mRNA_P-littoralis_Contig182.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.30.1
Unique NamemRNA_P-littoralis_Contig182.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig182.30.1 vs. uniprot
Match: D8LLZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLZ1_ECTSI)

HSP 1 Score: 1084 bits (2803), Expect = 0.000e+0
Identity = 722/1427 (50.60%), Postives = 868/1427 (60.83%), Query Frame = 1 
Query:    1 METPSHNRPVTA---GSISRQRRGHSNDHDYNDDNDCEDVCSAQQQHPTPNRPSTQRSTRSTPRALAEAGKRLSGGTRSDEDAIRTMRSEMETLKTKLRASDLAKSQAQQVQLQRQGAETAKLERYIGQLVDDRGGVDDAVLENMVREIERSSHAKRALKEVAELKSALDRKEKQVTMLRKLQAVEYTLKLAEEKEALAVRVERLLTESTNKHIGSTDNVEESDQNRRGHAPSSSXXXXXPSKTSLAELERLRAQNLDMRKESARLR-------AELNLAKIGGEGGHG---GSRXH-------GRGEKRGNTNGAMFYAGQAVDCRKEGSDSWHPATIDCARMVVEPLGSG-------------DRGSPRKYLYSVSFVNKEGRHEDDVPEHRIRAAGGGDGDDGPGQGSSWVVKNRHGDTIIRSKVFRSGDSVFVLDGGSGLDGGRSSKGDEKWSPGEVIRRNDNGTYRVVVLGGRADGKDFHPTMLRTQGNPGDE--------EEVGSPQTKADVTSPAEEAERRYAEQREELLAIARSALPAPLQVGQDVLAKNRGSTVWGSGIVVGTEDGNLRYSVEFDFGDVEESLPCIFVRPRRGGQLASDTRARVGDAVLVQKHGKHDAGGGDDSDWRTARFERYDEGSVDFCHVVFAGEQSVTRVRATRVRQLYRSASTAGERLHDEEMVPGNPPPP-----TKPVRAKKHQEGDVVLACIPNAKKWTPALITGVKGRGRYSVEWADGVRANSLLFMHIASMKGPARNG--SFADEKAARVASDTNSXXXXXXXXXXSGKPRSPQRLDNNSANHDRNRTLSQERGDGVNATPSTVRLRQRALEVGEPVLAKSSPDHGFWNPGCITRADGGGKYDVRFMDGTMAEDLSFLFVRGLSSQQCD-DDEKAEAAGSHGRVDGSAPEFNHPSGGKRDPVVGDTVYVLKRGHSPDTTSRDMASRDLWRSGTITAAASGRFTVQYHLEEGAPKESRIVPARLRFRNVIRQKAAQKGDAVLALSKTPGRGWMMGAVIARDSFGKYTIAFADGTESHGIRYFVNLRRVVGNAVDDK--DHEREAEKPVRRAIRQRRFKKGELALAKHPESRKWVVVKIVEALPSGRYDLEFLVDGTPNASGVLFHHIRHLNLSNFDPVNSGDGCEDSHESKAAVERAQRASTMESSPDVKQRSAVHDESWD-----DHDDYGGH---------------------------GRGSSD--------RIRM--------ASENKALDVGSDVYVLRRGKSSDADLEDERSWRRGTVVSARSNGTFAVEYDEAGSPKEDRITENRLRFRHDRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------KFEEGDTVFA-AGGRGGEEWTEARVEAYLGDDLYRVRISDGSGTKELESRKL 3960
            ME  S  R V +   GSISR R  +SN+ D ND+ D           P P RPST R+T+STPRA AEA +RLS     DE A+  +R E+E L+ KL  +DLA                                    VLE++V++IE+SS  K A+++VA+LK+ L  KEKQV  LRK QAVEYTLKLAEEKEAL VRVERL+ ES +KH          D   RG   S +       + S A                           AEL L ++ G+ G G   GSR         GR  +  +++GA FY GQAV+CRK+GSDSW PAT+D  R+ +EPLG                RGS R Y+Y V F  +E    +DVPE RIRAA  GDG+ GPG GSS VV++  G+T+IRS+VF +GD V V DGG    GGR+++ ++KW+ GEVIRRNDNGTYRV+V GG+A+GKDFHPTMLR Q  P +         ++ G+ QTK   TSPAEEAE RYAE+REELL +AR  LPAPL VGQ+V+AK+ GSTVW SG+VV T+  NLR  VEFD GDVE++LPCIFVRPRRGG LA    AR GDAVL QK  K D   GD  DW  ARF  YDE   D C+V F GE++ +R++ATRVR LY SA                         TKPVRAKKH+EGD+VLACIP  KKWTPA+ITGVKG GRYSVEWAD VR   LLFMHIASM+GP+R    S   +K++  ++D++           SG         +  ++  R+R LS E   G   TPS VRLRQRAL VGEPVLAK +PD GFW+PG +TRADGGG+YD+RF DGT AEDLSFLFVRGLS++Q   DD   E     GR+     E  HPSG +RDPVVGD+VYVLKRGHS + TS+DM +RDLWR  