mRNA_P-littoralis_Contig183.51.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.51.2
Unique NamemRNA_P-littoralis_Contig183.51.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.51.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:254920..258289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1336
Hectar predicted targeting categoryother localisation
Exons3
Cds size1332
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.3043125-CDS-P-littoralis_Contig183:254919..2550211680789881.3043125-CDS-P-littoralis_Contig183:254919..255021Pylaiella littoralis U1_48CDSP-littoralis_Contig183 254920..255021 +
1680789881.3183677-CDS-P-littoralis_Contig183:255528..2556251680789881.3183677-CDS-P-littoralis_Contig183:255528..255625Pylaiella littoralis U1_48CDSP-littoralis_Contig183 255529..255625 +
1680789881.3310065-CDS-P-littoralis_Contig183:257154..2582871680789881.3310065-CDS-P-littoralis_Contig183:257154..258287Pylaiella littoralis U1_48CDSP-littoralis_Contig183 257155..258287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.51.2prot_P-littoralis_Contig183.51.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 254920..258287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.51.2

>prot_P-littoralis_Contig183.51.2 ID=prot_P-littoralis_Contig183.51.2|Name=mRNA_P-littoralis_Contig183.51.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=444bp
RAQEEEGGWDAKRYYRLAGDDGDYEGGSDEGEDQMAGPSGDESDDGGFDA
RAPPAAGGGKRLPKAEVSMAAFSNEEDYWDRLERLEAEAEGKTPPKSKLK
PKPKPKPTPSVSTSFLSRKTPGTSLSSTSSSSSSSMKHRGKKLPRSAAVS
GDSSAGGDNDGGGGCGASSGLDKKRQSLSQQQQQRQRVGVRSVREPMIPP
SSRRRKNNNPNSSNNTTEKKQLSITLAATTGQAATVMMQGGKGENNKSSS
SSSSSSNQKLLLQKVGSAATATTTSTFPTTIRAEKSTAEAAAARSVQQGR
GSAAAGGAASTAAAARQTSPVPPTRGRGGSGSRGRGRRGGGAVADLLASM
LNPSGSSGSGSGNGSGNGNGDRLSNGDGGGEGCSGTRTRRSSGDGGGSSG
KGGTTVNRPPIKRALADATTGSSSCSGYRSSSSSVRKKAKAGGG
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mRNA from alignment at P-littoralis_Contig183:254920..258289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.51.2 ID=mRNA_P-littoralis_Contig183.51.2|Name=mRNA_P-littoralis_Contig183.51.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3370bp|location=Sequence derived from alignment at P-littoralis_Contig183:254920..258289+ (Pylaiella littoralis U1_48)
CGGGCGCAGGAAGAAGAGGGCGGGTGGGACGCCAAGAGGTACTACCGACT
AGCCGGAGATGACGGTGACTACGAGGGCGGCAGCGACGAAGGAGAAGACC
AGGTGAGAGACAGGATAGCCACTTCTCGTGGACGCCAATTTTTCGCAAAC
CATCGCATAGCGCGTTTTAATGCGAACATTGGAACGAGTTTTTTGGGGAG
TCTAGCATATGGGTTTTATGTTTTCCCCTGCTGCTGCTGCTACCATCGTC
