mRNA_P-littoralis_Contig182.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.92.1
Unique NamemRNA_P-littoralis_Contig182.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig182.92.1 vs. uniprot
Match: D7FQP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP0_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 1.530e-128
Identity = 208/355 (58.59%), Postives = 249/355 (70.14%), Query Frame = 2 
Query:  128 GIDLDKTPVLAGVIDKITDLVGVPPDCVHMTTREGE*IHASHSDKMKFDLRSTVHLGADVLLDGQVDPASSTGDFILSGGDLSQPLRLQMRSGNAYIATDSVLHAPFLHGIRHPGQSSISVVSTWSPGGGVFNLFRSKSHPLAASFSFLCGVKAVDGQQAFEVTTVDLVPPKKVKARIQQPGDFADGVSLFRAHPQEQASAYHRL--------------GKMISPNG----------GAVQSGKQTKPNDKPRGPGAAGKKVFDYTPYRRSIGHHHRGYKSER-GALVKSENTSEFFEYRISKVNKGAWTLSTRSFNTHNNNTPC-YPCGVDGTRIETKANVKRDNRYLMKLARE 1114
            G+DL   PV+AG I  +TDLVGV  DC H+TTRE E +H SHSD+MKFD+R TVHLGADVLL GQVDPA STGDFILSGGDL QPL + MRSG+AYIAT  VL+AP  HGI  P Q+S+SVV TWSPG G FN +RS+SHPLA SF  LCGVKAVDG++AF+VTT D VPPK +K+RI+Q GDF DGVSLFRA P+EQASAYHRL              G+  S +G          GAVQSGKQ KPN    GPGAAG+  FDY PY  S+G H R  K+++ G ++ SEN SEFFE+ +  VN G  TL T+ F+++ +N    YPC  DG RI+    ++R N YLM+ ARE
Sbjct:  106 GVDLALAPVVAGAIATMTDLVGVRSDCAHLTTREKEQLHTSHSDRMKFDVRGTVHLGADVLLHGQVDPARSTGDFILSGGDLPQPLIMPMRSGDAYIATSEVLYAPLFHGISPPDQASLSVVCTWSPGRGAFNPWRSQSHPLAESFPSLCGVKAVDGEEAFKVTTTDRVPPKTIKSRIRQSGDFTDGVSLFRAPPEEQASAYHRLANSCNVAGCSCTESGEACSCDGHVHVKNASVGGAVQSGKQQKPNSHRGGPGAAGRIEFDYGPYATSLGKHLRAQKNKKTGDIIISENPSEFFEWSVPSVNNGERTLGTQPFDSNGDNKRASYPCTKDGARIKKAPKLERGNAYLMQKARE 460
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BLAST of mRNA_P-littoralis_Contig182.92.1 vs. uniprot
Match: A0A6H5KC74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC74_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 4.310e-92
Identity = 154/221 (69.68%), Postives = 176/221 (79.64%), Query Frame = 2 
Query:  128 GIDLDKTPVLAGVIDKITDLVGVPPDCVHMTTREGE*IHASHSDKMKFDLRSTVHLGADVLLDGQVDPASSTGDFILSGGDLSQPLRLQMRSGNAYIATDSVLHAPFLHGIRHPGQSSISVVSTWSPGGGVFNLFRSKSHPLAASFSFLCGVKAVDGQQAFEVTTVDLVPPKKVKARIQQPGDFADGVSLFRAHPQEQASAYHRLGKMI-----SPNGGAV 775
            GI L+K PVLA +IDK+TDLVGVPPD VHMTTREG  IH SHSDKM+FD+RSTVHLG DVLLDGQVDPA STGDF+LSG DLSQ L LQMRSG+ YIATD+VLHAP+L GIR PGQ+S+S+VS W     VF+ FR K  PLA +FS LCGV AVDG++AF VT+ +LVPP +V  RI+QPGDF DGVSLFR  P+ QASAYH+LGK       SPNGG V
Sbjct:  308 GIGLEKAPVLACLIDKMTDLVGVPPDGVHMTTREGGQIHMSHSDKMQFDVRSTVHLGKDVLLDGQVDPAKSTGDFVLSGRDLSQSLLLQMRSGDPYIATDNVLHAPYLQGIRPPGQASLSLVSAWRR---VFHPFRPKFRPLAETFSLLCGVDAVDGEEAFRVTSSELVPPTRVGERIRQPGDFTDGVSLFRPPPEAQASAYHKLGKRNKGKKGSPNGGMV 525
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BLAST of mRNA_P-littoralis_Contig182.92.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.420e-11
Identity = 37/56 (66.07%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  779 SGKQTKPNDKPRGPGAAGKKVFDYTPYRRSIGHHHRGYKSERGALVKSENTSEFFE 946