T+TA ASGR+TVQY+ EEG PKESR+V  RLR RNVIRQKA Q GDAVLALSKTPGRGW+MGAV AR S GKYTI+F DGTES  IR FVNLRRVVG+A  ++  DH    +KP  RAIRQRRFKKGELAL KH E+RKWV+VK++EALPSGRYDL+FL +G+PNA GV F HIRHL+L+ F   + G    +        +R+ R           +   + DE WD     D+  + GH                           G GS+D        R R         +SE + L +GSDVYVLRRGK  DADL+D+ SWR G VV  RSNGTFAVEYDE GSPKEDRI ENRLR R + +   XXXXXXXXXXXXXXXX                   +       KFE GD  FA   G G + WT   V+AYLG  LYRV  +DGSGTKEL+S+KL
Sbjct:    1 MEAASRQRRVESAAGGSISRHRL-YSNNSDDNDNIDGN--------RPAPVRPSTHRATKSTPRAAAEAARRLSVDP-VDERAMGKVRLEVEALRDKLSEADLAXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXTCVLESIVKDIEKSSRMKHAMEQVADLKADLSLKEKQVAALRKSQAVEYTLKLAEEKEALQVRVERLIAESNSKH----------DSGIRGRTTSFNSASSSQKEQSAASXXXXXXXXXXXXXXXXXXXXXXXXXXAELELVEMRGDSGSGREHGSRSQNRDNMDRGRARQHCHSDGARFYEGQAVECRKQGSDSWLPATVDSVRLTIEPLGGXXXXXXXXXXXXXDSRGSHRTYMYGVYFDGEETGRREDVPEFRIRAAASGDGN-GPGLGSSRVVRDCDGETVIRSRVFGAGDLVLVRDGG----GGRTNQDNKKWTLGEVIRRNDNGTYRVLVSGGQAEGKDFHPTMLRAQDGPKNSFDSGCDVHDQPGASQTKTKATSPAEEAEIRYAERREELLELARGDLPAPLHVGQEVIAKSGGSTVWSSGVVVATDSDNLRCRVEFDSGDVEDNLPCIFVRPRRGGDLAPGGDARTGDAVLAQKTRKQDTRSGDRGDWFAARFRSYDEDDADSCYVTFDGERASSRLQATRVRFLYPSARGGXXXXXXXXXXXXXXXXXXXXXXTKPVRAKKHREGDIVLACIPTVKKWTPAVITGVKGHGRYSVEWADFVREKPLLFMHIASMQGPSRKRAISVGHKKSSDDSADSHHATTRAPASGASGGG-------DTGSDERRSRVLSAESSAG-GITPS-VRLRQRALNVGEPVLAKKAPDQGFWSPGSVTRADGGGRYDIRFTDGTTAEDLSFLFVRGLSAEQSSGDDRGGEVDTRSGRITSDTSEM-HPSG-ERDPVVGDSVYVLKRGHSVEITSQDMHNRDLWRVATVTAVASGRYTVQYNGEEGKPKESRVVAERLRVRNVIRQKAVQMGDAVLALSKTPGRGWVMGAVTARGSDGKYTISFTDGTESDQIR-FVNLRRVVGHAEGEEKDDHN---DKPSPRAIRQRRFKKGELALTKHSETRKWVIVKVLEALPSGRYDLQFLEEGSPNALGVPFQHIRHLDLACFAGDSQG-ATGNGXXXXXXXKRSPRDDMAVGERIPTESHTMSDEGWDGNNGHDYHAHSGHRSRGGSEEGYHQEKRVEKPRQQREASAGGGSTDYDERDETPRNRREGDGNRGASSETRPLTIGSDVYVLRRGKRQDADLQDKTSWRSGKVVFVRSNGTFAVEYDEDGSPKEDRIAENRLRRRLNNNDKDXXXXXXXXXXXXXXXXSNNDFGRYQDRVGSDEEYGDDFHRQDNKFEAGDMAFAQTRGWGRKNWTRVTVDAYLGKGLYRVEFADGSGTKELDSKKL 1385
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLZ1_ECTSI0.000e+050.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:127099..136005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUN9
Model size3966
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons10
Evalue2.65e-11
EggNOG OGs2CMGM@1|root,2QQAC@2759|Eukaryota
DescriptionTudor domain
Cds size3966
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.30.1prot_P-littoralis_Contig182.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 127099..136005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.1483452-CDS-P-littoralis_Contig182:127098..1273081680789878.1483452-CDS-P-littoralis_Contig182:127098..127308Pylaiella littoralis U1_48CDSP-littoralis_Contig182 127099..127308 -
1680789878.1582892-CDS-P-littoralis_Contig182:127605..1278091680789878.1582892-CDS-P-littoralis_Contig182:127605..127809Pylaiella littoralis U1_48CDSP-littoralis_Contig182 127606..127809 -
