mRNA_P-littoralis_Contig188.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.61.1
Unique NamemRNA_P-littoralis_Contig188.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A7S2MQ94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQ94_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.120e-48
Identity = 89/220 (40.45%), Postives = 122/220 (55.45%), Query Frame = 1 
Query:  322 DDGMFDPRR-EYWGNGNSNRTDGGVQSTVTTKPARSDWVAAAHGRGLASSSANCGPMSSSDPCCIECFGLSYCDVLNGRKVEDKYFPGEPTILGSCENFEDRASRLEVFGPSK---TFRDTDACREMVIDYTCMWWGSENEMYDNRCGIEAQVP-PCRSFCVQLAKTCANNVMDWQELCRSIDCPPTDEECMPGPYTQASNKDRDEACYLYEYHSPLNAA 966
            DDG F+P   ++WG+ N  R        + T P      ++A       ++A+CG   +  PCCI+C  L YC  +N   +EDKY+P E  I GSC+  +DR  RLE+FGP+    TFRDTD CR +V+DY C+WW SEN+ YDNRC     +  PCRS+CVQ+   CAN+ +DW + C  I+C   +  C  GP       D D  C + EY S  + A
Sbjct:    2 DDGHFNPASFQWWGSVNKTRRQ------LATAPGALTCESSACACETEGNAADCGIDDNQCPCCIQCESLDYCSAINFYVMEDKYYPTENDITGSCDMLDDRIQRLEIFGPASLGYTFRDTDQCRSLVMDYICLWWASENDHYDNRCDYGEDIDRPCRSYCVQVGLVCANS-LDWLDTCYHIECASNEAGCTTGP------DDIDYKCAIPEYISSFSGA 208
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A835Z6T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.350e-44
Identity = 93/253 (36.76%), Postives = 119/253 (47.04%), Query Frame = 1 
Query:  445 HGRGLASSSANCGPMSSSDPCCIECFGLSYCDVLNGRKVEDKYFPGEPTILGSCENFEDRASRLEVFGPSKT-----------------------------------------------FRDTDACREMVIDYTCMWWGSENEMYDNRCGIEAQVPPCRSFCVQLAKTCANNVMDWQELCR--------------------------SIDCPPTDEECMPGPYTQASNKDRDEACYLYEYHSPLN--AAVIRG 978
            HGR L +    CG   +  PCC+ C GL+ C VLN   VE+KY+PG    +GSC NF+DR SRL VFGP KT                                               FRDT  CR+ V  YTC+WWG++N  +DNRCG  A  PPCRSFCVQ+A+ CAN+   W                                I CPP  ++C+PGP+   ++    +AC+LYEY+SPL   AA +RG
Sbjct:   44 HGRQLQT---GCGVAPNPVPCCVLCLGLNQCSVLNSYAVEEKYYPGSSGTVGSCTNFDDRVSRLAVFGPEKTVWXXXXXXXXXXXXXXXSCDAAQVXXXXXXXXEKTVSXXXXXXXXXXFRDTPDCRKWVYAYTCLWWGTDNAHFDNRCGSFANRPPCRSFCVQVAEVCANDP-GWNAAAXXXXXXXAAAQVXXXXXXXXXXXXXXXGIACPPIADDCVPGPFV--THPVEPDACFLYEYNSPLQGGAAAVRG 290
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A7S2C5P0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5P0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.520e-42
Identity = 91/237 (38.40%), Postives = 117/237 (49.37%), Query Frame = 1 
