mRNA_P-littoralis_Contig191.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.31.1
Unique NamemRNA_P-littoralis_Contig191.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.31.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.480e-13
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:   92 TMPREAHAVSIHLSPETVPSC-------CPLLS*---VLSGTMVRIIDKIQFDRVTMGESPDLELECYAALASRVDAFIDIFNGK 316
            T+ +E    SI    + VPSC       C  +S    VLSGT+V +I+K+Q D +TMG+  DLEL+CYAALA+++DAFIDIFNGK
Sbjct:  444 TLSQEEKVASITTFRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFNGK 528
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.480e-1350.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:134687..135008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789916.769614-CDS-P-littoralis_Contig191:134686..1350071680789916.769614-CDS-P-littoralis_Contig191:134686..135007Pylaiella littoralis U1_48CDSP-littoralis_Contig191 134687..135007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.31.1prot_P-littoralis_Contig191.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 134687..135007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.31.1

>prot_P-littoralis_Contig191.31.1 ID=prot_P-littoralis_Contig191.31.1|Name=mRNA_P-littoralis_Contig191.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
GSGAEVCEVQGVLACDCQPKDQKLPLSWVVDDAERGACSLDPSLTRDRSI
MLSVIVLGAVGDDGSYHRQDSVRPRDHGRITRPGVGVLRSTSVEGGCLHR
HLQRQVN
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mRNA from alignment at P-littoralis_Contig191:134687..135008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.31.1 ID=mRNA_P-littoralis_Contig191.31.1|Name=mRNA_P-littoralis_Contig191.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=322bp|location=Sequence derived from alignment at P-littoralis_Contig191:134687..135008+ (Pylaiella littoralis U1_48)
GGGAGCGGGGCCGAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGACTG
TCAACCCAAAGATCAAAAACTTCCTCTCTCCTGGGTTGTAGACGATGCCG
AGAGAGGCGCATGCAGTCTCGATCCATCTCTCACCCGAGACCGTTCCATC
ATGTTGTCCGTTATTGTCCTAGGTGCTGTCGGGGACGATGGTTCGTATCA
TCGACAAGATTCAGTTCGACCGCGTGACCATGGGAGAATCACCCGACCTG
GAGTTGGAGTGCTACGCAGCACTAGCGTCGAGGGTGGATGCCTTCATCGA
CATCTTCAACGGCAAGTGAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:134687..135008+

>mRNA_P-littoralis_Contig191.31.1 ID=mRNA_P-littoralis_Contig191.31.1|Name=mRNA_P-littoralis_Contig191.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig191:134687..135008+ (Pylaiella littoralis U1_48)
GGGAGCGGGGCCGAGGTGTGCGAAGTGCAAGGAGTTCTGGCGTGTGACTG
TCAACCCAAAGATCAAAAACTTCCTCTCTCCTGGGTTGTAGACGATGCCG
AGAGAGGCGCATGCAGTCTCGATCCATCTCTCACCCGAGACCGTTCCATC
ATGTTGTCCGTTATTGTCCTAGGTGCTGTCGGGGACGATGGTTCGTATCA
TCGACAAGATTCAGTTCGACCGCGTGACCATGGGAGAATCACCCGACCTG
GAGTTGGAGTGCTACGCAGCACTAGCGTCGAGGGTGGATGCCTTCATCGA
CATCTTCAACGGCAAGTGAAC
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