1680789878.1692176-CDS-P-littoralis_Contig182:128172..1282671680789878.1692176-CDS-P-littoralis_Contig182:128172..128267Pylaiella littoralis U1_48CDSP-littoralis_Contig182 128173..128267 -
1680789878.179552-CDS-P-littoralis_Contig182:129091..1293571680789878.179552-CDS-P-littoralis_Contig182:129091..129357Pylaiella littoralis U1_48CDSP-littoralis_Contig182 129092..129357 -
1680789878.1958432-CDS-P-littoralis_Contig182:130067..1302561680789878.1958432-CDS-P-littoralis_Contig182:130067..130256Pylaiella littoralis U1_48CDSP-littoralis_Contig182 130068..130256 -
1680789878.205248-CDS-P-littoralis_Contig182:131060..1311911680789878.205248-CDS-P-littoralis_Contig182:131060..131191Pylaiella littoralis U1_48CDSP-littoralis_Contig182 131061..131191 -
1680789878.2157903-CDS-P-littoralis_Contig182:132052..1322621680789878.2157903-CDS-P-littoralis_Contig182:132052..132262Pylaiella littoralis U1_48CDSP-littoralis_Contig182 132053..132262 -
1680789878.2252378-CDS-P-littoralis_Contig182:132732..1349191680789878.2252378-CDS-P-littoralis_Contig182:132732..134919Pylaiella littoralis U1_48CDSP-littoralis_Contig182 132733..134919 -
1680789878.2395813-CDS-P-littoralis_Contig182:135256..1354121680789878.2395813-CDS-P-littoralis_Contig182:135256..135412Pylaiella littoralis U1_48CDSP-littoralis_Contig182 135257..135412 -
1680789878.253553-CDS-P-littoralis_Contig182:135687..1360051680789878.253553-CDS-P-littoralis_Contig182:135687..136005Pylaiella littoralis U1_48CDSP-littoralis_Contig182 135688..136005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.30.1

>prot_P-littoralis_Contig182.30.1 ID=prot_P-littoralis_Contig182.30.1|Name=mRNA_P-littoralis_Contig182.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1322bp
METPSHNRPVTAGSISRQRRGHSNDHDYNDDNDCEDVCSAQQQHPTPNRP
STQRSTRSTPRALAEAGKRLSGGTRSDEDAIRTMRSEMETLKTKLRASDL
AKSQAQQVQLQRQGAETAKLERYIGQLVDDRGGVDDAVLENMVREIERSS
HAKRALKEVAELKSALDRKEKQVTMLRKLQAVEYTLKLAEEKEALAVRVE
RLLTESTNKHIGSTDNVEESDQNRRGHAPSSSSSSSSPSKTSLAELERLR
AQNLDMRKESARLRAELNLAKIGGEGGHGGSRGHGRGEKRGNTNGAMFYA
GQAVDCRKEGSDSWHPATIDCARMVVEPLGSGDRGSPRKYLYSVSFVNKE
GRHEDDVPEHRIRAAGGGDGDDGPGQGSSWVVKNRHGDTIIRSKVFRSGD
SVFVLDGGSGLDGGRSSKGDEKWSPGEVIRRNDNGTYRVVVLGGRADGKD
FHPTMLRTQGNPGDEEEVGSPQTKADVTSPAEEAERRYAEQREELLAIAR
SALPAPLQVGQDVLAKNRGSTVWGSGIVVGTEDGNLRYSVEFDFGDVEES
LPCIFVRPRRGGQLASDTRARVGDAVLVQKHGKHDAGGGDDSDWRTARFE
RYDEGSVDFCHVVFAGEQSVTRVRATRVRQLYRSASTAGERLHDEEMVPG
NPPPPTKPVRAKKHQEGDVVLACIPNAKKWTPALITGVKGRGRYSVEWAD
GVRANSLLFMHIASMKGPARNGSFADEKAARVASDTNSNSNSNSNSNSSG
KPRSPQRLDNNSANHDRNRTLSQERGDGVNATPSTVRLRQRALEVGEPVL
AKSSPDHGFWNPGCITRADGGGKYDVRFMDGTMAEDLSFLFVRGLSSQQC
DDDEKAEAAGSHGRVDGSAPEFNHPSGGKRDPVVGDTVYVLKRGHSPDTT
SRDMASRDLWRSGTITAAASGRFTVQYHLEEGAPKESRIVPARLRFRNVI
RQKAAQKGDAVLALSKTPGRGWMMGAVIARDSFGKYTIAFADGTESHGIR
YFVNLRRVVGNAVDDKDHEREAEKPVRRAIRQRRFKKGELALAKHPESRK
