mRNA_P-littoralis_Contig18.162.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.162.1
Unique NamemRNA_P-littoralis_Contig18.162.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.162.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.870e-47
Identity = 148/226 (65.49%), Postives = 157/226 (69.47%), Query Frame = 3 
Query:  699 EPSEGSTTASED--GVEAEGDGG-WAAAEDE----------------EGE-TXXXXXXXXXXXLAEYAAAKAEEDAIKQERRAIRDNPAVIPKLGEFFVHDDRSSRGSGNKAARGKXXXXXXXXXXXXXXXXXXXXXXXXXDSGLGRWRADALPLAKKKNSGEQWVRG--KKKAVDPDD-DDLPWGHEGFEEVLRAEEEGRPIASSSGFWSNPTGKGGRSGAWRGG 1307
            EP E  + A ED  G EAEG GG W  + DE                +GE T           +AEYAAAKAEEDAIKQERRAIR+NPAVIPKLG FFVHDDR   G         XXXXXXXXXXXXXXXXXXXXXXXXX  G+GRWRADALP  KK  SG+  +R   KKK VDPD  DDLPWGHEG+EEVLRAEEEGRPIASSSGFWSNPTGK GRSGAWRGG
Sbjct:  101 EPEERGSLAGEDQEGHEAEGSGGGWGGSADEKEXXXXXXXXXXXXXXDGEDTEEETEEEREARMAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRG--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGRWRADALPSPKKNKSGDVGLRARRKKKPVDPDXXDDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKDGRSGAWRGG 324
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BLAST of mRNA_P-littoralis_Contig18.162.1 vs. uniprot
Match: D8LS31_ECTSI (Btz domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS31_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.900e-15
Identity = 81/127 (63.78%), Postives = 87/127 (68.50%), Query Frame = 3 
Query:  828 LAEYAAAKAEEDAIKQERRAIRDNPAVIPKLGEFFVHDDRSSRGSGNKAARGKXXXXXXXXXXXXXXXXXXXXXXXXXD-SGLGRWRADALPLAKKKNSG---EQWVRGKKKAVDPDDDDLPWGHEG 1196
            +AEYAAAKAEEDAIKQERRAIR+NPAVIPKLG FFVHDDR             XXXXXXXXXXXXXXXXXXXXXXXXX   G+GRWRADALP  KK   G    +W R ++        D  W H G
Sbjct:  151 MAEYAAAKAEEDAIKQERRAIRENPAVIPKLGAFFVHDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVGRWRADALPSPKKNKGGGVERRWWRVERSGGG----DCTWVHSG 273
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE1.870e-4765.49Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LS31_ECTSI1.900e-1563.78Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:708086..713661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1507
Hectar predicted targeting categoryother localisation
Exons6
Cds size1194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.162.1prot_P-littoralis_Contig18.162.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 708397..713661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789867.2108836-UTR-P-littoralis_Contig18:708085..7083961680789867.2108836-UTR-P-littoralis_Contig18:708085..708396Pylaiella littoralis U1_48UTRP-littoralis_Contig18 708086..708396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789867.2197998-CDS-P-littoralis_Contig18:708396..7086961680789867.2197998-CDS-P-littoralis_Contig18:708396..708696Pylaiella littoralis U1_48CDSP-littoralis_Contig18 708397..708696 +
1680789867.2281017-CDS-P-littoralis_Contig18:710014..7101021680789867.2281017-CDS-P-littoralis_Contig18:710014..710102Pylaiella littoralis U1_48CDSP-littoralis_Contig18 710015..710102 +
