mRNA_P-littoralis_Contig185.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig185.6.1
Unique NamemRNA_P-littoralis_Contig185.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig185.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig185contigP-littoralis_Contig185:75241..78935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size349
Hectar predicted targeting categorysignal peptide
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789886.3582373-CDS-P-littoralis_Contig185:75242..754161680789886.3582373-CDS-P-littoralis_Contig185:75242..75416Pylaiella littoralis U1_48CDSP-littoralis_Contig185 75243..75416 -
1680789886.3713026-CDS-P-littoralis_Contig185:78764..789351680789886.3713026-CDS-P-littoralis_Contig185:78764..78935Pylaiella littoralis U1_48CDSP-littoralis_Contig185 78765..78935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig185.6.1prot_P-littoralis_Contig185.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig185 75243..78935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig185.6.1

>prot_P-littoralis_Contig185.6.1 ID=prot_P-littoralis_Contig185.6.1|Name=mRNA_P-littoralis_Contig185.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
THVSRQLCHICLPVSFTSAGTSVAVVFQPFKGHRREATTWERPDTIQPRV
SPTAPHSVVLRFPMSSPAGSDADVQGVTRAEFELQVQAGENERSHLSAEV
ADLHNSLEAKLATVL
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mRNA from alignment at P-littoralis_Contig185:75241..78935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig185.6.1 ID=mRNA_P-littoralis_Contig185.6.1|Name=mRNA_P-littoralis_Contig185.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3695bp|location=Sequence derived from alignment at P-littoralis_Contig185:75241..78935- (Pylaiella littoralis U1_48)
ACACACGTGAGCAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTTTAC
TTCTGCGGGAACTAGTGTTGCTGTCGTTTTTCAGCCGTTCAAGGGCCATC
GGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGCCGCGAGTC
AGCCCTACTGCGCCACACTCGGTACGAGCGACGCATTTAACATTGTTAGG
ACTGAAAGGAAAATCGCCTGTTGTGTGGTTGTGCGCGGATACGCGCTTCG
AATGCGGATAGGCACGGAGTATGTATGGCTAGGGTTAGGGCTGAGCCTAA
GGAGGCATATGCACATTTACCACCTGGTGGGCACACAGTAGAGCACCACG
TTACACGCGCTGCCGGTGTAGCGTAGGCGCACGATGCGCTACTGCGCAAT
ACGTGCGTACGTCAACACAAGTTATCATCTCGTTACACATTTGACATGAG
ACCTGCCAGGAGGTAACGATACACAGCAGTGGATGTTCGCACATCGTATA
AATGTAGACAGCCGTCGCACGCCGGTCATCTAAAAACCGGGCGAACACAT
ACCAGAGATCACTGACACACGCACTGTGGCACAGCGTAGGGACGCTGCAC
GCGTTCTGACACTAACGGGCGCGCGTTGCCATGGATCTATTATATCGTCT
CACATTTGTCAAGAGACATGTCATACGGTACCACGATGCGATCATATGAG
TTATTTGAGACTGTCGCACGTCACAGAGCGAGTTGCCTTCATACCAACGC
AGGTCGCCATTCGATAGACGCACACCCGTAATGATAGACGCACACCCGTA
ATGAGGCTGCCGGCGCAGCACAGGTGCAGATAGCCATAACGTAGTCCACT
ATCGCGCATTTCGCACTTGGTACGTACGAGGTACCGGATGCAGGTACCGT
AATGAGGTCACCGGGACATGATCGAACGAAACAAAAACAAAATGCGGGTC
ACCCAAATCCAACTTAGATCCGTGGTACAGAGACCGCCGCCCACACAATG
GCGGAGAACCGAAGTTGTAGGCGTCATTCGACGCAGGGCCAACTATACTG
TTACCATGAGCCACCACTGCTGTCCGATTGTTGCGCGATCCACGATATCA
TGTCGTGAGATCGCACACACAACGGTCAGAGAGGGCACACAGCAGCAGTA
GTAGTCACATATATCGTTGCACATATACACGACGACTCGACAGTCAACGT
CGTGAGGTCAACTACATTAACAATATACCAAAGTATATAATACTTCGACT
AGAGGGTGTGAACCGGAGTTGCAGGCGTCATACGACGCAGGGCAAACTAT
GCTGCTACCATGCGCCACCACTGCTGTCCGATTGTTGCGCGATCCACAAC