Query:  316 FVDDGMF-----DPRREYWGNGNSNRT-----------------DGGVQSTVTTKPARSDWVAAAHGRGLASSSANCGPMSSSDPCCIECFG--LSYC-DVLNGRKVEDKYFPGEPTILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCMWWGSENEMYDNRCGIEAQVP-PCRSFCVQLAKTCANNVMDWQELCRSIDCPPTD-EECMPGPYTQASNKDRDEACYLYEY 945
            F+DDG F     +P R+ W N +   T                 D  V+    T P  S +              +CG      PCCI C    +SYC D L G+ +ED+Y+P E  I GSC+N ++R   L+VFG  KTFRD D CR++V +Y C+WWGSEN  Y+NRC    Q   PCR FCVQ+   CANN  DW  LC  I C   D  EC P PY+ +        C +YE+
Sbjct:   53 FIDDGYFTPGKHNPFRQRWANASDATTKLAPKRKLAADDNLYDDDTSVKKMDCTNPDCSCYYDEYDDE-------DCGTSDEECPCCIRCLNEEMSYCHDALGGKLLEDQYYPTEKGISGSCDNLDERVGALDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTSF------LCSVYEF 275
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A8J2WWI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWI3_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.160e-42
Identity = 88/225 (39.11%), Postives = 121/225 (53.78%), Query Frame = 1 
Query:  304 WWKPFVDDGMFDPRREYWGNGNSNRTDGGVQSTVTTKPARSDWVAAAHGRGLASSSANCGPMSSSDPCCIECFG-LSYCDVLNGRKVEDKYFPGEPTILGSCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCMWWGSE--NEMYDNRCGIEAQ--VPPCRSFCVQLAKTCANNVMDWQELCRSIDCPPTDEECMPGPYTQAS-NKDRDEACYLYEYHSPLN 960
            W   +VDDGMFDPR            D     T  T+  R +                     ++D CC  C   L  C  + G  VEDKY+P E ++ GSC++ + R + L+VFGPSKTFRD D CR +V +Y C+WWGSE  ++  +N C  +    V PCR FCVQ+A  CAN+ +D+Q LC++I CPP +E CMP P + A+    +  ACY+Y Y +  N
Sbjct:   79 WEAGWVDDGMFDPREH----------DPRFMVTNATRRRRLEE----------------NRCEAADICCSLCKNDLQTCWRMAGYLVEDKYYPSEQSVTGSCDDIDRRVANLDVFGPSKTFRDNDLCRRLVNEYMCLWWGSEGVDQSSENHCSSKGVILVAPCRPFCVQVAIQCANS-LDYQRLCQAIPCPPIEETCMPEPRSVATVTLSKTMACYVYRYSTLAN 276
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A7S0SRC5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRC5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.940e-34
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:  484 PMSSSDPCCIECFGLSYCDVLNGRKVEDKYFPGEPTILGSCENFEDRASRL--EVFGPSKTFRDTDACREMVIDYTCMWWGSENEMYDNRCGIEAQV-------------PPCRSFCVQLAKTCANNVMDWQELCRSIDCPPTDEECMPGPYTQASNKDRDEACYLYEYHSP 954
            P +S  PC I C GL YC  +NG  +++ Y+P + ++LGSC   E    R+  E+FG   T+RDT  CR +V+ Y C+++GS N+MY N C  +  V             PPC+SFCVQ+A  CAN+ +D+  +C  I CPPT++ C P P         +  C +  Y +P