1680789867.2371612-CDS-P-littoralis_Contig18:711040..7112161680789867.2371612-CDS-P-littoralis_Contig18:711040..711216Pylaiella littoralis U1_48CDSP-littoralis_Contig18 711041..711216 +
1680789867.2476337-CDS-P-littoralis_Contig18:711539..7117961680789867.2476337-CDS-P-littoralis_Contig18:711539..711796Pylaiella littoralis U1_48CDSP-littoralis_Contig18 711540..711796 +
1680789867.2600198-CDS-P-littoralis_Contig18:712598..7126681680789867.2600198-CDS-P-littoralis_Contig18:712598..712668Pylaiella littoralis U1_48CDSP-littoralis_Contig18 712599..712668 +
1680789867.269819-CDS-P-littoralis_Contig18:713358..7136611680789867.269819-CDS-P-littoralis_Contig18:713358..713661Pylaiella littoralis U1_48CDSP-littoralis_Contig18 713359..713661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.162.1

>prot_P-littoralis_Contig18.162.1 ID=prot_P-littoralis_Contig18.162.1|Name=mRNA_P-littoralis_Contig18.162.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=398bp
MSSRRRKMSEDESSSEEQEEIEVLSDQEDQDHDEEPDPASIPVPRSSFFT
PDGDNPEAVLSATEAESTDAESGAMEGDVGGDTGGGQEEGEESDDSEGSK
DTAAASTTATAGGEVVDEGSEATEAEPLDEPSEGSTTASEDGVEAEGDGG
WAAAEDEEGETEEESEEAREARLAEYAAAKAEEDAIKQERRAIRDNPAVI
PKLGEFFVHDDRSSRGSGNKAARGKQQQQQQHQRGGEDGGAGSSEGDEEE
DSGLGRWRADALPLAKKKNSGEQWVRGKKKAVDPDDDDLPWGHEGFEEVL
RAEEEGRPIASSSGFWSNPTGKGGRSGAWRGGGGGGGYGGDRARDRRGSG
GGGRGGGRRRGEQDNQRDTDSAYGGRSSNRQNSYENGDGGGDRVDRGG
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mRNA from alignment at P-littoralis_Contig18:708086..713661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.162.1 ID=mRNA_P-littoralis_Contig18.162.1|Name=mRNA_P-littoralis_Contig18.162.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5576bp|location=Sequence derived from alignment at P-littoralis_Contig18:708086..713661+ (Pylaiella littoralis U1_48)
CAGCAGTACAGCTACGCTGTCACCAAATACCAGACTCTTGCACACCAACA
GGATACACCACGAGACGTAAACCGAGGCATCAGTTTGTGCAAACTAGCCT
TCTCTTGTCCTGCCGTTTTTTTTTGCTGGCGAAGTCCCCCACACTTCGCT
GTCTCTCTGTGGTGTGGTTGTCTCCAAGGCTCTCTCAAGACACGATACAC
CAACGCCCCGGACAACAAGCAAGGTATCTCCTTGCACCACCACCCGCAAG
CAGGAGCGCCAACACAGCACGCGAACAATTTTAAAGAAAGGCGTAGTGCC
CCCACGGTACCATGTCGTCCAGGAGGAGGAAGATGTCGGAGGACGAGAGC
AGCAGCGAGGAACAAGAAGAGATCGAGGTGCTGTCGGATCAAGAGGATCA
AGATCATGATGAGGAGCCAGACCCCGCCTCTATCCCCGTTCCACGGTCTT
CCTTCTTCACACCCGACGGGGACAACCCGGAAGCAGTGCTATCGGCAACA
GAGGCTGAGAGCACCGATGCCGAGAGTGGAGCAATGGAAGGCGATGTTGG
CGGTGACACGGGAGGTGGGCAAGAGGAGGGGGAGGAAAGTGATGATTCCG
AGGGCAGCAAGGTGAGAGAACCAACAATGTTCCACACAGCAGTATTGATA
AGTTTTGAACGGGTACTGCCGTATCTGCCACTGCGGCCCACACGATAGCT
GATGCCTTTTGGGCGCCCTGCCTCTTCCCTGTGATCCAACCCCCTGGTAC
TCCGGGATCTGGTACACAACAAACTGATTTGGTTCATGATACCACCGCTC
ATGCATGTCTCCGCGGAAAGTGAACAGCGCCACGATCACTGCGGGTACTA
CACTCCCGCGTACCAGATGTGAAGCCAAACATGTCGGTTTCAGAGATCAT
TTTCAAATAAATGCCCCCGATAATCGACAAGCTGCTGGTGCAACGATACA
CAGCAATACTTGTACATACTGTAGTTGATCGGGGTTGAGAGGCAGTGTGC
GTTGGTGTGGTCGCTTCTCAAATAATTGCGCTAAGCCCTGTGCGCTGCTG
TGTGATGGCGTATGCCGTTGCTGCAGCTGCAGAACAGCAGGTGTTCCGCC
AGCACAACGAACACAAAACGCCTCTCATCATTTTTCACAAGAAAGGGACA
