mRNA_P-littoralis_Contig188.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.2.1
Unique NamemRNA_P-littoralis_Contig188.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:13380..14403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size416
Hectar predicted targeting categorymitochondrion
Exons3
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789896.6448019-UTR-P-littoralis_Contig188:13379..134051680789896.6448019-UTR-P-littoralis_Contig188:13379..13405Pylaiella littoralis U1_48UTRP-littoralis_Contig188 13380..13405 +
1680789896.688325-UTR-P-littoralis_Contig188:14244..144031680789896.688325-UTR-P-littoralis_Contig188:14244..14403Pylaiella littoralis U1_48UTRP-littoralis_Contig188 14245..14403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789896.6540835-CDS-P-littoralis_Contig188:13405..134171680789896.6540835-CDS-P-littoralis_Contig188:13405..13417Pylaiella littoralis U1_48CDSP-littoralis_Contig188 13406..13417 +
1680789896.669358-CDS-P-littoralis_Contig188:13635..137101680789896.669358-CDS-P-littoralis_Contig188:13635..13710Pylaiella littoralis U1_48CDSP-littoralis_Contig188 13636..13710 +
1680789896.6785872-CDS-P-littoralis_Contig188:14100..142441680789896.6785872-CDS-P-littoralis_Contig188:14100..14244Pylaiella littoralis U1_48CDSP-littoralis_Contig188 14101..14244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.2.1prot_P-littoralis_Contig188.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 13406..14244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.2.1

>prot_P-littoralis_Contig188.2.1 ID=prot_P-littoralis_Contig188.2.1|Name=mRNA_P-littoralis_Contig188.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MARASVLPQTRSSVKMGCPAIVERPATSASPRKHPLGDIRPRRTLSGRYS
SMPWSSPEWMSGAEIGRWLDRRHVHP*
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mRNA from alignment at P-littoralis_Contig188:13380..14403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.2.1 ID=mRNA_P-littoralis_Contig188.2.1|Name=mRNA_P-littoralis_Contig188.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-littoralis_Contig188:13380..14403+ (Pylaiella littoralis U1_48)
CGTGAATCTCTCCGAGGGCACTGGCGATGGCACGTGCGGTGAGATAACGC
GTGTGTGGTTCTCCATATTTGCTGAAAGCACAACTCAGCCTTTACATCGG
GCCGCACACATAGTCCATGTGGATGAAAATAGCGCTGGTATGCATATAGA
TGCGATTCATTTTCTACACGTTGTTGCTTTTGGGCTTCCCGACAGTTTTT
TCAACCCGACAAGTGACTGATTGTCCCATAACTCATGTTCTCCCTGCGCC
GCCCAGAGTGTTCTCCCGCAGACGCGGTCTTCTGTGAAGATGGGTTGTCC
TGCCATAGTGGAACGACCGGCTACATCTGCGGTGAGTTTGCGCGGGCAGT
TGTCGTTGGTCTTGCCGCATGAATCTAGGGGTCTAATACCTGGTCTTGGG
GCGCAATCTCACCAATTTCCGAGGTTTGGGTAGTTGGCGATGTTGTCTGC
AGTGCGGTAGCGTATCCAAACCGCCAGCGCACTCGTATGATGTGGTATGC
CCCTGAGCACGGAATGTTTGTTTTGGTCGCCCCTTCGATCAAGGAATCTT
ACTGTGTTTGACATATGATGCCCATCGAATGAAGTCGACATATATGGGAA
GGCTGAGGATGTGGTACAGCCCCGACCTAGCATTGTCCTTTTGAGTTGAT
GCCGGCCCACTGTCACACCAACCCCAATCTTTCACGTCTGGTGCTTTTGT
CGCCGGCCTTCTGTTTGTCAGTCGCCTAGAAAACATCCATTGGGCGATAT
AAGACCTCGTCGGACCTTGTCGGGTCGCTACAGCTCAATGCCGTGGTCAT
CTCCCGAATGGATGTCCGGGGCAGAAATAGGCAGATGGCTCGATCGACGA
CATGTCCATCCTTGACCAAGCACACGAACGACGATGAACCGCGCCTCGAC
GGTGTAGAAAATAGAAAGGGCGTACACGGCGCACCGGCGTATTCTCAGAT
CGATGTGTACCTCGCTTTCCATTAGTGCCGTGCGGTTGTGCAACAAGTCT
ACCGTAGATTACACAAGGAAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:13380..14403+

>mRNA_P-littoralis_Contig188.2.1 ID=mRNA_P-littoralis_Contig188.2.1|Name=mRNA_P-littoralis_Contig188.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig188:13380..14403+ (Pylaiella littoralis U1_48)
ATGGCACGTGCGAGTGTTCTCCCGCAGACGCGGTCTTCTGTGAAGATGGG
TTGTCCTGCCATAGTGGAACGACCGGCTACATCTGCGTCGCCTAGAAAAC
ATCCATTGGGCGATATAAGACCTCGTCGGACCTTGTCGGGTCGCTACAGC
TCAATGCCGTGGTCATCTCCCGAATGGATGTCCGGGGCAGAAATAGGCAG
ATGGCTCGATCGACGACATGTCCATCCTTGA
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