mRNA_P-littoralis_Contig185.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: D7FHR7_ECTSI (ABC-type spermidine/putrescine transport system, ATPase component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR7_ECTSI) HSP 1 Score: 465 bits (1196), Expect = 1.170e-154 Identity = 239/323 (73.99%), Postives = 276/323 (85.45%), Query Frame = 1
Query: 178 LSLLAVCCAALLFREARAYSGTVPIFPDVAAGKKQEAAKAYEMQCKRRPKVFAPRAVIKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRDIVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRRVDLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTAD-DYAVVMELGRQVVEFDDGKITEVSVHEKSRYARRVFEGIRRDIDEEARRFRAQSDGSTLSSLLTFS 1143
L L A ++L +E RAYSGTVPIFPD+AAGK + AA AYE QC++RPKVFAPRAVI+A L+K FDTHHIFF+DEHV ALD VTA+IHGPGSVA+VGPWNSGKSTFLKCLAGLE PT G++TVSGLRK VYVGR I STTGK +R L+REEVAS LPG GR VELTTNT+L AL+LHGVSL+KDR DLSGGEVYRFA+AMALARGCGSPTPPVLLLDDMF++SD+RVR GVEF LF LQ++MGVML+FTA + AVV ELGRQV EF +GKI EV+VHEKSRYAR++FE +RRDI+E+ARRFR QSD +L+S LTF+
Sbjct: 14 LLLAATAAFSILPQETRAYSGTVPIFPDIAAGKSKAAAVAYEAQCRKRPKVFAPRAVIRATDLTKVFDTHHIFFKDEHVTALDGVTADIHGPGSVALVGPWNSGKSTFLKCLAGLEAPTSGEITVSGLRKPVYVGRAITSTTGKTVRQLLREEVASHLPGKNNGRQVELTTNTLLGALELHGVSLTKDR--DLSGGEVYRFAMAMALARGCGSPTPPVLLLDDMFDRSDKRVRQGVEFTLFDLQKKMGVMLMFTAPGNDAVVQELGRQVAEFSEGKIEEVTVHEKSRYARQMFELMRRDIEEQARRFRRQSDADSLASFLTFA 334
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A836CP28_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP28_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.470e-26 Identity = 79/260 (30.38%), Postives = 127/260 (48.85%), Query Frame = 1
Query: 328 VFAPR-AVIKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRDIVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRRV----------------------------DLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEVSV 1020
++ P+ A + + L+K F + +FF +ALDDV+ ++ G +A++G SGK+TFLK LAG E+P+ G V ++G + VY+ R + VR +A + P E+ + +L ++L + K DLSGGEV RF +AMALA G P PPVLL D+ + DQRVR VE + +L GV ++F++ V+EL + F +G++ ++ +
Sbjct: 48 IWTPKPAEVVTHSLTKVF-SKDLFFAQNRERALDDVSISVSCAGPIALIGDAGSGKTTFLKILAGKESPSSGTVDITGDHRMVYLTRHFAHDPRHTVAANVRARIARAAPAQHAEAVAEIA-DRLLRMVELGAKAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGGEVLRFGLAMALAAGVAGPEPPVLLCDEFLDHEDQRVRVRVEGVMRRLLNVHGVGILFSSHSMNTVLELSDAAIVFSNGQVIQMRI 305
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A3N2GVX6_9PSEU (Oligopeptide transport system ATP-binding protein n=2 Tax=Amycolatopsis thermoflava TaxID=84480 RepID=A0A3N2GVX6_9PSEU) HSP 1 Score: 95.5 bits (236), Expect = 5.120e-18 Identity = 74/232 (31.90%), Postives = 108/232 (46.55%), Query Frame = 1
Query: 328 VFAPRAVIKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD-----IVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVS--LSKDRRVDLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGK 1002