WVVVKIVEALPSGRYDLEFLVDGTPNASGVLFHHIRHLNLSNFDPVNSGD
GCEDSHESKAAVERAQRASTMESSPDVKQRSAVHDESWDDHDDYGGHGRG
SSDRIRMASENKALDVGSDVYVLRRGKSSDADLEDERSWRRGTVVSARSN
GTFAVEYDEAGSPKEDRITENRLRFRHDRHGGGGGGGGDDDDDDDDVRRP
RGGRRGGGGGGGGGGGGNEKFEEGDTVFAAGGRGGEEWTEARVEAYLGDD
LYRVRISDGSGTKELESRKLR*
back to top

mRNA from alignment at P-littoralis_Contig182:127099..136005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.30.1 ID=mRNA_P-littoralis_Contig182.30.1|Name=mRNA_P-littoralis_Contig182.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8907bp|location=Sequence derived from alignment at P-littoralis_Contig182:127099..136005- (Pylaiella littoralis U1_48)
ATGGAGACGCCGTCCCATAATCGGCCGGTGACTGCAGGCTCCATCTCACG
TCAACGACGTGGGCACTCGAACGACCATGACTACAATGACGACAACGATT
GTGAGGATGTCTGTTCAGCACAACAGCAGCACCCTACACCTAATCGTCCC
TCCACGCAGCGAAGCACCAGATCGACCCCGCGTGCCCTGGCCGAGGCCGG
GAAACGATTATCTGGCGGTACTAGGTCGGACGAAGACGCCATAAGAACGA
TGCGGTCGGAAATGGAAACACTCAAAACAAAGCTCAGAGCGTCCGATTTG
GCGAAGTCTCAAGCGCAGGTGATACGTGAAACTGATGAACTGTCGGTTGT
TGCGCACATGTACAGTAGAATGCCGGCAGTCTAAGGGGTGTGTGAGCCAG
GTCAGCCATTGAAATGTGTCCATGCTGTTTCCGTCAATTGTTGATATTCT
AACACGATGATAAATAAACTACTGCACACACGAGAAGTCTCGAATTAATG
TAACAAAAAAAAAATGGAGTAGTACTTCGGGCCCTCTGCTGTATTTGCTT
TTTCGACCTGTTCGACCTGCTCGCGTGCGATTCGTTCTTCAAGCAGGTTC
AATTGCAGCGACAAGGCGCCGAAACGGCCAAACTAGAGCGATACATAGGC
CAGCTCGTCGACGACCGGGGTGGTGTCGATGATGCCGTCTTGGAAAACAT
GGTTAGAGAAATTGAGAGGAGTTCGCATGCGAAGCGCGCTTTGAAGGAGG
TGGGTAACAGGTATCAAACGTATCGTTGGAAAAATAAGGGAAGTTCGGAG
GTGGGTGAGCAAACGCACCTATTCAGTGCCCGTTGTTTACGTCATGTCCT
GGAGTTAAGTTCCTCTACTTCGATTGCCCCGCATTTCATTTTGCTGAAAT
GCACGCCTTCGCCTCTGTGGCCTCGCTTACTCGGCCTCGGGAGAAGCGTG
AGCTTATCGATCCGAGGTTACACTACTAGAAGTGTAAGGGTACCGTCCTT
TTTACACTACTGAACTGTAAGGTGCTGTTCGACCAACATATTTTCACGAT
CGGTTGACCAGTCAATCGATCATTTGTGACTTTAAGGTGGCGGAGCTCAA
GTCGGCCCTCGATCGCAAGGAGAAACAGGTTACCATGCTCCGCAAATTGC
AAGCCGTTGAGTACACCCTCAAGCTCGCCGAAGAGAAGGAGGCGCTCGCT
GTCAGAGTGGAGAGGCTCCTCACCGAATCCACCAACAAGCACATCGGTTC
CACCGACAACGTAGAAGAAAGCGACCAAAACCGCCGCGGCCATGCACCGT
CATCATCATCATCATCATCATCCCCTAGCAAGACTAGTCTGGCCGAGCTG
GAGAGACTGCGAGCCCAAAACTTGGACATGCGTAAGGAATCAGCGCGTCT
TCGCGCAGAGTTGAACTTAGCCAAGATTGGCGGCGAAGGTGGTCACGGTG
GTAGCAGGGGTCACGGTCGCGGTGAGAAGCGTGGTAACACCAATGGAGCA
ATGTTTTATGCGGGTCAGGCCGTGGACTGCCGAAAGGAAGGTTCGGATTC
GTGGCATCCCGCCACTATCGATTGTGCACGTATGGTGGTCGAGCCCCTAG
GTAGCGGAGACCGAGGGAGTCCCAGGAAGTACCTCTACAGCGTATCGTTC
GTAAATAAGGAAGGCAGACATGAAGACGACGTCCCCGAGCATCGAATTCG
AGCGGCTGGCGGCGGCGACGGTGATGATGGCCCCGGTCAGGGCTCAAGCT
GGGTCGTCAAAAATCGCCACGGTGACACAATCATCCGCTCAAAGGTGTTC
AGATCTGGGGACTCCGTCTTCGTTCTGGACGGCGGCAGCGGCCTTGACGG
CGGTCGGTCTAGCAAGGGCGACGAAAAGTGGAGCCCCGGCGAGGTCATAC
GGAGGAACGACAACGGCACCTACCGCGTGGTGGTGTTGGGAGGGCGAGCC
GATGGGAAAGATTTCCACCCCACGATGCTCCGCACACAGGGCAACCCTGG
AGACGAAGAGGAGGTCGGCTCACCTCAGACGAAAGCGGACGTAACGTCGC
CGGCTGAGGAGGCTGAGAGGCGGTACGCGGAACAGCGGGAGGAGCTGTTA
GCCATCGCGCGCAGTGCTCTGCCCGCCCCCCTCCAGGTCGGGCAGGACGT