GAGAGTTTTGCATCCTGGAGGTATTCTCAGCCGTGATATATATATCACAT
TAATGGTTTTGGACTGAAGGTTTTCTTTGCTCTATTGTCCTTGGGATGAT
TAGTGCTTTCTGACTGACTGACTGACTGACTGGCTGACTGATCGGCTGAT
TGAGCGGACTCTGCTCGTCGTTGGGCAATAAATAAGATGAGAATACCAGG
TGTAGTGTAGGCATTATCCGGATGTTATCTGACGTTCAGCCTACTTACAG
TGCATGATTGACCCCCCCCCGCCCTCCTACCCCCCCCCCCCTTAACTTGT
CTGTCTGTCTGTCTGTCTGCCTGCCTGCCTTGTCCGGTCGTCTGTCGTGT
CGACAACAGATGGCCGGGCCTAGCGGCGATGAGTCAGATGACGGTGGGTT
CGACGCCCGGGCACCACCTGCGGCGGGCGGGGGCAAGAGGCTCCCAAAGG
CAGAAGGCAAGCAGTCGATTCGTTTGCGTGCGTGTGCTTATCGTCCCCAT
CTATTCTGGACACCACTAGTCCAAATATCTTTGGGTACGCGTTAAGGGGG
GTGTATCAGCCCGGGGGTCGCACAGGATGAACGGTAACACAGGATGAATG
GTAACGCAGGAATTTTTCTATTGTCATCGCCACTTGCCTTCTGCTGGCGC
TTACCTGAACTGTTATCGCGTGAGAAGGGTTCGGTCGTCCCTTCCCTTCG
TCGTTAGCTGGGTTTGAGCTGTTTGTGCACCTGCATACCCCCACGAAATA
ATCGCCAACCCTCTGCTGTCTGTTTGCAATAATTTCGAACACCCTCATGA
TATCATATGATACTACAAATCGACCTTATTTCGCGGAGCATCCAAATCAG
CCTTTTCTCACAGAGCTCGTCATCCGCGACCATAGTAGGCGTATCATTTG
ACATGTGTTTTCGCACATGCCATTTAATTCCAGCACAGCAGTGTCGGCGA
GGGGAAGGGACGGCTGTACCCTTTCTCGCGATAAAAAATTAAGGCAAGTA
CCGCGGTGGCAAAAGTGGAGAGGAAACAATAAAAAAATAAACTCCTGTGT
TGACTTCCTACTTTGTGACCCCGGTTGGAGCGTCTGCCTACCCGAAAGGT
GCAGAGTGGCGTCCAATTACAGGTATGACAACACACAACACACACACAGC
AGCAGCATCGACTTAGCTCTGTGTGTGTAAGCGTTCACGCGTGTGTGTGT
GTGCGTGTGTGTGTGTGTTTCTTTTTAGTTTGGTGGCGACTCGCCCACGA
AAACACCGTCGATGATAACATTACGTGTCTAACTGCTGCTGTGCACTCTA
CCAGGCGCGGACCAAACACATCCATATGATGCACACAAGTCATGCAAAGA
TGAGGGTCGGCGACATCATCCCAACCCCGTCCGCGACCAATCAACCGAGT
ATATACGAAGTATTTTTTATTTTTTCAAGAGGTGGTGTGACGTTAAGACC
CTAGATGATGCATCGCCCCTCCCCGTCCGCTCCAACCCCAGGAATTTCGT
GTGATACTGTAAACCAATCAAAATGTGACGCCCCGAATAATGGACCTTAC
CGTAAAACTCCGGGTGAAAATCTCTCAGCATGAATATATCTCAAACAAAT
TAAGAGTCACGAAAAGTGTGTTGCGGCGCCGGGGGATCTAGGCGATAAAG
TCCCCGAACATCTGTTACCATGAACAGGCGCACGTGCTGTGTGGTACAAG
TCAGCGTCGCCCCCCAACAGCCTTTTCCAATAATTAAATAAAAAAAAACT
GATGTTTCACAAGTCGTGTGGGCAACTTTTACATTTTGACAGTGAAACTC
CTGACTGAGATTCACGAAGAACCAGCAAAGACCGCAGGCACCTCTACAGC
AGCAGCAATTGCAGTAGTGCCTCTGAGCGTTCGTCTCACATACCGCCCGC
CCTGCCCCAAACGACGCCGTCGCCACGCAACGCAACGCAACGCCACTCAA
CGCCACGCAACGCACAATCAAATGGAACGAACCAGTTTCGATGGCAGCCT
TCAGCAATGAAGAGGACTACTGGGACCGACTGGAGCGGCTCGAGGCCGAA
GCGGAAGGGAAAACGCCTCCGAAATCAAAACTGAAACCGAAACCGAAACC
GAAACCGACACCGTCAGTATCCACGTCATTTCTGTCAAGAAAAACTCCCG
GAACCTCGTTGTCATCGACGTCGTCGTCGTCGTCGTCGTCGATGAAGCAT
CGCGGCAAGAAGTTGCCTCGGTCTGCCGCCGTTAGCGGTGACAGCTCCGC
CGGTGGTGATAATGACGGTGGTGGTGGTTGTGGTGCTAGTAGCGGCCTTG
ACAAAAAACGCCAAAGTTTATCGCAGCAGCAGCAGCAACGGCAACGGGTC
GGTGTCCGGAGCGTCCGGGAGCCCATGATACCGCCCTCCAGCAGGCGTCG