Sbjct:   41 PYTSEVPCVI-CRGLKYCSAINGLMLQEVYYPYDLSLLGSCYVLEAFGKRIYSEIFGNGGTYRDTVECRSIVMQYLCLFYGSNNDMYTNYCIYQEDVSDANPANHKVAPRPPCKSFCVQVATVCANDPVDFLYICNEIACPPTEDACNPDPLVDGETLSANLGCDVPIYSNP 211
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A7S2RFQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFQ7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.620e-31
Identity = 74/179 (41.34%), Postives = 105/179 (58.66%), Query Frame = 1 
Query:  469 SANCGPMSSSDPCCIECFGLSYCDVLNGRKVEDKYFPGEPTILGSCENFEDRASRLEVFGPSKT---FRDTDACREMVIDYTCMWWGSENEMYDNRCG-IEAQVP--PCRSFCVQLAKTCANNVMDWQELCRSIDC---PPTDEE----CMPGPYTQASNKDRDEACYLYEYHSPLNAA 966
            S +CGP   +  C   C  L +C VLN   +ED YFP  P   GSC   E+RASRL+++G  +T   F+DT  CR +V++YTC+ W +   M+ +RC  +  QVP  PCRSFC ++A TCAN+ +DW  +C +I C   P +D E    C PGP   +S+K     CY+ +  SP ++A
Sbjct:  141 SQSCGPPPLTACCNASCSSLEHCAVLNDMVIEDTYFPTLPATHGSCLELEERASRLDLWGDYRTNKPFKDTPQCRSLVLNYTCLTWAT---MFPSRCSDLSEQVPRAPCRSFCTEVATTCAND-LDWINICHNIVCDTYPSSDIENRSACTPGPLDTSSSK-LFGGCYVPKLVSPRSSA 314
[Close]
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Match: A0A7S2FUR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.930e-25
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  634 LEVFGPSKTFRDTDACREMVIDYTCMWWGSENEMYDNRCGIEAQVP-PCRSFCVQLAKTCANNVMDWQELCRSIDCPPTD-EECMPGPYTQASNKDRDEACYLYEY 945
            L+VFG  KTFRD D CR++V +Y C+WWGSEN  Y+NRC    Q   PCR FCVQ+   CANN  DW  LC  I C   D  EC P PY+ +        C +YE+
Sbjct:    8 LDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTSF------LCSVYEF 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2MQ94_9STRA3.120e-4840.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z6T3_9STRA2.350e-4436.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C5P0_9STRA1.520e-4238.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2WWI3_9STRA2.160e-4239.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0SRC5_9STRA3.940e-3437.79Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2RFQ7_9STRA2.620e-3141.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FUR6_9STRA1.930e-2549.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:309508..315062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008868171.1
Model size1041
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.33e-15
EggNOG OGs2CHWE@1|root,2S3Q4@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002790.1