            SGKQ+K N   RGPG A  K FD TPY RSIGHH RG+K  +  LVKSE TSEFFE
Sbjct:  162 SGKQSKRNGNSRGPGGASDKEFDNTPYCRSIGHHRRGFKGAKSRLVKSEETSEFFE 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQP0_ECTSI1.530e-12858.59Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KC74_9PHAE4.310e-9269.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU8_9PHAE4.420e-1166.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:350109..351967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1332
Hectar predicted targeting categoryother localisation
Exons2
Cds size864
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789880.769957-UTR-P-littoralis_Contig182:350108..3503701680789880.769957-UTR-P-littoralis_Contig182:350108..350370Pylaiella littoralis U1_48UTRP-littoralis_Contig182 350109..350370 +
1680789880.799795-UTR-P-littoralis_Contig182:351761..3519671680789880.799795-UTR-P-littoralis_Contig182:351761..351967Pylaiella littoralis U1_48UTRP-littoralis_Contig182 351762..351967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789880.7789724-CDS-P-littoralis_Contig182:350370..3508751680789880.7789724-CDS-P-littoralis_Contig182:350370..350875Pylaiella littoralis U1_48CDSP-littoralis_Contig182 350371..350875 +
1680789880.7909002-CDS-P-littoralis_Contig182:351402..3517611680789880.7909002-CDS-P-littoralis_Contig182:351402..351761Pylaiella littoralis U1_48CDSP-littoralis_Contig182 351403..351761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.92.1prot_P-littoralis_Contig182.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 350371..351761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.92.1

>prot_P-littoralis_Contig182.92.1 ID=prot_P-littoralis_Contig182.92.1|Name=mRNA_P-littoralis_Contig182.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=288bp
MKFDLRSTVHLGADVLLDGQVDPASSTGDFILSGGDLSQPLRLQMRSGNA
YIATDSVLHAPFLHGIRHPGQSSISVVSTWSPGGGVFNLFRSKSHPLAAS
FSFLCGVKAVDGQQAFEVTTVDLVPPKKVKARIQQPGDFADGVSLFRAHP
QEQASAYHRLGKMISPNGGAVQSGKQTKPNDKPRGPGAAGKKVFDYTPYR
RSIGHHHRGYKSERGALVKSENTSEFFEYRISKVNKGAWTLSTRSFNTHN
NNTPCYPCGVDGTRIETKANVKRDNRYLMKLAREAQG*
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mRNA from alignment at P-littoralis_Contig182:350109..351967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.92.1 ID=mRNA_P-littoralis_Contig182.92.1|Name=mRNA_P-littoralis_Contig182.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1859bp|location=Sequence derived from alignment at P-littoralis_Contig182:350109..351967+ (Pylaiella littoralis U1_48)
GTCTCACTCTTCTCTCCGGCCCGTGTGGGTCTCTGCTGCGACGCTAATAT
GATACTTGAACCATTCTCACTGGGTAAATAAGCGATAAGAACATGAACAT
CCTCTCCAACGGCAAACCCGTCGACGGGGGATAGATCTGGACAAGACGCC
TGTCCTAGCTGGCGTGATCGACAAGATAACTGACCTGGTTGGCGTGCCGC
CTGACTGCGTGCACATGACAACGCGGGAGGGCGAGTAAATCCACGCGTCA
CATTCGGACAAGATGAAGTTCGATCTGCGCAGCACTGTCCACCTTGGCGC
GGACGTCCTCCTCGACGGGCAAGTAGACCCCGCGAGTTCCACCGGGGACT