V I+A GL KTF + AL ++T ++ ++A+VG +GK+T ++C+AGLETPT G+ + G A GR + A+ + V SS+ ++GR + E L L G++ +KDR SGG++ R IA ALA P P VLL D+ + D V+ + L KLQ+E G V D AV L V+ GK
Sbjct: 5 VIGTAPAIEAIGLGKTFGGRGRVKRE----ALAEITFSVERGRTLAIVGESGAGKTTLVRCIAGLETPTSGETLIHGAPHACRAGRVSPVQMVFQNPSDALDSM--RSVGSSIAEPLRGRSRAARRARVTELLSLVGINPARAKDRPRSFSGGQLQRIVIARALA-----PEPSVLLCDEPTSALDVSVQAQIINLLLKLQKEHGFAAVVVTHDLAVAKVLADDVLVLRHGK 225
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A3A6QNE9_9EURY (ABC transporter ATP-binding protein n=1 Tax=Halonotius pteroides TaxID=268735 RepID=A0A3A6QNE9_9EURY) HSP 1 Score: 95.1 bits (235), Expect = 2.940e-17 Identity = 73/216 (33.80%), Postives = 109/216 (50.46%), Query Frame = 1
Query: 409 HVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLR------KAVYVGRDIVSTTGKAIRHL-VREEVASSLP-GNVKG-RDVELTTNTILEALDLHGVSLSKDRR-VDLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEVSVHE 1026
HV AL+ ++ +I +VGP GK+T L+ +AGLETP+HG V++ G +A VG IV HL V + V L ++ G RD E +LE +DL G DR +LSGG+ R A+A ALA P P VLLLD+ + D R+R + + +QR++G+ V+ D A + + ++ G+I +V E
Sbjct: 27 HVTALESISLSIADGAFFTLVGPSGCGKTTLLRSIAGLETPSHGKVSIGGRDVTTEPPEARNVG--IVFQNYSLFPHLSVADNVGYGLQFHDLSGQRDPEARVAELLELVDLPGFG---DRTPTELSGGQKQRVALARALA-----PEPDVLLLDEPLSALDARLRAKLRVQIKTIQRDLGITTVYVTHDQAEALAISDRIAVIQQGQIQQVDTPE 232
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A1Y2T3P6_SYMTR (Spermidine/putrescine ABC transporter ATP-binding protein (Fragment) n=1 Tax=Symbiobacterium thermophilum TaxID=2734 RepID=A0A1Y2T3P6_SYMTR) HSP 1 Score: 90.5 bits (223), Expect = 1.120e-16 Identity = 73/240 (30.42%), Postives = 121/240 (50.42%), Query Frame = 1
Query: 340 RAVIKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD-----IVSTTGKAIRHL-VREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRRVD-LSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEVSVHEKSRY 1038
R+ ++ L K F++ + V+A+++VT + V ++GP GK+T L+ +AGLETPT G++ + G R +V + +V HL V E VA L K D E+ + E L++ G+ DR+ + LSGG+ R A+A AL +P VLL D+ + D ++R V ++ +LQR++GV V+ D M + VV ++G++ + EK Y
Sbjct: 2 RSTLRLENLVKEFES-----KKRTVRAVNNVTLDFPAGAFVTLLGPSGCGKTTILRMIAGLETPTSGEIYLDG-RPITHVPPNKRETAMVFQNYALFPHLTVFENVAYGLRLR-KVPDAEVK-RAVYEKLEMMGLGDMADRQPNQLSGGQQQRVALARALVM-----SPKVLLFDEPLSNLDAKLRVQVRQDIRELQRKLGVTTVYVTHDQEEAMAISDYVVVLNNGEVQQAGTPEKVYY 228
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A1H6W2P2_9EURY (Thiamine transport system ATP-binding protein n=2 Tax=Halohasta litchfieldiae TaxID=1073996 RepID=A0A1H6W2P2_9EURY) HSP 1 Score: 92.4 bits (228), Expect = 2.360e-16 Identity = 82/249 (32.93%), Postives = 117/249 (46.99%), Query Frame = 1
