mRNA_P-littoralis_Contig180.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.95.1
Unique NamemRNA_P-littoralis_Contig180.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig180.95.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 6.920e-55
Identity = 109/128 (85.16%), Postives = 118/128 (92.19%), Query Frame = 1 
Query: 1030 AETVVPELRVVTFDVREPSLGAAVEGHVVILEGSCYVWAGTEGSSAQGSLAAAVGTRFNGGMPTATPLLAGEGAGEAGXXXXGVSVSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 1413
            +E V+PEL+VV+FDVREP+LGA+V GHVV+L GSCYVWA TEGS AQGSLAAAVGTRF+GGMPTATPLLAGEGAGEAG    GV VSMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE
Sbjct:  232 SEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGGG--GVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 357
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BLAST of mRNA_P-littoralis_Contig180.95.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.110e-54
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 1 
Query: 1030 AETVVPELRVVTFDVREPSLGAAVEGHVVILEGSCYVWAGTEGSSAQGSLAAAVGTRFNGGMPTATPLLAGEGAGEAGXXXXGVSVSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 1413
            +E V+PEL++V+FDVREP+LGA+V GHVV+L GSCYVWA TEGS AQGSLAAAVGTRF+GGMPTATPLLAGEGAGEAG    GV VSMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE
Sbjct:  237 SEAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGEG--GVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 362
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BLAST of mRNA_P-littoralis_Contig180.95.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.780e-10
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 1 
Query: 1027 VAETVVPELRVVTFDVREPSLGAAVEGHVVILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFNGGMPTATPLLAGEGAGEAGXXXXGVSVSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 1413
            V++    + R+V F  +E  +       + +L  +C+VW G +GS A+ GS++ AV TR++  +P A+ L+ G G          V   MAQRL  RTG+ VFVSC+L ED   L A VE ++VA L+ E
Sbjct:   13 VSDAATGKTRIVDF--QEEFVDQKFNVQIWLLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGSG--------DEVEQQMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREE 131
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BLAST of mRNA_P-littoralis_Contig180.95.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.000e-5
Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 1 
Query: 1054 RVVTFDVREPSLGAAVEGH----VVILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFNGGMPTATPLLAGEGAGEAGXXXXGVSVSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAEA 1416
            R++ FD      G  V+ H    + +L  +C+VW G + ++   GS++ AV T+++  +P A+ L+ G    E           MAQRL  RTGR VFVSC+L +D   L A +E  ++  L  E+