Cds size1041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.61.1prot_P-littoralis_Contig188.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 309508..315062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789899.3352442-CDS-P-littoralis_Contig188:309507..3099491680789899.3352442-CDS-P-littoralis_Contig188:309507..309949Pylaiella littoralis U1_48CDSP-littoralis_Contig188 309508..309949 +
1680789899.352109-CDS-P-littoralis_Contig188:310540..3106561680789899.352109-CDS-P-littoralis_Contig188:310540..310656Pylaiella littoralis U1_48CDSP-littoralis_Contig188 310541..310656 +
1680789899.3605053-CDS-P-littoralis_Contig188:311643..3117421680789899.3605053-CDS-P-littoralis_Contig188:311643..311742Pylaiella littoralis U1_48CDSP-littoralis_Contig188 311644..311742 +
1680789899.3702555-CDS-P-littoralis_Contig188:313279..3133871680789899.3702555-CDS-P-littoralis_Contig188:313279..313387Pylaiella littoralis U1_48CDSP-littoralis_Contig188 313280..313387 +
1680789899.3838599-CDS-P-littoralis_Contig188:314291..3144381680789899.3838599-CDS-P-littoralis_Contig188:314291..314438Pylaiella littoralis U1_48CDSP-littoralis_Contig188 314292..314438 +
1680789899.3967848-CDS-P-littoralis_Contig188:314933..3150621680789899.3967848-CDS-P-littoralis_Contig188:314933..315062Pylaiella littoralis U1_48CDSP-littoralis_Contig188 314934..315062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.61.1

>prot_P-littoralis_Contig188.61.1 ID=prot_P-littoralis_Contig188.61.1|Name=mRNA_P-littoralis_Contig188.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=347bp
GHRKRRLPKSATASASAATAVSAAMTAMLRHRDPTMWSIFSNQQLQPSKH
THSSSSSSNCRRKSLTIFRFSAAVMAAATAIAVEAGTAQVAAAAEAAGAV
PWWKPFVDDGMFDPRREYWGNGNSNRTDGGVQSTVTTKPARSDWVAAAHG
RGLASSSANCGPMSSSDPCCIECFGLSYCDVLNGRKVEDKYFPGEPTILG
SCENFEDRASRLEVFGPSKTFRDTDACREMVIDYTCMWWGSENEMYDNRC
GIEAQVPPCRSFCVQLAKTCANNVMDWQELCRSIDCPPTDEECMPGPYTQ
ASNKDRDEACYLYEYHSPLNAAVIRGGGGYYSPGTVAVAAAALVVVV
back to top

mRNA from alignment at P-littoralis_Contig188:309508..315062+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.61.1 ID=mRNA_P-littoralis_Contig188.61.1|Name=mRNA_P-littoralis_Contig188.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5555bp|location=Sequence derived from alignment at P-littoralis_Contig188:309508..315062+ (Pylaiella littoralis U1_48)
GGTCATCGCAAGAGACGTCTACCCAAGTCTGCAACAGCATCCGCATCAGC