CCTGGCTAAAAACCGGGGCTCGACAGTGTGGGGGTCCGGGATCGTGGTGG
GCACCGAAGACGGCAATCTGCGCTATAGTGTCGAGTTTGATTTTGGCGAC
GTCGAGGAAAGTCTCCCCTGCATCTTCGTCCGGCCTCGGAGAGGGGGCCA
ATTGGCGTCGGACACGCGTGCGCGCGTAGGGGACGCCGTTTTGGTCCAGA
AACACGGCAAGCATGATGCGGGGGGCGGCGACGACAGCGACTGGAGGACG
GCGCGGTTCGAGCGCTACGACGAGGGCTCGGTAGACTTCTGCCACGTCGT
TTTTGCCGGGGAACAGTCTGTGACCAGAGTGCGAGCGACGCGGGTGCGGC
AGCTTTATCGCTCCGCCTCGACGGCTGGGGAACGGCTCCACGACGAAGAA
ATGGTCCCCGGTAACCCCCCACCCCCGACAAAGCCCGTGCGCGCCAAGAA
GCACCAAGAGGGGGACGTTGTTCTTGCGTGCATCCCCAACGCTAAGAAGT
GGACGCCGGCCCTGATCACCGGGGTCAAGGGGCGCGGGCGCTACTCCGTC
GAATGGGCGGACGGCGTGAGGGCGAACTCCCTCCTGTTCATGCACATCGC
ATCCATGAAAGGTCCCGCCAGAAATGGCTCGTTTGCCGATGAAAAAGCCG
CTCGGGTGGCCTCTGATACCAACAGCAACAGCAACAGCAACAGCAACAGC
AACAGCAGCGGCAAACCGCGCTCTCCTCAAAGGTTGGACAACAACAGTGC
CAATCACGATCGCAATCGCACTCTTTCACAAGAACGCGGCGACGGCGTGA
ACGCGACCCCAAGCACGGTCCGCTTGCGCCAGCGAGCTCTCGAGGTTGGT
GAACCCGTCCTCGCCAAGAGCTCGCCAGACCACGGCTTCTGGAACCCCGG
CTGCATCACCAGGGCCGATGGAGGGGGGAAGTACGACGTGCGGTTCATGG
ACGGGACGATGGCCGAGGATCTGTCGTTCCTGTTCGTGCGCGGACTGAGC
TCCCAACAATGCGACGACGATGAGAAGGCCGAGGCGGCGGGGTCCCACGG
CAGGGTCGACGGCAGTGCTCCTGAATTCAACCATCCCAGTGGTGGGAAGA
GGGACCCGGTTGTTGGGGACACGGTGAGAGAAAAAGGGGGAGGGGAAGGG
GGGGAGTGGAGGACGGTGGCCATACAACCTTTTGATTGTTTAATACCAAA
GGAGTGTTTTTGCGTCAGTGGAGAAGCTCATGAACGTATTTAGGTTGTTG
TAGCACACGGCGCAATGTTTTCTCCTGCTGATATTAGTTGTTCTTGTGGC
GCATGCCCAGAGAGAGAGAGGGGGGGGGGGGGTAGGGGGTCAGAAAAAAG
GTACCTGAACAGGCGTGTGCATCAGTACTACCCAAGCAGGTTCTGTCGCG
TCACATGATGCTGTGCGACAACCGCACCCTCGAAAAAGGGTACAACACCA
CCACCACCGGAGAATTCGACAAACGTGAACGCCTTTCCCTCTTGGGCTGG
CTTTCTTTCATTCCGGGGTAAGAGTGATACACCAGCAAACCCCTCCTGCC
TTCGCGCCGCGTATGCAACACGCCATCGTTGACGAAAACGAAGGTGTACG
TACTCAAGCGCGGCCATTCCCCGGACACGACCTCGCGAGACATGGCCAGC
AGGGATCTGTGGCGTTCGGGCACGATCACCGCCGCCGCGAGCGGTCGCTT
TACCGTGCAGTACCACCTCGAGGAGGGGGCACCTAAGGAGTCGAGGATAG
TCCCGGCCCGCCTTCGCTTCCGGAACGTCATCCGCCAGAAGGCGGCGCAG
AAGGTTGGTGACTTAACCAACGACCCATTCTGCGGGCCCCCGTCCGTGTT
GCTCGTGGCCTGAAAACACCACTGTTCTCGCGCGCCTTGGCTGGCAGGTC
CAGCACGGCGGTTGCCTCGTTACCCCTGATATTTATTTGGTCTGTGAAAA
GGAGGACGCTGCGTGCTAAAGGGTGCCTTCTTTGTCCTGGCTTGCTGGCT
GCAGTATCCATATGTATGCTCCTGCGTGCTGTCGCCATTTATCCCCTGTG
TCTGTTGCTTTTAAACAGGTCCATATTTTTATTTTTCATGGGTGGGGCGA
GTTGGGGGGGTCGAGTGGGAGACAAATAACCTCCTTGCCGTCGCCGGTCG
GCTTCGAACGTGTAGCTTGTGTGTAAACTGCTGCTGTGTGTATGTTTTAT
ATTCTTTTAGCTTCCAGCGTCCCACACATTTCCGTCACCTGCTTCACGTC
CCCCGCCTTACGTGCTAGTTGTTGCTTTCCAGCCAGCGAAGACCCTACCG
CACATGTGCACGTGCAAGAGATTACTTTTTGAAAGAGCAGTAATGTGCAC
CAGCAACGGACAGCCCACTCGTGTGACGCGCATCCTTCTCGAACGTACGT
AAATATTTCCGACCCGAGTTCACCCCAGAGTGAGAAAGATTTCCCTCCCA
CGAGCCCCCTCCCCCCCCACCCCCCAAACCATCCCTCTTCGCGTGTGATG
ACATATCATACGCAGTAGTTTTTCCTCCACCACCACTCACTGCTACAACC
ACGACTACTACACTACATTTCCCATTTCCAGTTCCAACGTTTCGGCAAAC
ACACACACACACACCCCCGCGCGAACGAACGGACAACCTAAACCTACACA
CCTCACATGGACAGGGTGATGCCGTTTTGGCGCTATCGAAAACTCCCGGT
CGCGGGTGGATGATGGGAGCCGTCATCGCCCGTGACAGCTTCGGGAAGTA
CACCATCGCCTTCGCGGACGGGACCGAGTCGCACGGAATCAGGTAGTTGC
