mRNA_P-littoralis_Contig184.114.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.114.2
Unique NamemRNA_P-littoralis_Contig184.114.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.114.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:386164..391036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1328
Hectar predicted targeting categoryother localisation
Exons6
Cds size1326
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.114.2prot_P-littoralis_Contig184.114.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 386165..391036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789883.8216963-CDS-P-littoralis_Contig184:386164..3862051680789883.8216963-CDS-P-littoralis_Contig184:386164..386205Pylaiella littoralis U1_48CDSP-littoralis_Contig184 386165..386205 -
1680789883.8336747-CDS-P-littoralis_Contig184:386250..3864631680789883.8336747-CDS-P-littoralis_Contig184:386250..386463Pylaiella littoralis U1_48CDSP-littoralis_Contig184 386251..386463 -
1680789883.8490212-CDS-P-littoralis_Contig184:387378..3876451680789883.8490212-CDS-P-littoralis_Contig184:387378..387645Pylaiella littoralis U1_48CDSP-littoralis_Contig184 387379..387645 -
1680789883.8629668-CDS-P-littoralis_Contig184:388269..3886371680789883.8629668-CDS-P-littoralis_Contig184:388269..388637Pylaiella littoralis U1_48CDSP-littoralis_Contig184 388270..388637 -
1680789883.8750727-CDS-P-littoralis_Contig184:389183..3893621680789883.8750727-CDS-P-littoralis_Contig184:389183..389362Pylaiella littoralis U1_48CDSP-littoralis_Contig184 389184..389362 -
1680789883.8881197-CDS-P-littoralis_Contig184:390778..3910361680789883.8881197-CDS-P-littoralis_Contig184:390778..391036Pylaiella littoralis U1_48CDSP-littoralis_Contig184 390779..391036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.114.2

>prot_P-littoralis_Contig184.114.2 ID=prot_P-littoralis_Contig184.114.2|Name=mRNA_P-littoralis_Contig184.114.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=442bp
ILEETRGEKHRKKHLLACRLLADMMRRRQAKATFKAMMRWSCAAVLMRAA
SELRSTVLLFPVRRKNKPSLKAAFHALLCRGVEDNEGNQNNEPRALATKF
ASDTERGHVFAAANQTDPGDANDCTVVPPPAQKLEAQRTGGMCSHGLSQH
PHDHGDTEGHRRDDAVAEKDPKIQIRLDIDRVLRELPPNVTESFTSTSPA
TDVPKVPPPRVTAQQWGDLQEWHKNQRQQWGRRWRRRRQRLPQLSSMREE
GRRSEAGDYPAAVKMVVHGIKTVTNEWRNEQITDVLAKILDLQARSTASG
AGKIATVDPRGPPKIARAAEEAGGAASGNTAVTEAGTTGGGDAGGEDVSD
KRNREVQGILDAFVSLEDSQRRKFVRWFAKLRLQLDEAVVASGRVSDGGE
CTQQDGCRETYGSRTSEFWDPVKVRGSEKKEEEEDETEDEDE