AGCGACAGCTGTGTCGGCAGCAATGACGGCGATGTTGAGGCACCGTGACC
CTACCATGTGGTCGATTTTCTCGAACCAGCAGCTGCAGCCGTCGAAACAT
ACCCACAGCAGCAGCAGCAGCAGCAACTGTAGACGTAAGTCGCTGACAAT
TTTCCGCTTTTCAGCAGCAGTAATGGCGGCAGCGACGGCAATAGCCGTTG
AAGCTGGTACGGCCCAAGTGGCGGCGGCAGCGGAGGCGGCGGGGGCGGTG
CCATGGTGGAAGCCGTTCGTCGACGACGGCATGTTTGACCCGCGACGAGA
ATACTGGGGTAATGGCAATTCAAATAGAACAGACGGTGGTGTGCAGTCGA
CGGTGACGACGAAACCAGCACGTTCCGACTGGGTGGCAGCCGGTGAGTGA
GCTACAGTGGTAGAGAGCGCGTCCTTCGATGGCAAGCGCGTCAGCAGAGC
AGCGATAGACCTCCCGTGTCTACTTACAGGCCCATTCCTCTGGCCCGTGT
ATGATGGATATCCCCATTTTTACACCGTGAAACCCAACGTTGTCGCATGA
ACATTATTCGTACGTACAGCAGCCATGTTTGGATCGATGAAAAGCGTGCA
CTCTGTGTACTTCTACATATTAGCAGGACCCGAACGGCAAACCTACAGCT
ACAGTAGTACCACCACGTGTGCGAACGTGTGTGTGTGTTAGTGTGTGCGT
GCGTGTGTGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
CTGTGAGTGTTACCCCCCGTCTTTGCTGGAAGCCAGTCTGCGCCATTCGG
CATATGTGTGGGCGCATCAGGTGGGGTCAAAGACAGACACAGAGTGGAGA
TCTTGACCTACCAGCGTTCTTCACGATTGGTCGAGTTTTTTGCGTCGTTC
CTCGTTGAAGCTAACAAACAAACCTTCCGTGTCAACAGCTGTTGCTGCTG
CTGCGCGCGACAACGAATGAACTACTGTACCAGCCCACGGCAGGGGCCTG
GCGTCGTCGAGCGCCAACTGTGGCCCGATGTCATCCTCGGACCCGTGCTG
CATCGAGTGCTTCGGCCTTTCCTACTGCGACGTGCTAAACGGGCGCAAGG
TGCATCTTCTATTGTTGTTGTTCCTGCTACGTCTGCCTGGTTGCTTACGG
CGTCCAGTAGAGTCGTGTTGTAAGGCAGCGAATAATATGTATTTGGCGAC
GTTTGCAGTGCAGTCTCAGTCTCAGGGTGCATGCATGCACTCTCTCTCAC
GTTTTGAACGAGCAAAAGATGCGGCTGGCTCTACTCTCGCCCAGAATGTT
TCGCTGCTGAGAACGAGCTCAGACAACTTTGATTTTGGTGTCGTGCCTAC
CTGCGTTCGGTTTGTGAAAAATGCTGAAGCTTTGGCTACGAGGTTTTGAT
CGGGGGGCGCGACAAGTCATTGTCACGTTTCGCCACCATTCCTTCAGCGG
TGACAGCGAAGTAACTCCCGTAATACAAACACTTGAATCATTTACTTGTG
TGTTTGCCTACATTTTGGCCAAGGAGAAAGAGGAGGGAGTCGTCCCTCAC
CAAGATTTCAACTCACATGAAAGAGAGCAAGAACAATATGAGCAACATAT
CGAATTACGGTTAAGCATCATGTTGGTATGTGTTCGGCTCCGCCACTGCC
ATAGTACTACACTGGTGCTGCTGAGTTGAAACGATTGTTTCCTGCTGTTC
TTGCTCTCTTTCATGTAAGTTGTAATCTTGGTGAGAGACGTCTCCCTTCT
CCTTCTCCTTGGCCAAAATGGGTACAAAGACACACGTAAATATTCCACGC
AATTCCAATGAAACATAAAACATTTCACTAACAACCAGGTACCGTGTGGC
CAGAAACGCTGTGTTGCAGGAGAAACATACCGGTTGTAGTACAAATCTAT
GCACATTACGATATGGACCGACGAGGAAAGCATTCACAATATAATAAACG
TTTCCAACCTCGTGCCCGTGGCTAGAGGCATATTTGATACGTGCTACCGA
GTACCTTATTGCACCACAAGCGGGAGGTACTGCACGAAGTACGAATTGAA
AAGTATCGAAAATTTATCGTGACGTTATCAAACCAGGTGGAGGACAAATA
CTTTCCAGGCGAGCCTACCATCTTGGGATCGTGCGAAAACTTCGAAGACC
GGGCGTCGCGCTTAGAAGTCTTCGGTCCCTCCAAGGTGCGCCACATTTTA
CATAGAAATGCCTTCAGGCACAGAGTTTCTGACGGTCCATCGACCGGGAA
TACACTATAGGTTTGAGCTCGGCCATCAAGTTTTGAAAATGTGAAAGCTT