GATGCCATCGGTTAGTTGAGGACCAAATCAGTGACCTATCATACCTATTT
ATCTTTACGAACTGCGAGCCGTGCGCGCAAAGCTTAGGACGAACTTGATT
AGTAACAATAAACATGCCCCAGCGTGATGAATGCGCTTCGGGTTGTGTGT
CCGTGGGAGAGTAGGAGCACGGCGTAGCTCAATAACTTGAAGGGTGAATG
ACGGCCAGGCACTGCAGGAAATATCGGTCGGTACGCCAGGTACATCGCCA
GTGAGGAAACGATCAGGTACTGAAGCAACCACTCTCGGCCGAGCAACTAC
TGCACCAGACTGCCGGCAGAAGTCAGATCTTTCCGGAAATGACAGTAGTG
TATTTTCATCCGAAATGCATTTCGACATTTTTATCTCTATCGGAACAGAT
CCAGATTTTCACTCGAAAAATTCATTTCGACAACTTGTCTCTATCGGAAC
ATAGTCGTACGTAGACACACCGTGCGAAATCAGGTACGAAGAACATGTTT
CCTAGCTCTGCGCACCTACACGTTGTAAAGTTTATTTTCTGTTTGCCAAC
CTCCTCGCAACCCCGTGCCTGCCGCACGTTCTGCACCTCCTCCTCCTCTC
CCCTCCCCTTGCCTCCCCTCCAACATAATGTATAGCAGCATATGATGCGC
CTGCATATGATATACCGTATGTCTTGAGAGCGCATCAATCGTCCACACTT
CGACCCTTTGCTAACCACCCATCCCCCCCCCCAAAATAAATAAATAAATA
CTCCCCCCCCCTTTCATAATACGCACCGCCAAACACTACACTGGAAAAGT
TTTGTCAACCTTCGACGCGTGGTCGGCAACGCCGTCGACGACAAGGACCA
CGAACGCGAGGCGGAAAAGCCCGTCCGGCGCGCCATCCGGCAGCGGAGGT
TCAAGAAGGGCGAGCTCGCCCTGGCGAAGCACCCCGAATCGCGAAAATGG
GTCGTCGTCAAGATTGTGGAGGCTCTTCCCTCGGGCAGGTGACGAAACGA
GAGACAAAAAAAAGGGGATAGGCGGGCTGGAGCGGGGGGGGGGGGGGGGT
TCTTCCCCCCCCTCCACCCTTGCCGAGGTATTTGGTCTCATACAAGGGCA
AGAAGCAAATGAGCGTGTCCCCCGACCCCCCCCTCCCCGACCAGCTTTAT
CTTGTCGCGCCCCCTCTTCTCCTCGATGAGTTTACTTGTCCCCACTGCCG
CTGCGAAGATACGCACCATATTGACTTTTTCTACTACATACGAACTCGTT
GCTTCCTGTTGCTTTTCTGTTAAGCCACCGGAATTCTTCCACCTCCAATG
AAAGCCCTTCGAGGATATGTCACTTTCGTAGGATGAACGGCACGCTAAGC
AAGAGGGGGGTGTTTTTGGCCTGATTTTAGGGACAATCCCGTTTCTATAT
AGATCGTTGTGCACGGGCGGTGGCCTGAAGCAAGTTCACACATGATCAAA
CACTCACCATGCCTTGACGACTGCGCCATACCCAACAGTCCCGAATAACC
AATCGATTCCTTCACACCTATTTTTTACTACTGTTGCTCCCTTCGTCTCA
GAGAGAGGGGAAGATAATCATGGCACATATTTAAAGGATCAAGCCCAGAC
TGGCACATACAAGTGTGCATCAAACAAGCCAATAATCTCGCAGTTTTTTT
CCCTTTTGTCCTTCTTTGCGCGCGTACGAAAAAATAAAAAAACGAAAGGT
ACGATTTGGAGTTCCTGGTTGACGGGACCCCGAACGCCTCTGGGGTATTG
TTCCATCACATCCGGCACCTGAACCTCAGCAATTTTGATCCGGTCAACTC
TGGTGACGGCTGTGAAGACTCTCATGAAAGCAAGGCGGCGGTGGAACGTG
CCCAGCGTGCATCCACGATGGAGAGCAGCCCGGACGTCAAGCAACGCTCG
GCAGTCCACGACGAAAGCTGGGACGATCATGACGACTACGGTGGACACGG
TCGCGGCAGCAGCGGTCACGGCGGCCGCAGCGGCGGTGGTGGTGGCGGTG
GCGGCAGCGACGAAGAAGAGTCTGGTTCTGGGCGGCACGGGCGGCGGCAA
GGACAGAATAGGTCAGAGCCATCCGCGAAAACAGATTTGAGTTGTTCCGT
CCGGGTGCCATGCTCTGGGACATTACACGGTACAGGATTTACAGGCCCTC
AAGAGCGCACGCACACAAACGGTTGTGTTCCACCGTCTCTTCTGTGTAGC
TCGCTGGTTGGTCGAAATGCCCTCAACGAAGAGACAGAGTCAGGCTCGCT
TCGGAACACCATACACGCGCCGTACGCGGTGCCTGGAGCATTTTCCAGGT
CGATCGCAAGCACGCATTGTGCGTTGTGCCTACGCGCGTGTGCGTAAAAG
CTTCTGGGCAATAACAAACACACACAAAATAAACAAGCGACGTTTGGTTC
TTTAGTCAACGCTCGAGAAAAAACCAGATGTATGTATACACTCGCAAGAA
ATAGCAAGATTTTTATGCATTTTCTCTCCTTGATCGGTTCACTGATCAAC
AACAAGCCGGATTGTTTGCACATTATTATTTCTCATTAACAACGACGAGG
GACTTTCATGCATTCTCTCTCATTGGTCTACTCACTTAGCAGCGAGGCGG
TTGTGTGCACTGTATTATATTCTCATTAACGACGAAGGATTTTGGAAGTA
CGTTGTACTTCATAGTTCGTACTTCGCGGTTTCACATCCGCTTCGGTTCC
CTTTCCTCTCCCCCCCCCCCCCCTCCCGCCACGCGCCGACCGCCCCGACC
