mRNA_P-littoralis_Contig19.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.121.1
Unique NamemRNA_P-littoralis_Contig19.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:526934..527694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.4240456-CDS-P-littoralis_Contig19:526933..5272051680789905.4240456-CDS-P-littoralis_Contig19:526933..527205Pylaiella littoralis U1_48CDSP-littoralis_Contig19 526934..527205 -
1680789905.4339345-CDS-P-littoralis_Contig19:527612..5276941680789905.4339345-CDS-P-littoralis_Contig19:527612..527694Pylaiella littoralis U1_48CDSP-littoralis_Contig19 527613..527694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.121.1prot_P-littoralis_Contig19.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 526934..527694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.121.1

>prot_P-littoralis_Contig19.121.1 ID=prot_P-littoralis_Contig19.121.1|Name=mRNA_P-littoralis_Contig19.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
REIQRQRRRYGGIFRGVYGRKTCPHDRVLAAPGALHQTALRTWGRRSPDS
SSHLPSHGRSKRWVYRWSGDLASSRNCRRVHGRVPPWECRTGKCESEDPE
CVSVRVYCHPAQSRASYS
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mRNA from alignment at P-littoralis_Contig19:526934..527694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.121.1 ID=mRNA_P-littoralis_Contig19.121.1|Name=mRNA_P-littoralis_Contig19.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=761bp|location=Sequence derived from alignment at P-littoralis_Contig19:526934..527694- (Pylaiella littoralis U1_48)
CGAGAAATTCAACGACAGCGGCGACGTTACGGCGGTATTTTTCGTGGTGT
TTATGGGCGAAAAACTTGTCCTCACGATCGAGGCAAGTGTCTTCGCCATG
GTGCATATTGTCTACTTCGAAGTATAAATGTATATGCGAGCAGCAAGTGA
AAAGGCAGAGGACCATGGGGCAGCCTTGCTCGTATAGAAGCCGACGGCCA
TCAAACTGCGCGGTGGAAGAAGCTGGGCTACAGCAGTACACGGTTTTATG
TAATAGTTGGTGAGGTTGACTCGAACTCCACACAAAAGATGAACGTTTAA
AACTTATGGTGTCGTCGGCACAGCAAGCTCGGAGACCGTCAGTACCATGC
ATCACGCTTGTTGTAGACCATGCTTCCTGAGCGCCTTTTCGTAGCATATG
CTTGCCCAGTACAAGCTTGCACACACAAAACGTCTTCCTCTCGCTCGAAC
CGATCCGTGCCAACAATACAATTCTACCCTCATGTGCAGTTTTGGCTGCT
CCTGGTGCTCTTCATCAAACCGCTCTACGCACGTGGGGAAGACGGTCGCC
TGATAGTTCGTCCCACCTACCGTCGCACGGTCGCTCGAAACGTTGGGTGT
ACCGTTGGAGTGGTGACCTTGCAAGTAGCCGAAACTGTCGTCGTGTACAC
GGTCGTGTACCACCGTGGGAATGCAGAACAGGTAAATGTGAGAGTGAAGA
CCCTGAATGTGTGAGCGTTCGTGTCTACTGCCATCCAGCTCAATCTCGTG
CTTCATATTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:526934..527694-

>mRNA_P-littoralis_Contig19.121.1 ID=mRNA_P-littoralis_Contig19.121.1|Name=mRNA_P-littoralis_Contig19.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig19:526934..527694- (Pylaiella littoralis U1_48)
CGAGAAATTCAACGACAGCGGCGACGTTACGGCGGTATTTTTCGTGGTGT
TTATGGGCGAAAAACTTGTCCTCACGATCGAGTTTTGGCTGCTCCTGGTG
CTCTTCATCAAACCGCTCTACGCACGTGGGGAAGACGGTCGCCTGATAGT
TCGTCCCACCTACCGTCGCACGGTCGCTCGAAACGTTGGGTGTACCGTTG
GAGTGGTGACCTTGCAAGTAGCCGAAACTGTCGTCGTGTACACGGTCGTG
TACCACCGTGGGAATGCAGAACAGGTAAATGTGAGAGTGAAGACCCTGAA
TGTGTGAGCGTTCGTGTCTACTGCCATCCAGCTCAATCTCGTGCTTCATA
TTCT
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