TTCCATGTAGTGAGTTCGCGCACACAACGGTCAGGGAGGGCACGCAGTAG
CAGTAGTAGTCGCTTATATAGTCGCACATATACACGACGATTTGTCAGTC
AATGCCGTGAGGTCAACTACATTTATTAACAATATACCGAAATATATGAT
ACTCCAACTAGTGGGTGTAGTCGACGTAGTTGACCACACAGGAGAGAAAA
ATTCAGCAGTCTAAATCGGAAAATAATACAAAGAGACGAGAGAAACAAAC
CCGGAGGTTTCGAGTACAACACATGTATTATAGGGTGTAGTCGACGTAGT
CGACCACACAGGGTAAATTCAGCAAAGCTGAAATCAAGATATACCAAAGT
ATATGATACTCCGACTCGAGGGTGTAGCCGACGTAGTCGACCACACGGGA
GAGGGGAAAAACAAAATTCAGCGGGTCTGAACCGAAAGATAATACAAAGA
GACGAGAGAAACAAACCCGGGGGTTTCGAGTACAACGCATGTATTATAGG
ATGTAGTCGACGCAGTCGACTATAGGGTGTAGTCGACGTAGTCGACCACA
CAGGGTAAATTCAGCAAAGCTGAAATAAAATATATACCAAAGTATATGAT
ACTCCGACTCGAGGGTGCAGCCGACGTAGTCGACCACACGGGAGAGGGGA
AAAACAAAAATTCAGCGGGTCTGAACCGAAAGATAATACAAAGAGACGAG
AGAAACAAACCCGGGGGTTTCGAGTACAACGCATGTATTATAGGGTGTAG
TCGACGCAGTCGACCACACAGGGGAAATTCAGCAAGGCTGAAACGGAAGA
TAATACAAAAGGAAAAACGAACCCGGCGGTTCTCGCATACAACGCATGTA
TTATCCCGCCCGCATCACACACTGGTGATATCAGGCGATGGCACTTCCAA
CGTAGTGTCAATAAGGGCGAGTTCCTCGCAGGTGCGAGAAGCAGGTTTTG
CCCACATCCTCGCGTCCCGTAGTTTTGCCACGGTAACCGCGAGAGTAACA
TAACGCGTGCGATATACAGCGAAGCTCGAACAAATCCGCGTGTCTTCGCA
TTACGGAAAACCCCGCGTCGTTGTCGCGGTGCACTCCGCACAATTACGAT
TACGATGTCAAGAGGCCGGCGCCTCGACCGAAGTAGTGCCACCAATGTCG
TTTTGTTTTTTTTTTCGCAAGGGTGGAAAATAGGCATGGCCCATAAAATT
CGCGTAGCACCATCTGCTGTCGCTGTCATACGTACCCATGATCATTGGCC
GGCGCCGAAACCTCAATAGTACCAGCAGGGCCGCGTTTCTCACAAGTGTG
GAAAATAGGTTCGGCACATAGTTCTGCGTACCACGAGAACGAAGACAAAA
ATACATATGGCATCGAAATTAGGGTCTGTTAAAAGCAGGAACAGCACCGT
TTACTCGAAGTTCCCACCGGCGTGGCGATAGAGTAGACAGGACAACCGAT
TCGGCATGGAGTAACCGGCCCCGCGGCGCGGAGACACGCGCACGGGATAA
GTAAGTTGTCAGTTGCAGCTATGGACCCACTCTTATCTCACGATTGCGAA
CCCACCTTTCTGGTTTTAATTTGGCGATGAATTTGTATTTTCCCAAGAGG
TTTTTTTTCTTTTCGGAGCCAACATTACTGTCAGAGAGAAGAGTCGCGAC
CATGAGCTTTGAACACTACAGCAGGCACGTATACACGGAATCGTACCGCG
CACACCTATCGCACATATGTCACGCCGTAGGCACTGCTGGGGCAGATACG
GTGCGATAACAAGGCCGCACCCAGCCTGTATACAGCAGTTGCACGAAAAC
CGCACGTTAGTACGTACGAAGTGCCCAGGGTGATCCGGGGTAGGTAGCGG
GGCATGCGCACTTATCCACAAATTCCATGTGAAATATACCGGCGCATGCT
GATCGGGCTACGGGGGTAAATAAAAGCACCGGCGGGGCGTGAGTGATCGA
TATCACTCACGAAGAAATATAGTGACGGGGTGTGGGTGCAACATATGCCA
CCCACGGTTAAAGGCGTCGAACGTGCCGGAGCACGAGGTTGTCACGCGTT
AACCAGGCCCGCTGCTATGTTCCACCTCCAATCATTTGCTGACCCGGCCC
CTCCGCGGTACCCTGCCACCCCCCCCCCCCCCCTGGGCACGATCATCGGA
TTCATCGAATATATTCCAGGTGGTACTTCGGTTTCCTATGTCCTCGCCAG
CCGGCTCCGATGCCGACGTCCAAGGGGTGACGAGGGCCGAGTTCGAGCTG
CAGGTGCAAGCCGGAGAGAACGAGCGCTCTCACCTGTCGGCGGAGGTGGC
AGACCTCCACAACTCGCTCGAGGCCAAGCTGGCCACGGTCCTTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig185:75241..78935-

>mRNA_P-littoralis_Contig185.6.1 ID=mRNA_P-littoralis_Contig185.6.1|Name=mRNA_P-littoralis_Contig185.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig185:75241..78935- (Pylaiella littoralis U1_48)
ACACACGTGAGCAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTTTAC
TTCTGCGGGAACTAGTGTTGCTGTCGTTTTTCAGCCGTTCAAGGGCCATC
GGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGCCGCGAGTC
AGCCCTACTGCGCCACACTCGGTGGTACTTCGGTTTCCTATGTCCTCGCC
AGCCGGCTCCGATGCCGACGTCCAAGGGGTGACGAGGGCCGAGTTCGAGC
TGCAGGTGCAAGCCGGAGAGAACGAGCGCTCTCACCTGTCGGCGGAGGTG
GCAGACCTCCACAACTCGCTCGAGGCCAAGCTGGCCACGGTCCTT
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