mRNA_P-littoralis_Contig18.188.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.188.1
Unique NamemRNA_P-littoralis_Contig18.188.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:807681..808925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size421
Hectar predicted targeting categoryother localisation
Exons3
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789867.992386-CDS-P-littoralis_Contig18:807682..8077511680789867.992386-CDS-P-littoralis_Contig18:807682..807751Pylaiella littoralis U1_48CDSP-littoralis_Contig18 807683..807751 -
1680789868.0017326-CDS-P-littoralis_Contig18:808213..8083181680789868.0017326-CDS-P-littoralis_Contig18:808213..808318Pylaiella littoralis U1_48CDSP-littoralis_Contig18 808214..808318 -
1680789868.0162368-CDS-P-littoralis_Contig18:808682..8089251680789868.0162368-CDS-P-littoralis_Contig18:808682..808925Pylaiella littoralis U1_48CDSP-littoralis_Contig18 808683..808925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.188.1prot_P-littoralis_Contig18.188.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 807683..808925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.188.1

>prot_P-littoralis_Contig18.188.1 ID=prot_P-littoralis_Contig18.188.1|Name=mRNA_P-littoralis_Contig18.188.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
DKDDCGRLVEGFREDEAWNRRGCAERPASLRRENFGGGSAGDGTESGCGT
ESGRGKQSCLGMGEEKKTSARKESDLGRDLLSPGHGRKPKHGARIRSTKM
DVISSEESAPFSPPKEHGGHRASASANATNRSSHLLKAI
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mRNA from alignment at P-littoralis_Contig18:807681..808925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.188.1 ID=mRNA_P-littoralis_Contig18.188.1|Name=mRNA_P-littoralis_Contig18.188.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig18:807681..808925- (Pylaiella littoralis U1_48)
GACAAAGACGATTGCGGCAGGCTCGTCGAGGGTTTTCGAGAAGATGAGGC
GTGGAACAGGCGGGGTTGTGCTGAACGACCTGCTTCCCTCCGTAGAGAGA
ACTTTGGTGGTGGTAGTGCCGGTGACGGCACTGAGAGCGGCTGTGGCACT
GAAAGTGGCCGAGGCAAACAGAGCTGTCTCGGCATGGGAGAGGAGAAGAA
AACGAGCGCCAGAAAGGAGTCTGACCTAGGTAGAGATCTACTGGTGAGTT
CCACGAAATTTTTACGCAACTCACTGAAAAAGCGTGAAGCACTCGGTGTG
GTGGTGTCACATCGGTCGTTTCGTCGAAGCGCCTATTCCATCAAGTGTGG
GTTTGCTGGAGTTCGGGCGAATGTCGTGCTGGGCACTCTGAGCATTCCGA
AAGCTCACCAATCAGAGCGAAGTTAGCTTGAGGAAGTACGAGGAGTTGAC
CTACGTCAGCTTGCCGCCATCACCACATGCCCATGGTTGAAATCTCGAAC
AAAGCAGCATGTTCAAGGGGATAGATGGGTATATGGCCCCTCTTCCCAAG
CTTCGCCCTCACCAAATAGAACCACGAACACCTGGTCGGTCCTGCCAAAC
GAAACAGTCCCCGGGACACGGTAGAAAACCGAAGCATGGCGCAAGGATAA
GGAGCACGAAAATGGACGTGATCTCCAGCGAGGAATCAGCCCCCTTCAGT
CCACCGAAGGAGGTAAGCAATGGAAACATACATATTGAACTTGTACAGTT
CTTGATCTTGCTTGTCGTGAGAAATGAGGGTCAAGGGTACAGGAGCACCG
TCACGGCTCGGAAGAGAGAGGTGCCAACGCCTTAGATGGGGACGGCGTGG
CATTGTGTGAGTTACCACGTATTTGCCTGGTCGACTGCGTGCCAAACACC
AATACCGCACCAGGCGTTGTCGGGAACGAAATGTTCTGCCGGAGCTAGGT
CAGACAAGGTATCACCTCTCCGCCACACGTTCCAATTTAGCTCCAGCGAA
ACATCTCTCAGGGAATCGAGACAGTGCCAGCCAGTCTCCCGAGAATCACG
CCTGTGTACGTAAGGCAGGTTGGGAACTGGCTAGTACCAACGTTTCCTCA
CGCATTGATTTGGGGGTGATAACCTAAAAAAGTCGTACTCGGCACATCTA
TGCGTGTGCTTCGATTTTCATCAGCACGGCGGGCACAGAGCCAGCGCTTC
CGCAAACGCGACCAACCGCAGCTCCCATCTTCTGAAGGCAATTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:807681..808925-

>mRNA_P-littoralis_Contig18.188.1 ID=mRNA_P-littoralis_Contig18.188.1|Name=mRNA_P-littoralis_Contig18.188.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig18:807681..808925- (Pylaiella littoralis U1_48)
GACAAAGACGATTGCGGCAGGCTCGTCGAGGGTTTTCGAGAAGATGAGGC
GTGGAACAGGCGGGGTTGTGCTGAACGACCTGCTTCCCTCCGTAGAGAGA
ACTTTGGTGGTGGTAGTGCCGGTGACGGCACTGAGAGCGGCTGTGGCACT
GAAAGTGGCCGAGGCAAACAGAGCTGTCTCGGCATGGGAGAGGAGAAGAA
AACGAGCGCCAGAAAGGAGTCTGACCTAGGTAGAGATCTACTGTCCCCGG
GACACGGTAGAAAACCGAAGCATGGCGCAAGGATAAGGAGCACGAAAATG
GACGTGATCTCCAGCGAGGAATCAGCCCCCTTCAGTCCACCGAAGGAGCA
CGGCGGGCACAGAGCCAGCGCTTCCGCAAACGCGACCAACCGCAGCTCCC
ATCTTCTGAAGGCAATT
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