AAGCTTGTTCGATAGGTGAGCCTATCCACTCGTCCACTCAGTCAGCGCTG
ACTGAGTGGACCAGTGGAAAGGCTCACTTAACGAACAAAATATATGCTTC
GGGAGTTCAATTTGTTCGTAAGATGGACATATCTACCGGTCCACTCAGTC
AGCGCTGACTGAGTTGACCAGTGGATATGTGCATCTGACGAAGAAAAGAT
ACGCCGGGAGTTCGATCCTCACCGTGTGTAGCGCCTTCTCCTGTTGAGGA
AAAAGTGCGCGCGTCGGATGGCGGGTGAAAAAGTCCCGCTATCCACTGTC
GAACACGTACGTAGCGCTGGCGAGGGGTTCGGCCCGGAGATAAATGCCTG
GCGATGAAAGAGGGAATTGGACCCCCAAAGAATATCTTTCGTTCGTCAGA
TGGACATATCTACTGGTCCACTCAGTCAGCGCCGACTAAGTGGACCGGTG
GATGTGTCCATCTGACGAACAAAATTCCCTGTTTTCCTCGCCAGGCAGTG
ATCTCCGGGGCCGAACCCCTCGCCAGCGCTTCGTACCTGTTCAATAGCGG
TTTGTTGGCCAATCAGACTGATCAGCCCGCTTTGTTGTCCGGCGCCTGGA
GCGGTGTGCCTGCCGCCCCCGTGACTCCCATATCCACTAGTACACTCAGT
CGGCGCTGACTGAGTGGACTAGTGGAAAGGCTCGCCTAACGATCAAAGCT
TTCGTCGGTTGGTGGTTTACCAGAAAGTGCATAGTACCGTAAGATCCTCT
TTTACCCCGTCCCTCAAACAGATCATAGTCTGACCAAAAGATTTTTTGGA
GTTTTCGTACAGCTCTCGGCCGACGATATTAATCTTTCGGACGCCAGTCA
CCCTTCTGACGCCCTGATTACTGCTTTTTGTGGAGATGTTAAGCTTCAAA
AAACGGTCAGAGGGGGGTGGCGACGTAGGAGGATGAAACGGTAGCATGAC
AGGACGTCGCCGAGAGCAAGGCCTGATTGATGCCGCAAAACAAAGAACAA
AAGTGGTATCAAGCATACTTCTGAGCAAAACAGCGTGGTCTCCTCCTTTA
CACGTGGGCTACTACTGCTGCATGATACAGCCGATCGTAAAATACAAAAA
ACAAATCATGATAGCTGGGCGTTCCTTGTTCACAGGGTATGATAGTGGTG
CAAGCTCCTTCCTGAAAAACAAATATAATCTCCTCAGAAGTGATGATCTC
TACGTTTCGAGGCTCGGACGGACGTAACCCGACCGTAAAATCAAATCTAA
TTAACGAGGCGCTTTTTGTTTCCTTGAGGTGGGGTGTGGTACCTTCTCTA
ATGCTTGAGTCTACAGTTTAAAACCTGTGCTGCTACATATTATACTGAAA
GAATCCTTTGAACGTGGGGAAAATATGTAAAAACATGATTTTCTCGCTGA
ACATCTCTCTCGAATTTTCGAGACGTTTCGAGACACGGACGCCTGTCGAG
AGATGGTTATCGACTACACGTGCATGTGGTGGGGCAGCGAGAACGAGATG
TACGACAACCGCTGCGGCATCGAAGCTCAGGTGGGTGTCGAAAACAATCT
TCAGAGATTTTCAGACAGACAGAGAGACAGACAGACAGAGAGACAGACAG
ACAGACAGACAGACAGACAGACAGAGAGACAGACAGATAGACAGACAGAT
AGACAAACAGACAGAGACGATAGTCCGCACGTGGGACATTTATCTCTATT
TTATTTATCTACAGCAGCACAAAATATTCACATGATTTGCTTTTGTTTTA
CGACTACGATCAGGTGCTAATGTTTATCATCCGATTTGGGATATTATTGT
CGGCAGCGCTATTGCAGCATACGGCAGCAACTCACGCGGCAGGAGTATCA
TGCGTGTCCGTTATGTAACTGTTTTTTGTTTCGGCCGGGTGTTGCAAGCC
CGGTATATGTTGTCCGTTCGCCCTCCGTATTGCAAGCCGAGCGGCGCGTC
CCTTTCCAAGGACGCGATTCATGTACTCCCTCAAACTCGCGTGCGGTTTC
TCTCATCACGTGGATAAAGTACTCGATTTCCCTCACAAATTTTTCATTTC
GGGGTGTCTTCGTCCTACCAGTATGTGGCAACCGATATTTACGGTCAAAT
AAAAAACGAAGGAAAGCTTCGTGAAACTAGTCCTCCTCTGCATCAAAACG
CTACGAGTAGTAATGTTCATGAGAGGGACCAAGCGGGCGCACACAAGAAC
AACACGAAGCGAGCTTCTCTCTCAGCTGTTGAAGGTGGCCCCGGTCAGAG
GGACAGCACAGCGGGGCGTTGATGTGTGTATGATGTGTTTCTTTCTTGAA