Query: 412 VKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD----IVSTTGKAIRHL-VREEVASSLP-GNVKG-RDVELTTNTILEALDLHGVSLSKDRRVD-LSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEVSVHE---KSRYARRVFEGIRRDIDEEARRFRAQSDGSTLS 1125
V ALDDV+ +I +VGP GK+T L+ +AGLETP+ G V + G IV H+ V E +A L ++ G RD + +LE +DL G DR D LSGG+ R A+A ALA P P VLLLD+ + D R+R + + +QRE+ + V+ D A + + ++ DG++ +V E + +R V E I D R DGS LS
Sbjct: 28 VTALDDVSLSIRDGEFFTLVGPSGCGKTTLLRSIAGLETPSEGQVIIDGREVTAEPPESRNIGIVFQNYALFPHMSVAENIAYGLRFHDLSGDRDPDERVAELLELVDLAGFG---DREPDQLSGGQQQRVALARALA-----PEPDVLLLDEPLSALDARLRKQLRVQIKTIQRELDITTVYVTHDQAEALAISDRIAVMQDGQLQQVDTPEAVYRDPASRAVAEFIG---DNNVFSGRVTDDGSQLS 265
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: UPI00104CC8D8 (ABC transporter ATP-binding protein n=1 Tax=Halorussus amylolyticus TaxID=1126242 RepID=UPI00104CC8D8) HSP 1 Score: 92.4 bits (228), Expect = 2.830e-16 Identity = 68/227 (29.96%), Postives = 107/227 (47.14%), Query Frame = 1
Query: 349 IKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD----IVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRR-VDLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEV 1014
I+ +GL K FD+ + A+D V+ I + +VGP GKST ++ +AGLETPT GDV + G + +D +V H+ + +V E + E D+ ++ DR+ +LSGGE R A+ AL R P V LLD+ + D ++R + L +L +E+G V+ D M LG++V +DG+I +V
Sbjct: 4 IELDGLVKEFDS---------LTAIDGVSLTIEDGEFLVLVGPSGCGKSTLMRTIAGLETPTEGDVVLDGTAVTDWEPKDRNVAMVFQNYALYPHMTARRNMTFGMNSVGSFTDEEIDRRVEETADILDIADLLDRKPAELSGGEKQRVAMGRALLRD-----PDVFLLDEPLSNLDAKLRDQMRAELQQLHKEIGTTTVYVTHDQTEAMTLGQRVAVMNDGEIQQV 216
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: U1NK26_9EURY (ABC-type sugar transport system, ATPase component n=2 Tax=Archaea TaxID=2157 RepID=U1NK26_9EURY) HSP 1 Score: 91.7 bits (226), Expect = 6.690e-16 Identity = 67/230 (29.13%), Postives = 108/230 (46.96%), Query Frame = 1
Query: 349 IKANGLSKTFDTHHIFFED--EHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD-----IVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRRV-DLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEV 1014
+ + +S + D F+D E + A+D+V +I+ + +VGP GKST L+ +AGLETPT G V + G + R+ + VRE +A P ++ E + E ++ G+ DRR +LSGG+ R A+ A+ R P + L D+ + D ++R + L KL +G V+ D A M L +VV +DGKI ++
Sbjct: 18 VDGDNVSLSLDQIVKVFDDDGEEIVAVDEVDLDIYDGEFIVLVGPSGCGKSTTLRTIAGLETPTEGQVIIDGEDVSGQEPRERDVAMVFQNYALYPHKTVRENIA--FPLEIRNFSAEDINTRVEETTEMLGIKELLDRRPSELSGGQQQRVALGRAIIRD-----PELFLFDEPLSNLDAKLRIQMRTELNKLHDRVGKTSVYVTHDQAEAMTLSDRVVVMNDGKIQQI 240
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A318JV13_9NOCA (Carbohydrate ABC transporter ATP-binding protein (CUT1 family) n=2 Tax=Nocardia TaxID=1817 RepID=A0A318JV13_9NOCA) HSP 1 Score: 90.5 bits (223), Expect = 8.260e-16 Identity = 82/248 (33.06%), Postives = 115/248 (46.37%), Query Frame = 1