AACAACGGGGGCACGATACATGGTCAGACGCACCTCAGACCGTATTAGAA
TGGCATCTGAAAACAAGGCTCTCGACGTCGGGTCGGATGTGTACGTGCTC
AGGCGCGGCAAGAGTTCAGATGCTGATCTTGAGGTACGCAACACAACCAC
TCAAACTAGGTTCTCGTCGTTGTGTTCCCGTGTATGCGCAATGATCCTGT
CGATCGGCACATCACAGGAAAATGGTCGACCCCCCCGATAAAGCAGAACA
CGATTTTTTTACAACCGTTCCGCCCTTTTTGCTCTTTTCATTTAACCCCG
AGGTCGCAACCACTCCAGCCCACCTCTGCCCCTCATCCCCGTATGTATCA
CTCTACAACGTGGGAAAGCAAAATCAAGAACTGCTTGTGCCTTCCCCCCA
GGCTTGCTTCCCCCCGCCCCTCTTCCCCAAAACGTCTTGCTCCCCCCCCC
GCGCCCCTCAACCCCAACACCCCAACCAACTCCTCGAAACAAAAAGGACG
AGAGGTCATGGAGGCGCGGCACCGTGGTCTCCGCCCGGAGCAACGGCACT
TTTGCGGTCGAGTACGACGAAGCCGGCTCTCCGAAAGAAGACCGCATCAC
CGAAAACCGCCTTCGCTTTCGCCATGATCGCCACGGCGGCGGCGGCGGCG
GCGGCGGCGACGACGACGACGACGACGACGACGTACGGCGCCCTCGCGGC
GTCAGCAGCAGCAGCAGCAGAAACAACAACGCCAAGAACAGGCCGACCAA
AGAGAGCACCAGCAGCAGCAACAACAACCACAACAACCGCAACAAGCACA
ACAACACGGCCGACGACGACGGCGACGGCGACGACGACTTCAACAACAAC
CAGGGCGGCTACGGGAGCGGTGGCGGTAGCCGTGACGGCGGCGGTCGCAA
CCGCCGTCTCCACAGCAGCAGTCGCCGAGACAACGACGACCGCAGTGATA
GGGATCGAGACCGCCACCGCCACCGCCGCAACGACAGCAGCAGCGAGGGG
CGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAAATGAAAA
GTTCGAGGAAGGAGACACGGTGTTCGCGGCGGGAGGACGGGGGGGAGAGG
AGTGGACGGAGGCCAGGGTGGAGGCGTACCTCGGGGACGACCTGTACCGC
GTCAGGATTAGCGATGGCTCCGGCACCAAAGAGCTAGAATCGCGCAAGTT
GAGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig182:127099..136005-

>mRNA_P-littoralis_Contig182.30.1 ID=mRNA_P-littoralis_Contig182.30.1|Name=mRNA_P-littoralis_Contig182.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3966bp|location=Sequence derived from alignment at P-littoralis_Contig182:127099..136005- (Pylaiella littoralis U1_48)
ATGGAGACGCCGTCCCATAATCGGCCGGTGACTGCAGGCTCCATCTCACG
TCAACGACGTGGGCACTCGAACGACCATGACTACAATGACGACAACGATT
GTGAGGATGTCTGTTCAGCACAACAGCAGCACCCTACACCTAATCGTCCC
TCCACGCAGCGAAGCACCAGATCGACCCCGCGTGCCCTGGCCGAGGCCGG
GAAACGATTATCTGGCGGTACTAGGTCGGACGAAGACGCCATAAGAACGA
TGCGGTCGGAAATGGAAACACTCAAAACAAAGCTCAGAGCGTCCGATTTG
GCGAAGTCTCAAGCGCAGCAGGTTCAATTGCAGCGACAAGGCGCCGAAAC
GGCCAAACTAGAGCGATACATAGGCCAGCTCGTCGACGACCGGGGTGGTG
TCGATGATGCCGTCTTGGAAAACATGGTTAGAGAAATTGAGAGGAGTTCG
CATGCGAAGCGCGCTTTGAAGGAGGTGGCGGAGCTCAAGTCGGCCCTCGA
TCGCAAGGAGAAACAGGTTACCATGCTCCGCAAATTGCAAGCCGTTGAGT
ACACCCTCAAGCTCGCCGAAGAGAAGGAGGCGCTCGCTGTCAGAGTGGAG
AGGCTCCTCACCGAATCCACCAACAAGCACATCGGTTCCACCGACAACGT
AGAAGAAAGCGACCAAAACCGCCGCGGCCATGCACCGTCATCATCATCAT
CATCATCATCCCCTAGCAAGACTAGTCTGGCCGAGCTGGAGAGACTGCGA
GCCCAAAACTTGGACATGCGTAAGGAATCAGCGCGTCTTCGCGCAGAGTT
GAACTTAGCCAAGATTGGCGGCGAAGGTGGTCACGGTGGTAGCAGGGGTC
ACGGTCGCGGTGAGAAGCGTGGTAACACCAATGGAGCAATGTTTTATGCG
GGTCAGGCCGTGGACTGCCGAAAGGAAGGTTCGGATTCGTGGCATCCCGC
CACTATCGATTGTGCACGTATGGTGGTCGAGCCCCTAGGTAGCGGAGACC
GAGGGAGTCCCAGGAAGTACCTCTACAGCGTATCGTTCGTAAATAAGGAA
GGCAGACATGAAGACGACGTCCCCGAGCATCGAATTCGAGCGGCTGGCGG
CGGCGACGGTGATGATGGCCCCGGTCAGGGCTCAAGCTGGGTCGTCAAAA
ATCGCCACGGTGACACAATCATCCGCTCAAAGGTGTTCAGATCTGGGGAC
TCCGTCTTCGTTCTGGACGGCGGCAGCGGCCTTGACGGCGGTCGGTCTAG
