mRNA_P-littoralis_Contig184.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig184.110.1
Unique NamemRNA_P-littoralis_Contig184.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig184.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig184contigP-littoralis_Contig184:373883..374540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size641
Hectar predicted targeting categoryother localisation
Exons2
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789883.7747622-CDS-P-littoralis_Contig184:373882..3742621680789883.7747622-CDS-P-littoralis_Contig184:373882..374262Pylaiella littoralis U1_48CDSP-littoralis_Contig184 373883..374262 -
1680789883.7909534-CDS-P-littoralis_Contig184:374281..3745401680789883.7909534-CDS-P-littoralis_Contig184:374281..374540Pylaiella littoralis U1_48CDSP-littoralis_Contig184 374282..374540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig184.110.1prot_P-littoralis_Contig184.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig184 373883..374540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig184.110.1

>prot_P-littoralis_Contig184.110.1 ID=prot_P-littoralis_Contig184.110.1|Name=mRNA_P-littoralis_Contig184.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
GSRGTKREKKKGAMIQLQPTLRIHFFLKLGDNDPLCMYLIPGGKGAAEGG
NFEVVVCGFSTLCSLRVRKIDPISIQNLPMSVLLRVAYSKSKTKLDFDFD
SVLGPICCSFVQNQKRIKLKNRRHRQVVCDMSMPCPDSKTSAGAVVPQTT
STTVPHVALTPALGSSLFGIDNRKTRQEMSKYVLLCPFLEVAAVSATQTA
VEQQTSCTLLHI*
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mRNA from alignment at P-littoralis_Contig184:373883..374540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig184.110.1 ID=mRNA_P-littoralis_Contig184.110.1|Name=mRNA_P-littoralis_Contig184.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=658bp|location=Sequence derived from alignment at P-littoralis_Contig184:373883..374540- (Pylaiella littoralis U1_48)
GGAAGCAGGGGAACGAAAAGGGAAAAGAAAAAAGGTGCGATGATACAACT
CCAGCCAACGCTTCGCATACACTTTTTTCTGAAGTTGGGCGATAACGACC
CATTGTGTATGTATCTCATACCGGGCGGTAAGGGCGCGGCAGAGGGCGGA
AACTTTGAGGTTGTTGTGTGTGGTTTCTCCACACTATGTTCTCTCCGCGT
GAGGAAGATTGATCCGATCTCAATTCAAAACCTTCCGATGTCTGTCCTGC
TGAGGGTGGCTCTTGTCAAGTTTTTGACCGTATTCAAAATCAAAAACAAA
ATTGGATTTTGATTTTGATTCCGTGTTGGGTCCGATCTGCTGCAGCTTTG
TCCAAAATCAAAAGCGGATAAAATTAAAAAACAGGCGTCACAGACAGGTG
GTGTGTGATATGAGCATGCCGTGTCCCGATTCCAAGACAAGTGCGGGAGC
TGTCGTGCCTCAAACGACGAGCACGACGGTGCCCCACGTCGCCCTGACTC
CGGCGCTTGGTAGTTCTTTGTTTGGGATCGATAACCGAAAAACTCGGCAA
GAGATGAGTAAGTACGTGTTGCTCTGCCCTTTTTTGGAGGTAGCTGCTGT
ATCAGCTACGCAAACAGCAGTTGAGCAACAAACTTCCTGCACACTTCTAC
ACATTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig184:373883..374540-

>mRNA_P-littoralis_Contig184.110.1 ID=mRNA_P-littoralis_Contig184.110.1|Name=mRNA_P-littoralis_Contig184.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig184:373883..374540- (Pylaiella littoralis U1_48)
GGAAGCAGGGGAACGAAAAGGGAAAAGAAAAAAGGTGCGATGATACAACT
CCAGCCAACGCTTCGCATACACTTTTTTCTGAAGTTGGGCGATAACGACC
CATTGTGTATGTATCTCATACCGGGCGGTAAGGGCGCGGCAGAGGGCGGA
AACTTTGAGGTTGTTGTGTGTGGTTTCTCCACACTATGTTCTCTCCGCGT
GAGGAAGATTGATCCGATCTCAATTCAAAACCTTCCGATGTCTGTCCTGC
TGAGGGTGGCGTATTCAAAATCAAAAACAAAATTGGATTTTGATTTTGAT
TCCGTGTTGGGTCCGATCTGCTGCAGCTTTGTCCAAAATCAAAAGCGGAT
AAAATTAAAAAACAGGCGTCACAGACAGGTGGTGTGTGATATGAGCATGC
CGTGTCCCGATTCCAAGACAAGTGCGGGAGCTGTCGTGCCTCAAACGACG
AGCACGACGGTGCCCCACGTCGCCCTGACTCCGGCGCTTGGTAGTTCTTT
GTTTGGGATCGATAACCGAAAAACTCGGCAAGAGATGAGTAAGTACGTGT
TGCTCTGCCCTTTTTTGGAGGTAGCTGCTGTATCAGCTACGCAAACAGCA
GTTGAGCAACAAACTTCCTGCACACTTCTACACATTTGA
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