Query: 412 VKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYV--GRDIVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTIL-----EALDLHGVSLSKDRRVDLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKITEVSVHEKSRYARRVFEGIRRDIDEEARRFRAQSDGSTLSSLL 1134
V ALD ++ IH A++GP GK+T L+ +AGLETPT G + + G R + GR V+ + V ++ +K R + T E L LHG L + R +LSGG+ R A+A A+A C P V L D+ + D R+R L KLQ E+GV VF D A + L ++ DG+I ++ AR VF RR D F A GST +L+
Sbjct: 17 VTALDALSFTIHDGEFFALLGPSGCGKTTLLRTIAGLETPTGGQIRI-GDRDVTRLAPGRRDVAMVFQDYALFPHMSVVDNIAYPLKVRGADRRTRAAKATETGEQLSLHG--LMQRRPAELSGGQQQRVALARAMA--CH---PKVFLFDEPLSNLDARLRLEARTFLKKLQHELGVTTVFVTHDQAEALALADRIAVMSDGRIRQLGT------AREVF---RRPADT----FVANFIGSTPMNLI 243
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Match: A0A8J3ZXX2_9ACTN (ABC transporter n=1 Tax=Virgisporangium ochraceum TaxID=65505 RepID=A0A8J3ZXX2_9ACTN) HSP 1 Score: 88.6 bits (218), Expect = 9.260e-16 Identity = 72/226 (31.86%), Postives = 109/226 (48.23%), Query Frame = 1
Query: 346 VIKANGLSKTFDTHHIFFEDEHVKALDDVTANIHGPGSVAVVGPWNSGKSTFLKCLAGLETPTHGDVTVSGLRKAVYVGRD----IVSTTGKAIRHLVREEVASSLPGNVKGRDVELTTNTILEALDLHGVSLSKDRRV-DLSGGEVYRFAIAMALARGCGSPTPPVLLLDDMFNKSDQRVRFGVEFNLFKLQREMGVMLVFTADDYAVVMELGRQVVEFDDGKIT 1008
+I+ +GL K +D H V+AL D+T + V VVGP GK+T L+CLAGL TP+ G+VTV+G + V D + G+++ +R LP KG + + EAL G++ + LSGG R AIA ALA P VLL+D+ F D + R +E + + ++ G+ ++F D + LG++VV T
Sbjct: 1 MIEISGLRKAYDGH-----GRRVEALADITFGVDEGQFVCVVGPSGCGKTTLLRCLAGLLTPSGGEVTVAG--RPVQGPPDGLAIVFQEYGRSLFPWLRVGANVELPLRAKGIAARQRRDLVAEALAAVGLADAHTAYPWQLSGGMQQRVAIARALAF-----QPTVLLMDEPFAAVDAQTRAELEDLVRDVWKKFGITMLFVTHDIDESVYLGQRVVVLSSSPTT 214 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig185.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig185.23.1 >prot_P-littoralis_Contig185.23.1 ID=prot_P-littoralis_Contig185.23.1|Name=mRNA_P-littoralis_Contig185.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=335bp MGPSSTPAVGPLLSLLAVCCAALLFREARAYSGTVPIFPDVAAGKKQEAAback to top mRNA from alignment at P-littoralis_Contig185:141579..150706- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig185.23.1 ID=mRNA_P-littoralis_Contig185.23.1|Name=mRNA_P-littoralis_Contig185.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9128bp|location=Sequence derived from alignment at P-littoralis_Contig185:141579..150706- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig185:141579..150706- >mRNA_P-littoralis_Contig185.23.1 ID=mRNA_P-littoralis_Contig185.23.1|Name=mRNA_P-littoralis_Contig185.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1005bp|location=Sequence derived from alignment at P-littoralis_Contig185:141579..150706- (Pylaiella littoralis U1_48)back to top |