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mRNA from alignment at P-littoralis_Contig184:386164..391036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.114.2 ID=mRNA_P-littoralis_Contig184.114.2|Name=mRNA_P-littoralis_Contig184.114.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4873bp|location=Sequence derived from alignment at P-littoralis_Contig184:386164..391036- (Pylaiella littoralis U1_48)
ATCTTAGAGGAGACGCGAGGAGAGAAACACCGAAAGAAGCACTTGCTGGC
GTGCCGCCTGTTGGCAGACATGATGCGCCGGCGACAGGCTAAGGCAACCT
TCAAAGCGATGATGAGGTGGTCTTGCGCTGCCGTGCTCATGAGGGCGGCG
TCGGAGCTACGCTCGACGGTCTTGCTTTTCCCTGTTCGCAGGAAAAACAA
GCCATCTTTGAAGGCAGCTTTCCATGCGCTACTCTGCCGTGGAGTGGAGG
ACAATGAGGCGAGTAGTACTAATACTACCGTTATGTTCTTGATTTGTTTT
TTTATGATTCAGCAACTCGGGGAGAAGGATCAAGTGCAGAGGGAGAGGGC
TGTTTTGTTTGCTTTAGTCACCGCGGGAATAAACTTTCGCTATGTCCCGT
CTTGTTACGTTTTTTGACCTGGCGAAAATGTACGACTCGAGACAACGATA
ACAATACTCCACAACACGAGACCCCACCCCGAACATCGACGGCAGCATGT
ACGATTCCGTGCCAGCAATCAATCGTAACAAATTCGAAGTACCGAATGGG
ATCGGCGGTTTCAGCCCCAAGAGCGGAGTGCTGTTGATACGGTATGATGT
CAAGATCGCGATTCATAAGGGGGGGGAGCAAAACTCCTGAAGGGAAATGT
CAAGCGGGGGGGGGGGTCGTTTCTTTGTCTTAAAGTCGATGCTCTGATGG
AGGAAATCAAACTTTATGCAACACCTAGGCCAACTTGGGCTTGTTTGGGG
GTGAATATTCGGGAGGAGGGAAATTCAAGCGGCTTCAGATCTGTCTCGGG
TGATAACTTCGTTGGAACACGTTCCTGACTCTCTCTACAACAAACCAACG
GCAAGCCTAACTACCAAGCCTAACTACCACCAACGAATATCACATGACGA
CGCATTTTCCTGTAGTTCAGCACATGCAACGTGGCTCACCGCCGATAAGG
GCTTGATTTACCCAGAAAAAATCGTCTCCATGACTTTTGCGCTTGCTCTC
TTAGCTCCCTGCAGATAAGACACGAATCACAAACCAGTGCAGGTCTGCTT
GATGGGTTGCCGGCACAATTGGGTGATCCTTTCGCTTCGGCTTTCCTTCA
TCTTTTGGAGATAGACGCATTCTAGAGGAGTTCAAGTACACCTCCAGACG
ACGGCATTCATCCGTGCCCTTGATGCCGTCCACCCGGATCGACCTTGGAT
GACACCAACCTCCATCCAAGGAACTTCCATCGTCGAGATTTGTTATTTCG
CCTCAAGGCGTTTTGATCAATCAGGAAACTGCGTGCCACTTTTCGTCACA
CCATGGACGCCCGGGACACCCCACTCTAGCGTCTCTGTCGGTAGTCGTGG
TGTGTCGCCGGTAGGATAAAGTACTTTCACGGCAATCGTGAAGCGAGCAA
GATGGTTGTATCGTGGCCACTGTACATGGTATTGGATTTGAAGATTCGAT
ACGAATATTCTCCGCATTCTGCGGAGGGACAATGTAGTCCACAGTCACAT
TTGTGAGCAGTGAACGCAGCTTGGGGATTAAAGGATAGACGGATCCCCGA
CACCATTATCGATCACAAACGAACACTGCTGTGCGGCGTCGTTCGAGAAA
GCAGCATATGGGTCTAAATAATTCCCGACGGTGGTGTTGCTCTCATCTGT
GTTCTCCCATTTGCTCGTCGTCAGGGCAACCAAAACAACGAACCGCGCGC
ACTGGCCACCAAGTTCGCTTCTGACACCGAGCGCGGGCACGTCTTTGCCG
CGGCAAACCAAACCGACCCTGGGGACGCCAACGACTGCACGGTCGTACCG
CCACCGGCCCAGAAGTTAGAGGCCCAGCGCACGGGAGGGATGTGCAGCCA
CGGGTGAGACGGGATTCCGAAAGTAAGAGGCCCAACAAGCTCAGCACATG
