mRNA_P-littoralis_Contig184.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.24.1
Unique NamemRNA_P-littoralis_Contig184.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.950e-20
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 2 
Query:   20 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 346
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   53 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 160
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BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.050e-20
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 2 
Query:   20 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 346
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   57 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 164
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BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.950e-20
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2 
Query:   20 SMTARPAGAASPDADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 346
            SMTAR  GAA P+ +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  +AIGAGC H+ PLVTWK+D A+A TCG HQA+++    +Q
Sbjct:   10 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNADLQ 117
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BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.040e-16
Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:   23 MTARPAGAASPDADDSEFFGDPE---GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIA 331
            MTARP GAA    +D+  F DP    GEELE LL  +P      P +A + +HA   P TIR  I   AA+LA  +GC H  PLVTWK+D+ AA+TCG  QA +++
Sbjct:    1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS 105
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BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Match: A0A6H5KMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMD0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.300e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 2 
Query:  113 LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 346
            +G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:    1 MGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC65_9PHAE1.950e-2048.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE2.050e-2048.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE9.950e-2046.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE3.040e-1647.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMD0_9PHAE2.300e-1446.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:61192..61537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size347
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.410965-CDS-P-littoralis_Contig184:61191..615151680789884.410965-CDS-P-littoralis_Contig184:61191..61515Pylaiella littoralis U1_48CDSP-littoralis_Contig184 61192..61515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789884.422762-UTR-P-littoralis_Contig184:61515..615371680789884.422762-UTR-P-littoralis_Contig184:61515..61537Pylaiella littoralis U1_48UTRP-littoralis_Contig184 61516..61537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.24.1prot_P-littoralis_Contig184.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 61192..61515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.24.1

>prot_P-littoralis_Contig184.24.1 ID=prot_P-littoralis_Contig184.24.1|Name=mRNA_P-littoralis_Contig184.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MTARPAGAASPDADDSEFFGDPEGEELEELLGQTPNIAELPPAVAELEEH
ACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQAN
IIAGIRMQ
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mRNA from alignment at P-littoralis_Contig184:61192..61537-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.24.1 ID=mRNA_P-littoralis_Contig184.24.1|Name=mRNA_P-littoralis_Contig184.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig184:61192..61537- (Pylaiella littoralis U1_48)
CGCTGTCGCGGCAGGGCCTTCGATGACTGCCAGGCCCGCTGGGGCCGCCA
GTCCTGATGCTGATGACTCCGAGTTCTTCGGCGACCCCGAAGGGGAGGAG
CTCGAGGAGTTGCTGGGGCAGACGCCAAACATCGCGGAGCTGCCTCCTGC
CGTGGCGGAGCTTGAAGAGCATGCCTGTAGCGACCCGGCCACGATCCGGG
CTAAGATCGCGACACTGGCAGCGAAGCTGGCGATTGGGGCGGGATGCAAC
CACGCTACACCTCTTGTAACATGGAAGGAGGATAAGGCCGCTGCGAGTAC
TTGTGGGCTTCACCAGGCTAACATCATAGCCGGGATACGCATGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:61192..61537-

>mRNA_P-littoralis_Contig184.24.1 ID=mRNA_P-littoralis_Contig184.24.1|Name=mRNA_P-littoralis_Contig184.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig184:61192..61537- (Pylaiella littoralis U1_48)
ATGACTGCCAGGCCCGCTGGGGCCGCCAGTCCTGATGCTGATGACTCCGA
GTTCTTCGGCGACCCCGAAGGGGAGGAGCTCGAGGAGTTGCTGGGGCAGA
CGCCAAACATCGCGGAGCTGCCTCCTGCCGTGGCGGAGCTTGAAGAGCAT
GCCTGTAGCGACCCGGCCACGATCCGGGCTAAGATCGCGACACTGGCAGC
GAAGCTGGCGATTGGGGCGGGATGCAACCACGCTACACCTCTTGTAACAT
GGAAGGAGGATAAGGCCGCTGCGAGTACTTGTGGGCTTCACCAGGCTAAC
ATCATAGCCGGGATACGCATGCAG
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