CAAGAACAACAATCCCAACAGCTCCAACAACACCACGGAGAAAAAGCAGC
TGTCGATAACGCTAGCCGCAACAACCGGCCAAGCTGCGACGGTGATGATG
CAGGGCGGCAAGGGAGAGAACAACAAGAGCAGCAGCAGCAGCAGCAGCAG
CAGCAATCAGAAACTGCTCCTGCAGAAGGTCGGTTCTGCTGCTACTGCTA
CAACCACTAGTACTTTTCCAACCACTATTCGTGCGGAGAAGTCGACGGCA
GAGGCTGCCGCCGCGCGCAGTGTTCAGCAGGGGAGAGGCAGCGCAGCAGC
TGGAGGAGCGGCATCAACGGCAGCAGCAGCACGCCAAACTTCTCCAGTGC
CGCCCACACGCGGAAGAGGGGGGAGTGGGAGCCGGGGTAGGGGTAGGAGA
GGTGGCGGGGCTGTTGCTGACTTGTTGGCGTCAATGCTCAATCCGAGCGG
CAGCAGCGGCAGCGGCAGCGGCAACGGCAGCGGCAACGGCAACGGTGACC
GGCTCAGCAACGGCGATGGTGGTGGAGAAGGGTGCAGCGGAACAAGAACA
AGGCGCAGCAGCGGCGACGGCGGCGGTAGCAGTGGCAAGGGAGGAACGAC
AGTAAACCGTCCGCCAATCAAACGCGCACTGGCAGACGCCACCACCGGTA
GCAGCAGCTGCAGCGGCTACCGCAGTAGTAGCAGTAGCGTTAGAAAAAAA
GCTAAGGCAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:254920..258289+

>mRNA_P-littoralis_Contig183.51.2 ID=mRNA_P-littoralis_Contig183.51.2|Name=mRNA_P-littoralis_Contig183.51.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1332bp|location=Sequence derived from alignment at P-littoralis_Contig183:254920..258289+ (Pylaiella littoralis U1_48)
CGGGCGCAGGAAGAAGAGGGCGGGTGGGACGCCAAGAGGTACTACCGACT
AGCCGGAGATGACGGTGACTACGAGGGCGGCAGCGACGAAGGAGAAGACC
AGATGGCCGGGCCTAGCGGCGATGAGTCAGATGACGGTGGGTTCGACGCC
CGGGCACCACCTGCGGCGGGCGGGGGCAAGAGGCTCCCAAAGGCAGAAGT
TTCGATGGCAGCCTTCAGCAATGAAGAGGACTACTGGGACCGACTGGAGC
GGCTCGAGGCCGAAGCGGAAGGGAAAACGCCTCCGAAATCAAAACTGAAA
CCGAAACCGAAACCGAAACCGACACCGTCAGTATCCACGTCATTTCTGTC
AAGAAAAACTCCCGGAACCTCGTTGTCATCGACGTCGTCGTCGTCGTCGT
CGTCGATGAAGCATCGCGGCAAGAAGTTGCCTCGGTCTGCCGCCGTTAGC
GGTGACAGCTCCGCCGGTGGTGATAATGACGGTGGTGGTGGTTGTGGTGC
TAGTAGCGGCCTTGACAAAAAACGCCAAAGTTTATCGCAGCAGCAGCAGC
AACGGCAACGGGTCGGTGTCCGGAGCGTCCGGGAGCCCATGATACCGCCC
TCCAGCAGGCGTCGCAAGAACAACAATCCCAACAGCTCCAACAACACCAC
GGAGAAAAAGCAGCTGTCGATAACGCTAGCCGCAACAACCGGCCAAGCTG
CGACGGTGATGATGCAGGGCGGCAAGGGAGAGAACAACAAGAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATCAGAAACTGCTCCTGCAGAAGGTCGGTTC
TGCTGCTACTGCTACAACCACTAGTACTTTTCCAACCACTATTCGTGCGG
AGAAGTCGACGGCAGAGGCTGCCGCCGCGCGCAGTGTTCAGCAGGGGAGA
GGCAGCGCAGCAGCTGGAGGAGCGGCATCAACGGCAGCAGCAGCACGCCA
AACTTCTCCAGTGCCGCCCACACGCGGAAGAGGGGGGAGTGGGAGCCGGG
GTAGGGGTAGGAGAGGTGGCGGGGCTGTTGCTGACTTGTTGGCGTCAATG
CTCAATCCGAGCGGCAGCAGCGGCAGCGGCAGCGGCAACGGCAGCGGCAA
CGGCAACGGTGACCGGCTCAGCAACGGCGATGGTGGTGGAGAAGGGTGCA
GCGGAACAAGAACAAGGCGCAGCAGCGGCGACGGCGGCGGTAGCAGTGGC
AAGGGAGGAACGACAGTAAACCGTCCGCCAATCAAACGCGCACTGGCAGA
CGCCACCACCGGTAGCAGCAGCTGCAGCGGCTACCGCAGTAGTAGCAGTA
GCGTTAGAAAAAAAGCTAAGGCAGGAGGAGGA
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