGGTAGTTTGCAAGAA
GACGCGCACCAATACGCGCTGTGGCGCACGAACGCGGCGCTTGCTTGTTA
AAAATAACGTCCGCGCGAAGGCACCATGCTTAGCTTCCTGCAAACGATTC
AGGGAGAGTGCACCGGTTTGAACAAGAGGACATTCTGAGGGTTGCTACGC
ACTTCGAATTTTGCGGGAACACCCAGTATAGGCTGAGAACGCGCAATCGG
CGCGCACCAGGTTTGAACTTAAATTTTACGTTCCGCCGACGCACACCGGC
TCTCTTCATCTTACGCGCCAAAAAGAAAAACAGATGTACTTCGTGTGTCG
CTAGACTGATTAGGTTTTTCCGCGGGCGCGCGAATCCACGGCCCGCCGCG
AATCTGCTGGGCCCCTCCTACTTTTTCGCCGGTGCGCAGCACTGTTCCTC
GCAAGCCGTTTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCGGGCAA
TTTCGAATGGGTGTAGACTAGTCTTACACGTGACAAATTCTTCGTCCTGC
CTGAACTCTTCCTCACTGCCGCAAACATCGATTGACTTCTGCGCACACAC
TCTATCATTCGAAGATAACAATATGCGGACCATGACCGTTGCTCCCATTC
CCTGTCCTCCACAGCAGTACTTCCTTAAAGAGGCAGCGTCCCACAAGAGG
AAATGACGTAGAATACCACCCCTCTTGCGCAAATATGAATCTGCCGTGCT
CGATGTTTCGCGCGCTAGTGGTTTCATACTTTCCACCACTATTAATAGCT
GTTAATTTGCTTGCATTATTTGCACCCTTGTTCTGGCGAGTGTTAAAGGC
TGTATTTCAGCTGTTGTTTTTGTCACATTGAAAACCGTTCCGTTCTCTCT
ATCCAGTACCTCCAGCTGTCCGTGCTCTTCCAACACTTGCGTCGGGCGAT
TCCCGTGGTCACAAGCTAACTACCCTAAGAAAAGGTATTCTAAAATAAAA
CACAATAAAAACGGACCACGGAGCCGAAAGATCAGCAAAGCAGTAGAAAG
AAGCAGCAGAAGCATATTTAAAATATAACTCAACGCATGCCGTGCTCAAG
AGGCGGGGAATGGACGGGGAGTTTGTGCATCTTAGGCCATAGGTATCTCA
ATGGCAATCAGGTATAACCTCTTGTCGCGTGAACACATGTGCATGCCTAT
TCATAAAAGCCGATGAATTCCGAATAGTTCCCATTTTTATATCGTTCACA
CCGCAACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAG
GATGAGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGA
TCGTGCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTAC
TTCACCATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAA
GTAATGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGT
GTCCCGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACC
CTCGTACCTCTGTGTCGTCGTTTTTGATATAGGTGTGGACGCCCGCGTCC
ATCGCCACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGCCT
GACGAGCATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTCAG
GCAAGGTCAAGACAGGAACCTCCGCCCAAGCGTTGGTATGGGTGCGTGAA
TGGCTAGCCACCTCCGAGTATGCCGGAATAGTGGGATTCGACGCGACGCC
CTACTCAATTGGACACATGTTCGTCCGCCTTCTGAAGGTACGGGATAATT
GTGTCGTAGACGGTTGGCCCGAGTGGGGCTACGTGCATCTCATTTTTTAT
TTGGAAAGACAGCTGTGATCACAAGTGTATCGCACCCTAAACCGAAGCTT
CGCGACTGTTGGATCGATCTTTGAGTACGAGAGCTTTCCATTTGATGTCT
TATATTTCTACCTGCGCACCCCTCCGCCCGTTCCCCTGTGTTCTCCTCGG
CTACCGTTGTACTTCACCCGAAAGCACAAGAACTACTTCTGTCTGGACGT
GGCTGGTATGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGT
GGGGCGATACGTACATCGACCTCTTGAAGTCGTTGCCCTTGCAATGGTCC
