mRNA_P-littoralis_Contig19.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.98.1
Unique NamemRNA_P-littoralis_Contig19.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:448407..452408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size856
Hectar predicted targeting categoryother localisation
Exons2
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.3199613-UTR-P-littoralis_Contig19:448406..4486901680789905.3199613-UTR-P-littoralis_Contig19:448406..448690Pylaiella littoralis U1_48UTRP-littoralis_Contig19 448407..448690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.3295617-CDS-P-littoralis_Contig19:448690..4489851680789905.3295617-CDS-P-littoralis_Contig19:448690..448985Pylaiella littoralis U1_48CDSP-littoralis_Contig19 448691..448985 +
1680789905.339097-CDS-P-littoralis_Contig19:452133..4524081680789905.339097-CDS-P-littoralis_Contig19:452133..452408Pylaiella littoralis U1_48CDSP-littoralis_Contig19 452134..452408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.98.1prot_P-littoralis_Contig19.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 448691..452408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.98.1

>prot_P-littoralis_Contig19.98.1 ID=prot_P-littoralis_Contig19.98.1|Name=mRNA_P-littoralis_Contig19.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp
MIAISHQLLKDKGGNPRREMSRNGRRDGHRDGDHVSDPVLHLRAETASSP
FPRAAPPDGGSSVSSSRQARGRGHHNGSSNRGVDQEEALGSDRKRGTHGG
GRLVRWAAALAGGKQSSEPSRPRATTPTASGKQQQKQQKQQQQQQQQRSS
NEDAPAPSANEQDNGSGGGGGTSSNGSETGGGEPATPAAA
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mRNA from alignment at P-littoralis_Contig19:448407..452408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.98.1 ID=mRNA_P-littoralis_Contig19.98.1|Name=mRNA_P-littoralis_Contig19.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4002bp|location=Sequence derived from alignment at P-littoralis_Contig19:448407..452408+ (Pylaiella littoralis U1_48)
CCGGGAACTACAGCATAGAGGGGAGGGGGCGGAGAGACATCTACATGACC
CGACTGAGGGTCTTTGATCAATTCCGAGCCGCAGAGAAACGATACCGATC
AGCTGTCTCCTCCGTGCAGCTAGATAGCTGAAGAGCAGCCGCTGCCGCTG
CCGACACAAACACTGCTTGCCGGTTCATGTGTACGCCCCAACTCTTTTTT
CAAGACACAACGAAGTGCGGCCCGGCCGGCTGCCGGTTGCAGTGCTCGGG
CGTCGAGCACTCATCTCCCTCTATTTTCCCGTGAATGATCGCAATCTCGC
ACCAGCTTCTCAAGGACAAGGGGGGGAATCCCCGAAGGGAGATGAGTCGT
AACGGCCGGCGGGATGGTCATCGCGACGGTGATCATGTTTCAGATCCAGT