ATAAGTGCGCTTGTGATAGAATGGCGAGATTTGTAAGTGCCGCGCACAAC
CATTTACGAATATTGAGCGCCCCTCCCCCCCCCCACTTCATCACCCCTCT
CCCGACCCTTCCTCCCAATCCTGAAACTAAAAAGGTGCCCCCGTGCCGGA
GCTTCTGTGTCCAGTTGGCAAAGACTTGCGCCAACAACGTGATGGATTGG
CAGGAGCTGTGCCGATCGATCGATTGCCCCCCCACGGACGAGGAGTGTAT
GCCGGGCCCCTACACGCAGGCAAGTAATAAGGTGGAATACGCGGTTTGAG
AATGACAAGCAATGTTTTTTTATAAAGTTTTAACTTATTATAACAACAGT
GCTTGTACCGTCGTAGCAGCGGCAGCAACAGCGGTGGCAGCGGTGGCGGC
GGTGGCGGCTAATACATTGGTAGAGCGCAATAGCGTGTCGCCAAAAGGGG
CACAGTGTCGGTGGATTCTCTCCCACTAGTCCCGCCCCCCCTACTCGTGC
ACATATAGGTATAAAAGCCCCCGCCTCGTCAGTCTTCTTTCCTGCGAGTG
TCCGTTTCACTCACGACTTTCCTCCCCGCCCATCAACATCGCCAAACGTT
TGCTGGATTCTATCTGTATGTCAACCGATATTCCGCTGAACGCTGGGTGA
ATGCATCGGATAATTTCCCTCCTTGCCCAAAAACTTTGCCGAAAGTGTAC
TAGATTATATCTTCATGTCTACCGATATTCCCGCTGAACGCTGGGTGGAT
GCATTGGATGATATGTATGTGTACAGGACCGTGATGAGGCTTGCTACCTG
TACGAGTATCACTCGCCGCTCAACGCCGCCGTCATTCGAGGGGGGGGGGG
GTATTATTCCCCTGGAACGGTTGCGGTTGCTGCCGCGGCGTTAGTGGTTG
TCGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig188:309508..315062+

>mRNA_P-littoralis_Contig188.61.1 ID=mRNA_P-littoralis_Contig188.61.1|Name=mRNA_P-littoralis_Contig188.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1041bp|location=Sequence derived from alignment at P-littoralis_Contig188:309508..315062+ (Pylaiella littoralis U1_48)
GGTCATCGCAAGAGACGTCTACCCAAGTCTGCAACAGCATCCGCATCAGC
AGCGACAGCTGTGTCGGCAGCAATGACGGCGATGTTGAGGCACCGTGACC
CTACCATGTGGTCGATTTTCTCGAACCAGCAGCTGCAGCCGTCGAAACAT
ACCCACAGCAGCAGCAGCAGCAGCAACTGTAGACGTAAGTCGCTGACAAT
TTTCCGCTTTTCAGCAGCAGTAATGGCGGCAGCGACGGCAATAGCCGTTG
AAGCTGGTACGGCCCAAGTGGCGGCGGCAGCGGAGGCGGCGGGGGCGGTG
CCATGGTGGAAGCCGTTCGTCGACGACGGCATGTTTGACCCGCGACGAGA
ATACTGGGGTAATGGCAATTCAAATAGAACAGACGGTGGTGTGCAGTCGA
CGGTGACGACGAAACCAGCACGTTCCGACTGGGTGGCAGCCGCCCACGGC
AGGGGCCTGGCGTCGTCGAGCGCCAACTGTGGCCCGATGTCATCCTCGGA
CCCGTGCTGCATCGAGTGCTTCGGCCTTTCCTACTGCGACGTGCTAAACG
GGCGCAAGGTGGAGGACAAATACTTTCCAGGCGAGCCTACCATCTTGGGA
TCGTGCGAAAACTTCGAAGACCGGGCGTCGCGCTTAGAAGTCTTCGGTCC
CTCCAAGACGTTTCGAGACACGGACGCCTGTCGAGAGATGGTTATCGACT
ACACGTGCATGTGGTGGGGCAGCGAGAACGAGATGTACGACAACCGCTGC
GGCATCGAAGCTCAGGTGCCCCCGTGCCGGAGCTTCTGTGTCCAGTTGGC
AAAGACTTGCGCCAACAACGTGATGGATTGGCAGGAGCTGTGCCGATCGA
TCGATTGCCCCCCCACGGACGAGGAGTGTATGCCGGGCCCCTACACGCAG
GCAAGTAATAAGGACCGTGATGAGGCTTGCTACCTGTACGAGTATCACTC
GCCGCTCAACGCCGCCGTCATTCGAGGGGGGGGGGGGTATTATTCCCCTG
GAACGGTTGCGGTTGCTGCCGCGGCGTTAGTGGTTGTCGTC
back to top