TCTACTGCTTAATTCGGGGCTTTTTGTTTGAGGGGGCGTATATCATAGGT
CACCTGACTCGCGGCTCACCAAACCCACTTTCCGCGCAGCTGCCGAGAAC
ACCACTCGGGGGTCCGCGCAACTCGAGCTCCACCTCACCATAGACTGCAA
GAACCGAATACTGCATCGCGAACGTGCTTATAATGTCGGTTGTTGGGTGG
GAACGCGTGTGCGCATGCTGTTGCGATAGGGCAGCTAGGTTTGTCGGTCT
TCACAACGAAGAGTGCATGTGACGACCTTGCTCACTGTTTTTTTTCCGTT
ACCGCAAATTTGGTTCATGCGGATCACGTGGTATGCAGATACCTACCGCT
TGAGAAGAGCTCATCTGCCTGAAGTGCTGCCTGCGCTTAGCGGTTTTATT
CAAGCACGTTCATAACATGCGCTATGATAGGTGAAGAGCACATAAATTAT
CGCCCTGATTATGCTCAGCTGGATGCTCCCCTCCGGAATTTCACTGCAGG
TTGTCGCAGCATCCTCACGACCACGGCGACACGGAAGGCCACCGTAGGGA
CGACGCGGTTGCTGAAAAAGACCCGAAAATTCAGATTCGGCTCGACATTG
ACAGGGTCTTGCGGGAGCTACCCCCGAACGTCACCGAATCGTTCACCTCG
ACCTCCCCGGCTACCGACGTGCCGAAGGTACCGCCCCCAAGGGTGACGGC
ACAGCAGTGGGGTGACCTCCAGGAGTGGCATAAAAACCAGCGACAGCAGT
GGGGACGGCGCTGGCGACGGCGGCGGCAGCGACTGCCGCAGTTGAGCAGC
ATGAGGGAGGAAGGTCGCCGTTCGGAAGCCGGAGACTACCCTGCAGCTGT
CAAAATGGTGGTCCACGGTGAGACAACCCACAATCTGTGTGTGTATGTAT
TTTTTTTTCACGTGCAGTGCACGATGCACAGGAGACGTCTAACATATGGT
CGCCAACGTGCAAAAAAGGAAAATCTGCGATGTTTGTCGCCGGTTTAATT
TTGTGGTAGGCTCGAGTGACACCGAGGCAACCAACGTGTGAGCCCGAACG
TCCCCCTAAGAACGTCACGAGACGCATACCCTCTGGTGGCATGCTTACCC
CATCCAGTGACCAAATCTGCTTTGCGAACCACGAGGGATTCTTCCACAGC
ATTCCAGCAAATACTCACGTGATTCTGAACAGATATGTCCATACTGCATC
CAGGCTACTACCAATATCATCGACACTGTAGCTTTGAATCTTGGTTTTCG
GTATTTTGGCGTTGAACCAGCTCGCCGACTATCGCCGTATCGGAATCAAC
AAGACAGAGAGAATCCTTAGCCGACTCCGATGTTGTATTGGCAGCAGTGG
CAAGCACAAGTGGGACCCTAAGGCTCCCCGCCAACCGTTCCGTGTCATCG
ATCGCTCCCCCTGGCTTCTTCCTACTTTCGCACGCCTCCTCGTGATCGCC
ATGTGATCACTCGTGTGTGTGACTTGATGGCTTTTTGACAGGCATCAAGA
CGGTAACAAATGAGTGGCGCAACGAGCAGATCACGGATGTGCTCGCAAAG
ATCCTCGATCTTCAAGCACGCAGCACCGCGTCGGGCGCCGGAAAGATCGC
AACGGTGGACCCTCGGGGCCCTCCGAAAATCGCACGGGCGGCGGAAGAAG
CAGGCGGAGCAGCAAGCGGAAACACGGCGGTGACCGAAGCTGGGACGACC
GGTGGGGGAGACGCCGGCGGTGAGGACGTGTCGGACAAGAGGAATCGCGA
GGTCCAAGGTGAGGGTGTTCTCGGGCTTGGTGGTCGTCACTCGTGATTTT
TATCGCTCGAGCACCTGCCGTACCAAGAAGGTGCTTGAAGATTCTCCCGT
ATGTAACCTTCGGGAACCTGGCCGACGGCTAAATACCTTTACACAAGCCT
TCATGTACGCCCACCCCCCCGTTGTCCTGAAGTACCGGCACATCCAGTCA
CATACTACGATTGATGAATTTCGAGCTGCGTACCACATTCCCCTTTGATG
TCTCCTCGGGGGTGTGATTTTTTCTTGTTGCTGTGGAACTGCAACACGCG
ACCGGAAAGTAAAACATGGAAATACGGAGAGATTTGTTTTTGCATCCCAA
CAATCTGCTTGAATTCCCCCGCGGGGAGGAGATTCAGACGAATTACTTCG
AGTTTATATTTTGTAACTGCACCAGTGAAGAGAAAATTATGAAAGGAGGG
GCGGGGGTGCACGTATGTACTACGACGTATACGTATTTTGTTTCCATCCC
TACAAAAGTATATACACTGAATGCGTCCATCAGCTCCGGTGAAATGTGAT
GCTTACATAGTCGCGAAAATCAGTTCGACAAAAGCAAAAACGGGGGGATC