Sbjct:   17 RILDFD------GEFVDQHFSVQIWLLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLIGGGNEMEQ---------QMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQES 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2Q5_ECTSI6.920e-5585.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L5_9PHAE2.110e-5484.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485KKL7_9STRA5.780e-1037.69Aste57867_8572 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WHC5_9STRA6.000e-533.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:353394..356968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008613088.1
Preferred namePSMG4
PFAMsPAC4
Model size2124
Max annot lvl2759|Eukaryota
KEGG koko:K11878
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000395
EggNOG OGs2C76C@1|root,2S31R@2759|Eukaryota
Descriptionproteasome assembly
Cds size1359
COG categoryS
BRITEko00000,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.8854175-UTR-P-littoralis_Contig180:353393..3534531680789872.8854175-UTR-P-littoralis_Contig180:353393..353453Pylaiella littoralis U1_48UTRP-littoralis_Contig180 353394..353453 +
1680789872.9324715-UTR-P-littoralis_Contig180:356263..3569681680789872.9324715-UTR-P-littoralis_Contig180:356263..356968Pylaiella littoralis U1_48UTRP-littoralis_Contig180 356264..356968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789872.8986616-CDS-P-littoralis_Contig180:353453..3534751680789872.8986616-CDS-P-littoralis_Contig180:353453..353475Pylaiella littoralis U1_48CDSP-littoralis_Contig180 353454..353475 +
1680789872.9102817-CDS-P-littoralis_Contig180:354447..3545311680789872.9102817-CDS-P-littoralis_Contig180:354447..354531Pylaiella littoralis U1_48CDSP-littoralis_Contig180 354448..354531 +
1680789872.923965-CDS-P-littoralis_Contig180:355010..3562631680789872.923965-CDS-P-littoralis_Contig180:355010..356263Pylaiella littoralis U1_48CDSP-littoralis_Contig180 355011..356263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.95.1prot_P-littoralis_Contig180.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 353454..356263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.95.1

>prot_P-littoralis_Contig180.95.1 ID=prot_P-littoralis_Contig180.95.1|Name=mRNA_P-littoralis_Contig180.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=453bp
MDIEDDEDFAIFDEETTKTIKDEHEKDMEHAAHVIGARRIGLITGDAGES
TTTAGKGLMSKLSSATSLFFRKKTPAPTPTAAAAATSSTTATPPPAAQMI
PAASDTPTHSVALAPPPPEVPEKGEADTPTSTNAMKRPPPVPSTVQPTTP
PEAPEAAKDPTAAATEQQPLTPSAPATAAAPAALATAQEPTEAKRLHSEE
EKPGTKEPTDPTSDAAAAAETVVPEQAPTPSAPATATAPATAQEPTKTKR
LHPEEEKLETEEPTGPTSDAAAAVAETVVPEQAPTSSAPATAQEPTGAKR
LHSEEEQPETKERTGPTSDAAVVAETVVPELRVVTFDVREPSLGAAVEGH
VVILEGSCYVWAGTEGSSAQGSLAAAVGTRFNGGMPTATPLLAGEGAGEA
GAGAGGVSVSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKA
EA*