CAAGGGCGACGAAAAGTGGAGCCCCGGCGAGGTCATACGGAGGAACGACA
ACGGCACCTACCGCGTGGTGGTGTTGGGAGGGCGAGCCGATGGGAAAGAT
TTCCACCCCACGATGCTCCGCACACAGGGCAACCCTGGAGACGAAGAGGA
GGTCGGCTCACCTCAGACGAAAGCGGACGTAACGTCGCCGGCTGAGGAGG
CTGAGAGGCGGTACGCGGAACAGCGGGAGGAGCTGTTAGCCATCGCGCGC
AGTGCTCTGCCCGCCCCCCTCCAGGTCGGGCAGGACGTCCTGGCTAAAAA
CCGGGGCTCGACAGTGTGGGGGTCCGGGATCGTGGTGGGCACCGAAGACG
GCAATCTGCGCTATAGTGTCGAGTTTGATTTTGGCGACGTCGAGGAAAGT
CTCCCCTGCATCTTCGTCCGGCCTCGGAGAGGGGGCCAATTGGCGTCGGA
CACGCGTGCGCGCGTAGGGGACGCCGTTTTGGTCCAGAAACACGGCAAGC
ATGATGCGGGGGGCGGCGACGACAGCGACTGGAGGACGGCGCGGTTCGAG
CGCTACGACGAGGGCTCGGTAGACTTCTGCCACGTCGTTTTTGCCGGGGA
ACAGTCTGTGACCAGAGTGCGAGCGACGCGGGTGCGGCAGCTTTATCGCT
CCGCCTCGACGGCTGGGGAACGGCTCCACGACGAAGAAATGGTCCCCGGT
AACCCCCCACCCCCGACAAAGCCCGTGCGCGCCAAGAAGCACCAAGAGGG
GGACGTTGTTCTTGCGTGCATCCCCAACGCTAAGAAGTGGACGCCGGCCC
TGATCACCGGGGTCAAGGGGCGCGGGCGCTACTCCGTCGAATGGGCGGAC
GGCGTGAGGGCGAACTCCCTCCTGTTCATGCACATCGCATCCATGAAAGG
TCCCGCCAGAAATGGCTCGTTTGCCGATGAAAAAGCCGCTCGGGTGGCCT
CTGATACCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCGGC
AAACCGCGCTCTCCTCAAAGGTTGGACAACAACAGTGCCAATCACGATCG
CAATCGCACTCTTTCACAAGAACGCGGCGACGGCGTGAACGCGACCCCAA
GCACGGTCCGCTTGCGCCAGCGAGCTCTCGAGGTTGGTGAACCCGTCCTC
GCCAAGAGCTCGCCAGACCACGGCTTCTGGAACCCCGGCTGCATCACCAG
GGCCGATGGAGGGGGGAAGTACGACGTGCGGTTCATGGACGGGACGATGG
CCGAGGATCTGTCGTTCCTGTTCGTGCGCGGACTGAGCTCCCAACAATGC
GACGACGATGAGAAGGCCGAGGCGGCGGGGTCCCACGGCAGGGTCGACGG
CAGTGCTCCTGAATTCAACCATCCCAGTGGTGGGAAGAGGGACCCGGTTG
TTGGGGACACGGTGTACGTACTCAAGCGCGGCCATTCCCCGGACACGACC
TCGCGAGACATGGCCAGCAGGGATCTGTGGCGTTCGGGCACGATCACCGC
CGCCGCGAGCGGTCGCTTTACCGTGCAGTACCACCTCGAGGAGGGGGCAC
CTAAGGAGTCGAGGATAGTCCCGGCCCGCCTTCGCTTCCGGAACGTCATC
CGCCAGAAGGCGGCGCAGAAGGGTGATGCCGTTTTGGCGCTATCGAAAAC
TCCCGGTCGCGGGTGGATGATGGGAGCCGTCATCGCCCGTGACAGCTTCG
GGAAGTACACCATCGCCTTCGCGGACGGGACCGAGTCGCACGGAATCAGG
TATTTTGTCAACCTTCGACGCGTGGTCGGCAACGCCGTCGACGACAAGGA
CCACGAACGCGAGGCGGAAAAGCCCGTCCGGCGCGCCATCCGGCAGCGGA
GGTTCAAGAAGGGCGAGCTCGCCCTGGCGAAGCACCCCGAATCGCGAAAA
TGGGTCGTCGTCAAGATTGTGGAGGCTCTTCCCTCGGGCAGGTACGATTT
GGAGTTCCTGGTTGACGGGACCCCGAACGCCTCTGGGGTATTGTTCCATC
ACATCCGGCACCTGAACCTCAGCAATTTTGATCCGGTCAACTCTGGTGAC
GGCTGTGAAGACTCTCATGAAAGCAAGGCGGCGGTGGAACGTGCCCAGCG
TGCATCCACGATGGAGAGCAGCCCGGACGTCAAGCAACGCTCGGCAGTCC
ACGACGAAAGCTGGGACGATCATGACGACTACGGTGGACACGGTCGCGGC
AGCAGCGACCGTATTAGAATGGCATCTGAAAACAAGGCTCTCGACGTCGG
GTCGGATGTGTACGTGCTCAGGCGCGGCAAGAGTTCAGATGCTGATCTTG
AGGACGAGAGGTCATGGAGGCGCGGCACCGTGGTCTCCGCCCGGAGCAAC
GGCACTTTTGCGGTCGAGTACGACGAAGCCGGCTCTCCGAAAGAAGACCG
CATCACCGAAAACCGCCTTCGCTTTCGCCATGATCGCCACGGCGGCGGCG
GCGGCGGCGGCGGCGACGACGACGACGACGACGACGACGTACGGCGCCCT
CGCGGCGGGCGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGG
AAATGAAAAGTTCGAGGAAGGAGACACGGTGTTCGCGGCGGGAGGACGGG
GGGGAGAGGAGTGGACGGAGGCCAGGGTGGAGGCGTACCTCGGGGACGAC
CTGTACCGCGTCAGGATTAGCGATGGCTCCGGCACCAAAGAGCTAGAATC
GCGCAAGTTGAGGTGA
back to top