GCGACGAGGCTACCGGATACGTCGATGGTCTTCTCAAGAGATGACCAAGG
AGCAATCGTGAAGGTCAGGGTCGCCTCAATCTTGCGTGTCAGTTGGCGAC
GATTGTGTTTGTCCCCGTCGGCGCCTAATATTGAGTGCCGAAGTATGTAG
AGGATAATATACTGTATGCTTGAATCGATTTTCGGGCAGGGGCCCGTATT
GACTATTGTTTTGCGCTTTCCGGTGTTTCCGATGCTGCGGTATGGTCCAG
GTCACCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAATCCAT
AACGTTGAACGGCATCGATGTGATGAACTGGATGAAAGACAATGCCCTGT
CAACGGCTGAGGGACACATCTGCAAAAAGCAAGACCTGGCACTGGTGAGG
AAAATATTAGCAGTTTTGTTGGCAACACAGGGTGCTCGAGTGTCGTCCAT
GCCGCGCTTTTTCCTGGGTAGGCTCTTCGTGGTATGCGCATACATAGCTC
CCGACGTCTTGAGGGGTCTGGGTCCAATATTGTGGCTGGACGTGATCTGC
GACTGAGATATACGCCGCCCAACATGTTGCGTTTGGCGTTTGGTCTGTTT
TTTTCTCGCAGATGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGT
ATCTCCAGGCAGCACGTTGTGGACGCTGAAGACATGCAGGGGGGTTCTGC
GGATTTTGGCACAGTGTGGTGCGCCAGGCTCAGCGCAATATCGAGGGCGA
TGACGGGTTATCGGCGGGCGATCGCTGGGGTGACGCTTGCGTCAGGGGTT
TGACGGCGGGGGAGGCCGGTGTTTCTGGGGTCCTCGGCTTGGTCGGGGGG
CGAGATGTGTTGTGGTCGAAGAACTGTGCTGCTGTGGCGAGTGGAAACGC
TCGCGCTGCTGGGGGAGCGGGGCCGAGGTGTGCGAAGTGCAAGGAGTTCT
GGCGTGTGACTGTCAACCCAAAGATCAAAAACTTCCTCTCTCCTGGGTTG
TAGACGATGCCGAGAGAGGCGCATGCAGTCTCGATCCATCTCTCACCCGA
GACCGTTCCATCATGTTGTCCGTTATTGTCCTAGGTGCTGTCGGGGACGA
TGGTTCGTATCATCGACAAGATTCAGTTCGACCGCGTGACCATGGGAGAA
TCACCCGACCTGGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:130475..134940+

>mRNA_P-littoralis_Contig191.26.2 ID=mRNA_P-littoralis_Contig191.26.2|Name=mRNA_P-littoralis_Contig191.26.2|organism=Pylaiella littoralis U1_48|type=CDS|length=891bp|location=Sequence derived from alignment at P-littoralis_Contig191:130475..134940+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAACCT
CCGCCCAAGCGTTGGTATGGGTGCGTGAATGGCTAGCCACCTCCGAGTAT
GCCGGAATAGTGGGATTCGACGCGACGCCCTACTCAATTGGACACATGTT
CGTCCGCCTTCTGAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGGTA
TGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGGCGAT
ACGTACATCGACCTCTTGAAGTCGTTGCCCTTGCAATGGTCCGCGACGAG
GCTACCGGATACGTCGATGGTCTTCTCAAGAGATGACCAAGGAGCAATCG
TGAAGGTCACCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAA
TCCATAACGTTGAACGGCATCGATGTGATGAACTGGATGAAAGACAATGC
CCTGTCAACGGCTGAGGGACACATCTGCAAAAAGCAAGACCTGGCACTGA
TGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCTCCAGGCAG
CACGTTGTGGACGCTGAAGACATGCAGGGGGGTTCTGCGGATTTTGGCAC
AGTGTGGTGCGCCAGGCTCAGCGCAATATCGAGGGCGATGACGGGTTATC
GGCGGGCGATCGCTGGGGTGACGCTTGCGTCAGGGGTTTGA
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