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mRNA from alignment at P-littoralis_Contig180:353394..356968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.95.1 ID=mRNA_P-littoralis_Contig180.95.1|Name=mRNA_P-littoralis_Contig180.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3575bp|location=Sequence derived from alignment at P-littoralis_Contig180:353394..356968+ (Pylaiella littoralis U1_48)
CGCCGACTGCTCTGCAAACGAATCCCTAGGGTCGTCTTGTGTTCTGTCCA
CTGCGACACCATGGACATAGAAGATGACGAGGGTGAGTTTTTCATCCTGT
TTTATGTGGGCAGTGTAGCGTTGTTATAAATTCAAAAAGATGTCAGGTGC
CTGACAGCAGTACGATTCAACAACCCTTTATTATCTTCAACAAAAACCAA
CCCAGTCCGCTCTAACCCTCCGACACTGCTGTCTCTTGCTCTCGTCGACC
AGTTCTCAGCTTCCAGTTGGCGCTTCCTCGTAAGAAAGAGACTGATACGA
AACTGAGCCCCAGCTTTAAAAAAAAAAACTTCGTACTTCGAATTAAGTGG
GTGTAAGAAATTGGAAATTGGGCTCAGCGGCCTGCCCCACACCAACCCTA
ACATCCGAAGTACAGAGTTGTACTAATGGGACTACACACACAGCAGTCAT
GGGCTGTGCTCAGCAGTGGTGGTGACAACGTAGGAATTTGAGCCTCAGCG
CCTCGGCGAAAATAAGCGTCTCCTACTACTTGTAGCCGGCGCCAACTCTT
TGCTTTCCGCACTTCTCTCAGGCAGCCGTCTGTACATGTACATGCATAAT
CCCTGGTGTCACCTTGGTTCTGGTTTACGAGCAGCGCTTCGAGCAGAATT
GGTTTTGCACGCTTCAGATTTGATCGATTGCTCGCCTCACCGACTCTCGT
CACCAGAAGGGAATGACAGCAGCAGATTCCAGCAGTACGGATGTAGACCG
CAACACATCGTTTGATGGCACCTGTAGGCGCACACACCACCAATCCATGT
GTCAAAGCTTGTGTGCTCTATGCCCATGCCACTCTAAGGTGCATCCGGGA
TAAAATTACGCGCAACACCGCCGTGATGCAGGCGAATTATAAGGACGTCG
TGGCAAATTCGCAGAGCACAAAGCCCATGCACAACACGTTTATAGTCGCC
TCGTATCGCACAAGTCCGGTTTCGCATGCCTAGCTGCTACATACATGCCT
GCGTCGCTGCTAACTCGATTGTTGCTGGTTCAAATGGCTGGACCCGGGGG
GCAGATTTCGCGATTTTTGACGAGGAGACGACCAAGACAATAAAGGACGA
ACATGAAAAGGACATGGAACACGCCGCACACGTCATCGGTGAGAGGAGTT
CAGAGCTGACTTGACGGCAGCAAGTAGCGCAGCCTGCTCCTCTCGCCACT
TTCCGACGACTTTCGAGCCACTCCGGTTGTTTGTGTATGTGTGATGTATG
ATATGTGTGTACAATGAAGTACTACCTGGAACACAAGAGCAGCATGCAGC
GATATGATAGCATGCGCCAGCCGCTACCGAGGGGGTATGAGACTCGGCGT
AACGCCTTTTGGGTTGAGCTTTAATGTCCCCCCCTCAGCAGTTTGTTTTG
TGGACGGGGTTGTTCTCGACCGCTTTGTATGTCGGTGCGACCATACCAAA
AAAGTGCTAGCCTGCGCGTTTACCAAGCCTACCGCACCGATTCCTAAACG
TACCTATCTCATGAGATCTTGGACAAGTGCTGTATTGCACTCAAGGTTTT
GCGACTTAAAAACGGTTGTTTCTTCTTGTTCCAATTCCGTGTTCCTCTTT
TGATGACACGCGTGCAGGCGCTCGAAGGATTGGCCTCATTACAGGAGATG
CTGGAGAATCAACAACTACGGCTGGCAAGGGGCTGATGAGCAAACTGTCG
TCAGCGACCTCCCTGTTCTTCCGGAAAAAAACACCAGCGCCGACACCCAC
AGCAGCAGCGGCCGCGACATCTTCGACTACGGCAACCCCACCACCAGCAG
CACAAATGATACCAGCAGCAAGCGATACGCCAACTCATAGCGTAGCTCTT
GCCCCGCCGCCACCTGAAGTCCCAGAAAAGGGGGAGGCTGATACACCAAC
GTCGACCAATGCGATGAAGCGACCACCACCGGTGCCTTCTACCGTTCAAC
CGACCACGCCGCCAGAGGCACCCGAGGCGGCGAAGGACCCGACCGCGGCG
GCGACCGAACAGCAACCGCTGACCCCGAGTGCACCAGCGACTGCGGCTGC
GCCAGCGGCGCTAGCGACTGCGCAAGAACCAACGGAGGCGAAACGGTTAC
ATTCCGAGGAGGAAAAGCCAGGCACTAAAGAACCCACGGATCCAACCTCA
GACGCAGCAGCAGCGGCTGAAACGGTTGTCCCTGAGCAAGCACCGACCCC
GAGTGCACCAGCGACTGCGACTGCACCAGCGACTGCACAAGAACCAACGA
AGACGAAACGGTTACATCCCGAGGAGGAAAAGCTAGAAACTGAAGAACCC
ACGGGCCCAACCTCAGACGCAGCAGCAGCAGTGGCTGAAACGGTTGTCCC
GGAGCAAGCACCGACCTCGAGTGCACCAGCGACTGCACAAGAACCAACAG
GGGCGAAACGGTTACATTCCGAGGAGGAACAGCCAGAGACTAAAGAACGC
ACGGGCCCAACCTCAGATGCAGCAGTCGTGGCTGAAACGGTCGTCCCTGA
GCTGAGAGTGGTAACGTTTGACGTGCGCGAGCCGTCCCTCGGCGCGGCTG