TCACATTAAAATACAAATCCCGGGGGGAACTAACGGAACGGGACGTGGGA
TTTTTTCTTTTCGAAAACAAGATTTTTACTTGGGGAAAAATTAAGGTCTT
TGACAGCTTTCAATTGAACTTCGGGGGGGGGTGGTCAAAGCAGGTTACGG
AACTCTAGGCTCGCGCTTGGGGAGGGTTGGGCATACGCCGTAGGCAAAGA
ACGCCCTGTCAAAGCCTTGCTTTGCCTTGTTGGCAATGACTGGTCATGAC
CAGATTCACACTACCGTGTCCCCACTTCGCAATCGTCCCCACGACGCTAC
CATGCTAACGTATTCCGACGCAGGCATCTTGGACGCATTTGTTTCCCTCG
AAGACAGCCAGCGGAGGAAGTTTGTGCGCTGGTTCGCTAAGCTCAGGCTG
CAACTGGACGAGGCGGTGGTGGCATCAGGTAGGGTGTCCGACGGCGGCGA
GTGCACCCAGCAGGATGGCTGCCGAGAAACGTACGGGAGCAGGACCTCGG
AATTCTGGGACCCTGTCAAGGTGAGGGGTTCAGAAAGCGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGTGGAGGAGGAAGAGAAGGAGGAGGAAGAAGA
TGAAACCGAGGACGAGGACGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:386164..391036-

>mRNA_P-littoralis_Contig184.114.2 ID=mRNA_P-littoralis_Contig184.114.2|Name=mRNA_P-littoralis_Contig184.114.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1326bp|location=Sequence derived from alignment at P-littoralis_Contig184:386164..391036- (Pylaiella littoralis U1_48)
ATCTTAGAGGAGACGCGAGGAGAGAAACACCGAAAGAAGCACTTGCTGGC
GTGCCGCCTGTTGGCAGACATGATGCGCCGGCGACAGGCTAAGGCAACCT
TCAAAGCGATGATGAGGTGGTCTTGCGCTGCCGTGCTCATGAGGGCGGCG
TCGGAGCTACGCTCGACGGTCTTGCTTTTCCCTGTTCGCAGGAAAAACAA
GCCATCTTTGAAGGCAGCTTTCCATGCGCTACTCTGCCGTGGAGTGGAGG
ACAATGAGGGCAACCAAAACAACGAACCGCGCGCACTGGCCACCAAGTTC
GCTTCTGACACCGAGCGCGGGCACGTCTTTGCCGCGGCAAACCAAACCGA
CCCTGGGGACGCCAACGACTGCACGGTCGTACCGCCACCGGCCCAGAAGT
TAGAGGCCCAGCGCACGGGAGGGATGTGCAGCCACGGGTTGTCGCAGCAT
CCTCACGACCACGGCGACACGGAAGGCCACCGTAGGGACGACGCGGTTGC
TGAAAAAGACCCGAAAATTCAGATTCGGCTCGACATTGACAGGGTCTTGC
GGGAGCTACCCCCGAACGTCACCGAATCGTTCACCTCGACCTCCCCGGCT
ACCGACGTGCCGAAGGTACCGCCCCCAAGGGTGACGGCACAGCAGTGGGG
TGACCTCCAGGAGTGGCATAAAAACCAGCGACAGCAGTGGGGACGGCGCT
GGCGACGGCGGCGGCAGCGACTGCCGCAGTTGAGCAGCATGAGGGAGGAA
GGTCGCCGTTCGGAAGCCGGAGACTACCCTGCAGCTGTCAAAATGGTGGT
CCACGGCATCAAGACGGTAACAAATGAGTGGCGCAACGAGCAGATCACGG
ATGTGCTCGCAAAGATCCTCGATCTTCAAGCACGCAGCACCGCGTCGGGC
GCCGGAAAGATCGCAACGGTGGACCCTCGGGGCCCTCCGAAAATCGCACG
GGCGGCGGAAGAAGCAGGCGGAGCAGCAAGCGGAAACACGGCGGTGACCG
AAGCTGGGACGACCGGTGGGGGAGACGCCGGCGGTGAGGACGTGTCGGAC
AAGAGGAATCGCGAGGTCCAAGGCATCTTGGACGCATTTGTTTCCCTCGA
AGACAGCCAGCGGAGGAAGTTTGTGCGCTGGTTCGCTAAGCTCAGGCTGC
AACTGGACGAGGCGGTGGTGGCATCAGGTAGGGTGTCCGACGGCGGCGAG
TGCACCCAGCAGGATGGCTGCCGAGAAACGTACGGGAGCAGGACCTCGGA
ATTCTGGGACCCTGTCAAGGTGAGGGGTTCAGAAAAGAAGGAGGAGGAAG
AAGATGAAACCGAGGACGAGGACGAG
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