TCATCCTCAGCGGCGGCGACCTGTCGCAGCCCCTTCGCCTTCAGATGCGG
AGTGGAAACGCCTACATCGCCACGGACAGCGTGCTCCATGCCCCCTTTCT
CCACGGTATCAGGCACCCGGGCCAATCAAGCATTTCGGTCGTTTCCACGT
GGTCTCCGGGGGGTGGCGTCTTCAATCTCTTCCGGAGCAAGTCCCACCCT
CTGGCCGCGAGCTTCTCCTTCCTCTGTGGGGTGAAGGCCGTCGACGGTCA
GCAAGCCTTTGAGGTCACGACTGTGGACCTTGTTCCGCCGAAGAAGGTCA
AGGCACGGATCCAGCAGCCGGGGGACTTCGCCGACGGCGTTTCGCTATTC
CGAGCACACCCCCAGGAGCAGGCGTCCGCCTACCACCGGCTCGGCAAGAT
GATTAGCCCGAACGGAGGTATTGTTTGGGAGTCGTTTGTTTGGTTGTTCT
TGATTACACTCGAGTAGAGTACCGAAGCGACGGCCAGATACGAACACACA
ATGCTGTCCTTGAAGGAAGTTCGTTGGCGAGGTTGTTCTTGGTGCTATCA
AGGCGCGCAGCAGACCCTTTGAATAAATGTACCTAGAGCGGTTTCATGTG
TCAGATTTTCCATTTGTCTCGTGTGCACCCGGCCTTCCGAATGTGTCATG
AGTGTATCCTCGATAGTCATCATGAGTTGTTGTTGCTGTTGTTGTTGCTG
TTGTTTGTTTTCAGCACAGCGATTGGATGATGCAAAGTATTGACTCGCAG
GTGTTCAGAAATGTTCTTCACTCTTCGGGTTCGCTGCTTTAGCCCTGGTT
ACGTCCACAATGTACCGCTCCATCCGGCGCTATGGTATAGTCAAGTGGTA
ATCGCCTGGGGAATCCCATATCTCGTCTTGCGAAAAAGACGCTCAAACTC
GGCCACTTGCCTCCTCTGAATGATTTTCCTGAACGAATTTTCAGGGGCGG
TACAATCGGGAAAACAAACGAAGCCCAACGACAAGCCGCGAGGCCCCGGT
GCCGCCGGCAAGAAGGTGTTTGACTACACCCCGTACCGTCGCTCCATCGG
CCACCACCACCGTGGTTACAAGAGCGAGAGGGGCGCCCTTGTCAAGTCGG
AGAACACGTCGGAGTTCTTCGAGTACCGCATCTCCAAGGTGAACAAAGGG
GCGTGGACGTTGAGCACACGCTCCTTCAACACCCACAACAACAACACGCC
ATGCTACCCATGCGGTGTGGATGGCACAAGGATCGAGACCAAGGCCAACG
TAAAGAGAGACAACCGTTACCTGATGAAGTTGGCCAGGGAGGCGCAGGGG
TAGGCGGGCGAACAGGCATCTACCATTAATATTAGTTCCGTGCCTTTCGG
CTGTTACTCCCAGGCCACATGCACGGGGTCTTCCGGGATAGATAGCCCAA
AAGCTGTCAAGAATCCTCCTTCCACGTGGATATATCCTTGCGGTAGTGTG
CGGGTGTGTGTTTGTGCAACACGAAACCCCGACCAAGGCAGAGAAGAAGT
GTTTCTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig182:350109..351967+

>mRNA_P-littoralis_Contig182.92.1 ID=mRNA_P-littoralis_Contig182.92.1|Name=mRNA_P-littoralis_Contig182.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=864bp|location=Sequence derived from alignment at P-littoralis_Contig182:350109..351967+ (Pylaiella littoralis U1_48)
ATGAAGTTCGATCTGCGCAGCACTGTCCACCTTGGCGCGGACGTCCTCCT
CGACGGGCAAGTAGACCCCGCGAGTTCCACCGGGGACTTCATCCTCAGCG
GCGGCGACCTGTCGCAGCCCCTTCGCCTTCAGATGCGGAGTGGAAACGCC
TACATCGCCACGGACAGCGTGCTCCATGCCCCCTTTCTCCACGGTATCAG
GCACCCGGGCCAATCAAGCATTTCGGTCGTTTCCACGTGGTCTCCGGGGG
GTGGCGTCTTCAATCTCTTCCGGAGCAAGTCCCACCCTCTGGCCGCGAGC
TTCTCCTTCCTCTGTGGGGTGAAGGCCGTCGACGGTCAGCAAGCCTTTGA
GGTCACGACTGTGGACCTTGTTCCGCCGAAGAAGGTCAAGGCACGGATCC
AGCAGCCGGGGGACTTCGCCGACGGCGTTTCGCTATTCCGAGCACACCCC
CAGGAGCAGGCGTCCGCCTACCACCGGCTCGGCAAGATGATTAGCCCGAA
CGGAGGGGCGGTACAATCGGGAAAACAAACGAAGCCCAACGACAAGCCGC
GAGGCCCCGGTGCCGCCGGCAAGAAGGTGTTTGACTACACCCCGTACCGT
CGCTCCATCGGCCACCACCACCGTGGTTACAAGAGCGAGAGGGGCGCCCT
TGTCAAGTCGGAGAACACGTCGGAGTTCTTCGAGTACCGCATCTCCAAGG
TGAACAAAGGGGCGTGGACGTTGAGCACACGCTCCTTCAACACCCACAAC
AACAACACGCCATGCTACCCATGCGGTGTGGATGGCACAAGGATCGAGAC
CAAGGCCAACGTAAAGAGAGACAACCGTTACCTGATGAAGTTGGCCAGGG
AGGCGCAGGGGTAG
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