TGGAAGGTCACGTGGTCATCCTGGAAGGGTCCTGCTACGTGTGGGCGGGT
ACGGAGGGTTCGTCCGCTCAGGGATCGTTGGCAGCGGCCGTTGGAACGCG
GTTCAACGGAGGGATGCCGACAGCGACGCCTTTGCTCGCCGGGGAAGGGG
CCGGGGAGGCGGGGGCAGGAGCGGGGGGCGTGAGCGTGAGCATGGCGCAG
AGACTTTGTAGGCGCACCGGGAGGGTGGTGTTTGTGAGCTGCGATCTGTC
GGAGGATTCGCAGATTCTGGTGGCGGCGGTTGAGGCGAAGGTGGTCGCTC
TCCTCAAAGCTGAGGCCTGACCCTCGTCCCGTGTGTGTACATAGAGTTTG
CGGTGGGTGTGCACGTATCGTGGGCCTCGAGGATATAGGCAATCGCCAAT
CGAAGTGGAAATACGGTTGCTGCGCTGAAGATGAAGGATTTTGAAGGGAG
ACACTTTTGCCACTGTTATCTCCGCACTTTGGGAACGTACGTTGTGCGCT
GCCATGATGTTGTTGCCAGATGCCTGTGCTGCTCTCCTTGATATTGGATG
CGAGTGTTGGTGTTCGAGAGGGGCGAAGGCGCTTTTCCCGATGTGACCAT
GTGTCTCCGCAAACAGCATGGCATTTGTCGACCGATACATGGCAAAACAC
ACACCATACTTTAGCTCCAGTCTTGCCCCCGCCATTCTAGATACGCGTAC
TGTACTCCGTGCAGGATCAGGCATTCGAGGTAGCACGACTAAACGTGGTC
GGTTGTTGGCCGATGGCTTGAAAATGCGCCACAACCAGTTCATGATTTGT
GTGGGTCACCCGGCACCCTGCCGACGATACGCACCTGTAGCTCCCCTATG
GGCGGCAGCGTGCGTTCGTTCCGGATGAAATGGCATGCCGTACATAAGGG
CTTGCCGAGGATTTTCCCCTCAACTTTGCAGACTCTATGGGTCACCATTT
TGGACAGATTGCGTTATAAACTTGTAGAGAAACGGCAAGCCCCAAACTGC
TCCATTCGGTTTGGGCCACTGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:353394..356968+

>mRNA_P-littoralis_Contig180.95.1 ID=mRNA_P-littoralis_Contig180.95.1|Name=mRNA_P-littoralis_Contig180.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1359bp|location=Sequence derived from alignment at P-littoralis_Contig180:353394..356968+ (Pylaiella littoralis U1_48)
ATGGACATAGAAGATGACGAGGATTTCGCGATTTTTGACGAGGAGACGAC
CAAGACAATAAAGGACGAACATGAAAAGGACATGGAACACGCCGCACACG
TCATCGGCGCTCGAAGGATTGGCCTCATTACAGGAGATGCTGGAGAATCA
ACAACTACGGCTGGCAAGGGGCTGATGAGCAAACTGTCGTCAGCGACCTC
CCTGTTCTTCCGGAAAAAAACACCAGCGCCGACACCCACAGCAGCAGCGG
CCGCGACATCTTCGACTACGGCAACCCCACCACCAGCAGCACAAATGATA
CCAGCAGCAAGCGATACGCCAACTCATAGCGTAGCTCTTGCCCCGCCGCC
ACCTGAAGTCCCAGAAAAGGGGGAGGCTGATACACCAACGTCGACCAATG
CGATGAAGCGACCACCACCGGTGCCTTCTACCGTTCAACCGACCACGCCG
CCAGAGGCACCCGAGGCGGCGAAGGACCCGACCGCGGCGGCGACCGAACA
GCAACCGCTGACCCCGAGTGCACCAGCGACTGCGGCTGCGCCAGCGGCGC
TAGCGACTGCGCAAGAACCAACGGAGGCGAAACGGTTACATTCCGAGGAG
GAAAAGCCAGGCACTAAAGAACCCACGGATCCAACCTCAGACGCAGCAGC
AGCGGCTGAAACGGTTGTCCCTGAGCAAGCACCGACCCCGAGTGCACCAG
CGACTGCGACTGCACCAGCGACTGCACAAGAACCAACGAAGACGAAACGG
TTACATCCCGAGGAGGAAAAGCTAGAAACTGAAGAACCCACGGGCCCAAC
CTCAGACGCAGCAGCAGCAGTGGCTGAAACGGTTGTCCCGGAGCAAGCAC
CGACCTCGAGTGCACCAGCGACTGCACAAGAACCAACAGGGGCGAAACGG
TTACATTCCGAGGAGGAACAGCCAGAGACTAAAGAACGCACGGGCCCAAC
CTCAGATGCAGCAGTCGTGGCTGAAACGGTCGTCCCTGAGCTGAGAGTGG
TAACGTTTGACGTGCGCGAGCCGTCCCTCGGCGCGGCTGTGGAAGGTCAC
GTGGTCATCCTGGAAGGGTCCTGCTACGTGTGGGCGGGTACGGAGGGTTC
GTCCGCTCAGGGATCGTTGGCAGCGGCCGTTGGAACGCGGTTCAACGGAG
GGATGCCGACAGCGACGCCTTTGCTCGCCGGGGAAGGGGCCGGGGAGGCG
GGGGCAGGAGCGGGGGGCGTGAGCGTGAGCATGGCGCAGAGACTTTGTAG
GCGCACCGGGAGGGTGGTGTTTGTGAGCTGCGATCTGTCGGAGGATTCGC
AGATTCTGGTGGCGGCGGTTGAGGCGAAGGTGGTCGCTCTCCTCAAAGCT
GAGGCCTGA
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