GCTCCACCTAAGAGCAGAGACGGCAAGCTCGCCCTTTCCTCGAGCCGCTC
CCCCCGACGGCGGCAGCAGCGTGAGTAGCAGCAGGCAAGCCAGGGGAAGG
GGTCACCACAATGGCAGCAGCAACAGGGGGGTTGATCAAGAGGAGGCGCT
GGGGTCGGATCGGAAGCGTGGCACTCATGGTGAGTGAGTGCGTACTTGTG
CAGATAGATGGTGCATTTGGCCTACAAATATGTACTTCGAATGTCACATG
TACTTACTCATTGCGGATTCCATCGTCTCGCTCTCTGCCAAACTGGCTTT
TTTGTTCCTCCATGAAGATCTATCGTGCTGCTTGCTGTACATATTAGAGA
TCAGCGAACCGTCCGCGGTTGTGATATCTAAATGGTTCATTGCATTATCT
TATCTATAATATCACCAGCTGATTATCACTGCACCACAGCACTATTTATC
GGGGCGTGTCGAAATGTTCAGCAAGGTATGTTAAGTCTGGTTATTACGGT
CAAAGAATGTTGACCGAAGGATCTTTCACCATCAAAAGATTCTTTGAAAA
CCCATCTTACGGGGAAGAATGTTTGCGAAGATTAACGTGTTTGCAATAAG
GAAATATGTTTCGGGGTAGCTGCAGACCAAATAAGAACAGTTGTAGGGCG
ATTTGGGCCAAAAATCGGGGTATTTAGGGTGTTTGCGAGCGAAATTGGTT
TCAATTTGACTTCGTCAAGAAAACAAAAAAAAATGGCTCCATCTTGAGAT
CGCGCTTGAATCCATCCGCATTTTGACGTTCTACGGGGTCTACGGGGTCT
CCGCAAGGTGTACCTTGGCTCACACTACCACCAACCACCAGCGCCCGTCT
GTGGCGTGCATAAGCGCACACGGTCACACACACACACGCCAGTCAGTCCA
GTCCTCTTGGCAAGTTGATGGACCTGGAGAGCCCACACGAACGAGACGTC
CGAGAGCGTTTACAACAAAAAATATCCCCTCTAAAGCCAAGAGATCTCTT
CGAAGACATGGCGCATCCCACCCAACCCGCGACGCCCCAGCAGCAGCAGC
AGCAGCAGCACCTTCACCACCAGTCATACCAGCAGCAGCCACTGCATCCA
CAGCCCGGCCTCACCATCCCTCTCCACCAGGCGCACGGGGTTATCCTGCC
TGCCATGCAGAACCTCTCTTCAGCCCCGCCGGGGTATTCACCGATATACG
CGGCCACAGGCATCTCGGCCGTTGCAGGTCGTGCTCCACTCGCCCCACTA
CCCGTCCTTTCTAGCCAGCCACTCGTCACCGCACATGTGTGTGACACAGG
TGGGACGGCTGGCTACGCAGCAACGCACTGCGTAATGTACTTGCCGACTC
AGAACTCAGAGGCCGGAGAGGCATCGCGGATAGACCGTGACTGTCTGTCG
TTGCCCAACCAGCGCTTGTGGTCGTTACACCGGGAAATTTTCCTCTGAAA
TCGTCCAGATCTTTCAGAGGAAAATTTCCCCAGTTGGCCCAAACTTTTCC
TGGAACTTTCTCTCGGAACAACATTTTCAACCATTCTGGGCCCAAAACTG
GTCGTTAGCGAAACATATTTCCTTATCGCAAACACGTTAATCTGTTCAAA
CATCCTTCGACCAACATCTTCGCTTGTTTTCGAAGGAATATTGGCCAATA
CAAATATTCCTTCGAAAACAAGCGAAGATGTTGGTCGAAGGATGTTGACT
TATATCAGTTTAAACCCAAAAAGTGGGGTCGCGCCGCGTCCCCGAGCTTG
CTCGCGATGAGAGAGCACACACCACACACACACACAGCAACCACAATTTC
ACACCCGGCGCTTGCCCACACCCGGCGCAAGATGGAGTCTGCTTCGAGCG
TAGGAGACAGCGATCGGCATGCGGAGCTCGTCGCCCTTTTGGCAGCAGCA
GCGCAGAAGCGTCGCGCAACTACGTACCCCGTGCCCCGTCTCGGAAGCTT
TCGTGGAAAACTACAAACCCAGGTCTGGACAGCATTCTGGGCCACCAACT
TCTTGGCTTTTCCATAAGATGGCCTGGATGATTTTTCGGTCCAAGGATCT
TGCCCGCAGATATTGTCAGATGGTGAAAGATCCTTCGGTCAACATTCTTT
GACCGTAATAACCAGCCTAAACACATGTACACGGATACGTGCGTATCGGT
GGATGCCGTCGGTGACTTGGTTGCCCAGGTTGGTCAGGTAAATAAATTTT
ACAATCAGAGATTCTAATATGATTAGTCCCCGAAGGACCCCTACAATGTA
