mRNA_P-littoralis_Contig184.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.55.1
Unique NamemRNA_P-littoralis_Contig184.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig184.55.1 vs. uniprot
Match: A0A6H5JAN9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.870e-5
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 2 
Query:   11 WVFMEDWCLPKIKAEKFLLSQQFDTFEFKEGEDPRIGFAAFAQLEATMRAC-GCEKSEEDTVHVLLRQLPDSYDMEKRGQLAIPNLTRSFLESVVRSSY 304
            W    ++CLP    EK  L       + K GE+PR  F  F ++ +T+RA  G E ++ + + +L R L   YD  K   +    LTRS LE++VRS +
Sbjct:  512 WEAAHEFCLPMSDPEKQALKLSLTNMKMKLGEEPRDYFLRFHKVLSTIRAVNGDEVTDREVLAMLRRNLLADYDQLKPLLMHNRALTRSSLETLVRSHH 610
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAN9_9PHAE2.870e-534.34Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:155120..155540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.8492343-UTR-P-littoralis_Contig184:155119..1551381680789884.8492343-UTR-P-littoralis_Contig184:155119..155138Pylaiella littoralis U1_48UTRP-littoralis_Contig184 155120..155138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.8581917-CDS-P-littoralis_Contig184:155138..1555401680789884.8581917-CDS-P-littoralis_Contig184:155138..155540Pylaiella littoralis U1_48CDSP-littoralis_Contig184 155139..155540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.55.1prot_P-littoralis_Contig184.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 155139..155540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.55.1

>prot_P-littoralis_Contig184.55.1 ID=prot_P-littoralis_Contig184.55.1|Name=mRNA_P-littoralis_Contig184.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MEDWCLPKIKAEKFLLSQQFDTFEFKEGEDPRIGFAAFAQLEATMRACGC
EKSEEDTVHVLLRQLPDSYDMEKRGQLAIPNLTRSFLESVVRSSYATRKA
NALAKQRLAAAAPAVTSNPHALAVGRAFGGGGHG
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mRNA from alignment at P-littoralis_Contig184:155120..155540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.55.1 ID=mRNA_P-littoralis_Contig184.55.1|Name=mRNA_P-littoralis_Contig184.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=421bp|location=Sequence derived from alignment at P-littoralis_Contig184:155120..155540+ (Pylaiella littoralis U1_48)
GAGGGATGTGTGGGTTTTCATGGAGGACTGGTGTCTCCCTAAGATCAAGG
CGGAGAAATTTCTGCTGTCTCAGCAGTTCGACACCTTCGAATTCAAGGAG
GGCGAGGACCCCCGGATTGGTTTTGCGGCTTTTGCTCAACTCGAAGCCAC
CATGCGTGCTTGTGGCTGCGAGAAGAGCGAAGAGGACACCGTTCACGTTC
TCCTCCGGCAGCTCCCCGATAGTTACGACATGGAAAAACGAGGCCAGCTA
GCCATTCCGAATCTCACTCGCTCTTTCCTGGAGTCAGTCGTGCGATCCTC
GTATGCGACCCGCAAGGCGAACGCACTTGCCAAGCAACGACTGGCGGCTG
CGGCGCCGGCGGTCACTTCGAATCCGCATGCTCTCGCTGTGGGACGTGCT
TTTGGGGGCGGGGGACACGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:155120..155540+

>mRNA_P-littoralis_Contig184.55.1 ID=mRNA_P-littoralis_Contig184.55.1|Name=mRNA_P-littoralis_Contig184.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig184:155120..155540+ (Pylaiella littoralis U1_48)
ATGGAGGACTGGTGTCTCCCTAAGATCAAGGCGGAGAAATTTCTGCTGTC
TCAGCAGTTCGACACCTTCGAATTCAAGGAGGGCGAGGACCCCCGGATTG
GTTTTGCGGCTTTTGCTCAACTCGAAGCCACCATGCGTGCTTGTGGCTGC
GAGAAGAGCGAAGAGGACACCGTTCACGTTCTCCTCCGGCAGCTCCCCGA
TAGTTACGACATGGAAAAACGAGGCCAGCTAGCCATTCCGAATCTCACTC
GCTCTTTCCTGGAGTCAGTCGTGCGATCCTCGTATGCGACCCGCAAGGCG
AACGCACTTGCCAAGCAACGACTGGCGGCTGCGGCGCCGGCGGTCACTTC
GAATCCGCATGCTCTCGCTGTGGGACGTGCTTTTGGGGGCGGGGGACACG
GA
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