CCGCTGCATGTGGCATCGTACAGGCAAAGATGTCCGAATTAAGAAAACGT
CTGCACATCCATACTGCTGTTTGGATCATGAGCTTTTTTGTTTCTCGTAT
GTTTACGATCAATAAAAAAAACACATGAAAATGTTCGCAGACGAGGATCC
AGAGCAGATTTTAGCTAATATACGATCACTGAGAGTAAAATAGCATATCT
TCCTCTGTTTCTACAACTCATCAGATAACAAACCGTTCCATCTCCGAGGG
TATCGGGCTCAATAAAACAATTTGATAGGGATCGTAAATTGTGTGTCACA
CACGGTACATGATTTTTGAGAGCGGCGAGATCGTGACCATGCACCCTCTC
GCCCGATTCGTACAACAAAAATAAGCACGCGACTACACCAGGAGGGTTGA
GAGAAAAAAACATTTCTTGACGGAAAAGTCTGGAAAAATCGAAAAATCAA
ATCTGAGATGATACTTGTCTGTGCATCAAAAACGCTTTTACTTATTATAC
GAGTACTTCGAAGTAATATAATACCTCTGCTGACAATCATAGCGCTCTCC
TAGCACAGCAACAGACAGCGCCTTGATCACTTAGTGAAGTGCCAGTACTT
TTACATATTCGATTCGGGCACATCTGATGTCTTCCTGAGTCGTGCCGGTC
CAGACAATATGAGACGACTTCATCGGACATGCCAGGTACAGCAGTATACA
TAAATCGTATACGGGGCCCCTCCTGCACGATAGACGCCAGTGGAGCTACC
GATGTGTCTGTATCCGTGATCGAACCCTGGAGGTTACGATCCTCTTGCTG
GAGAGAGACGAACACACTGATAATGTCTTTCATGGAGAAAAAAAAAACAT
GTAATAAGCCCCACAGCACGCTGGTCCTGCGTGAGAGGCGGTCGCGGGCC
CTGTACACTTCCGTGAAGGCTATTCTGCGGAGACGGGAGGACCCACGCGT
GTGTGCGGTGTGTGCGGTGTATATGATGCGTGTGGTGTGTGTTGGCTCAT
GCAGGCACAATGTGATACTCTCTTTCAAAACAGTCACTTTGACAAACGTG
AATGGCGATGATCGACATACGTATCAGGTGGTGGCCGTCTCGTCCGCTGG
GCGGCTGCTCTCGCCGGCGGAAAGCAATCCAGCGAACCTTCTCGGCCTCG
CGCAACAACCCCCACCGCGTCGGGCAAGCAGCAGCAGAAGCAGCAGAAGC
AGCAGCAGCAGCAGCAGCAGCAGCGCAGCAGCAACGAGGACGCACCGGCG
CCTTCCGCCAACGAACAAGACAACGGCAGCGGCGGTGGTGGCGGGACCAG
CAGCAACGGGAGCGAGACTGGGGGCGGTGAACCCGCCACCCCCGCCGCCG
CC
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:448407..452408+

>mRNA_P-littoralis_Contig19.98.1 ID=mRNA_P-littoralis_Contig19.98.1|Name=mRNA_P-littoralis_Contig19.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig19:448407..452408+ (Pylaiella littoralis U1_48)
ATGATCGCAATCTCGCACCAGCTTCTCAAGGACAAGGGGGGGAATCCCCG
AAGGGAGATGAGTCGTAACGGCCGGCGGGATGGTCATCGCGACGGTGATC
ATGTTTCAGATCCAGTGCTCCACCTAAGAGCAGAGACGGCAAGCTCGCCC
TTTCCTCGAGCCGCTCCCCCCGACGGCGGCAGCAGCGTGAGTAGCAGCAG
GCAAGCCAGGGGAAGGGGTCACCACAATGGCAGCAGCAACAGGGGGGTTG
ATCAAGAGGAGGCGCTGGGGTCGGATCGGAAGCGTGGCACTCATGGTGGT
GGCCGTCTCGTCCGCTGGGCGGCTGCTCTCGCCGGCGGAAAGCAATCCAG
CGAACCTTCTCGGCCTCGCGCAACAACCCCCACCGCGTCGGGCAAGCAGC
AGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCGCAGCAGC
AACGAGGACGCACCGGCGCCTTCCGCCAACGAACAAGACAACGGCAGCGG
CGGTGGTGGCGGGACCAGCAGCAACGGGAGCGAGACTGGGGGCGGTGAAC
CCGCCACCCCCGCCGCCGCC
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