CCGATATTAACGTCCCCCCGACAACATAGCTGTGCGCATAAGACACGGGC
TGCGGTGAGTCCCCCCGACAACATAGCTGTGCGCATGAGACACGGGCTGC
GGTGAGTCCGGTAGCAATGGGAAGATGATATTTACCTCGTCAGTTCAAGC
CCTTGGTCGTAACGATTTGTGCTGAACTGGTGCCAAAGTGTTGCAAAATG
TGGCCATTGTCTCGGACACACTGACACACAGACACCAAACCTCGAAAATT
AAATAAAGGCACCCCCGTCTCATTTTTTTTTATGCGACATACACCCACAG
CTGGACATCACGACCAAATCGGTATTGATTCGAAGCAGTTCGACAATGAA
CTTACACTTCGCGTCGCTCGTGGACTGCTTCTCAATATCATACGTGTATC
GTTTCCGAGTAACAGTCCAACTGCTGTACGCACATACGAAGATCTTCGAA
GTTGATATGATCGCAGGATGACAAAACAGCAGGCTTTGCTGATTCTTGTC
AGTGTGGGCGCCCTCGCTTTGTTACCGGTGCAGCAGTAGTACAGTGCAGC
GCAGCAGTCCCTCCTCTTCCCTAACCAATGAAAAACATCCCAGATTTTTC
ATGCAACGGTTACGGTTGGTTCTTTGAAAGCTGTGTTTGTTTGGCTACGG
CAGTTGCTGCGGCCCAGAAAGCAACAGAATACAGACTAGGATCCCGTGTA
GCCTCAACGCATTTGTGGCGGTGCAATCAGTATATTAATTTCGCTGGATG
ATTATTTTTATTTTTTTCCAAACTTTCAGGATACCGCCGCAGCATCGACC
ACGGCCACAGCGGGAGGAGAGGTGGTGGATGAAGGAAGCGAAGCGACGGA
AGCTGAACCGCTCGACGGTGAGTCAAAGAAAGGATACACAAGCAGCCGAG
GTCGTGCCGTTCTTTTTCCTTCACGAACATTTATTTGCGCCTCCAGATAC
AAGTAATGAGATGAAATAAACGGGAAAATGGGCTTCACACAGCGTGTGAT
GGCCCACTCTGCTGCTACGCAGTTTTATCATATCATAACTCTATACTTTT
AAGCTTACCCGAATGAATGAAATCTACACGAATATTTTCCGATCCGCAAA
AAAAATAAAATGCAGCACGGGGGCAACGGCGACGGACATTAATGTGTGAT
CGGGGGGGGTGGGGGGGGCGTTGTTCGGTGGTTCGCCCGCGGCGAAATCG
GCTGTATACCCCCCGTTTTTTGCCATAAATTGTTGCCGTCTACAAAGAAA
GGCCTTTGATTTGTTTCGCTGCCAGGAGTTTGTCTTCACTTTTGTACCCG
AGAGGTATCCTTCCGAATGATGTGCGTAGCTTATTGCGGCAGAAAAGTGG
TGGGGGGAGTTCGTTGGTTTTGTGCTTTTTCGGAGCTCAGTGATGTTGCG
AGCAGTATCGCGTGTATGCTTGGAGAGCTTCAATCGCTTCTGTACGGAAT
GAGCGAAAGGGACGCCGGAATCAGCGAAAGGGACGCTGAGACCACGTTTT
TCATTTTAGTAGTTCGTTCGAGGGAAGTAGGGCGTATCATACCCCCTGTG
TACACCTATTATTGAACCATGCACATATTCTTTTACAAAAGCAACAGCGA
CAGCACTCTACGTGTGATACCAACGCCAGTATTTGTAACACACGGCTTGA
GTATGTGAGTGAAGGCATCAGTAGTGGAAGCGGCAACGACGATGGCGACT
GTGATGGTGATGATGGTGATGGTGATGGCGATGATGATGATGATGATGGT
GGTGGTGATGATGATGGTGATGACGATAATGATGATAATGTTGTTGATTT
TGCAGAGCCAAGCGAGGGTTCGACCACCGCATCGGAGGACGGAGTTGAGG
CCGAAGGAGACGGGGGTTGGGCTGCAGCTGAAGATGAAGAAGGGGAGACA
GAGGAAGAAAGTGAGGAAGCAAGGGAGGCTCGGCTAGCAGAATACGCAGC
GGCAAAGGCGGAAGAAGACGCGATCAAACAGGTATTCGGACTGCCGCCGC
TGCACTGACGTAGACTGCCGCTCCTCCATAGGTGCTGGACCTAGTTTCCA
AGGCAGATACTGCTTGATGCCGCAGGGAAATGCGTTGCCTACGACAACTG
CCACTCAACGACGAGATTGCATTTACCACCCACCGACAATGGCACGTGTG
CCGTTTGCTCTGCCCGGGAAAGACGTAAAAGGAACGAGAGGCTGGGGTTC
GCCTCCCCCCACCACCACCACCATCATATCACACAAAATCTGCCGATTCA
TGCACGGGCGATTTTTTCGTGACCTTTCCTTCCCCCCCCCGGTTGACCTC
GCAGGAGCGCCGAGCTATTCGCGACAACCCGGCCGTGATTCCCAAGCTGG
GCGAGTTTTTTGTGCACGACGACCGTAGCAGCCGTGGCTCCGGCAACAAA
GCTGCTAGGGGGAAACAGCAGCAACAGCAGCAGCACCAGAGAGGGGGCGA
GGATGGCGGCGCAGGGTCCTCCGAGGGAGATGAGGAGGAGGACTCCGGCC
TCGGGCGGTGGCGCGCGGACGCCCTTCCTCTTGCCAAGAAAAAAAACAGC
GGGGAACAGTGGTGAGAGTGGGGGCTCAACAGCTGCTGCTGCTGCTGCTC
TTTCGTGTGTGTATGTGTGTGTGTGTGCGTGTGCGTGTGCGGGGCAGTAG
TCGGCGGTCGGTGGTCAGGTGTCATTGTTCTGAACACGATCTGGGCAGCC
GGCAAAAACAAAGAAGTACGCCACCCCCCCCATCCCTTCACTCCCTCCCC
GTATTGTGTGTACCTCAATAAAGTTGCCACATGCGTTCTTTCTCTATTCA
GCAGTGTTGGATATCGAGCCCAAACAGTGTCATTCGATCTTAAAAAAAAC
GCGATACTCGATATTTTTTTGATACTCGAGAAAATGTCTGATATCGATAT
CGATGTCGATACGGCCTTATCGCTGAAACCGATATCTATGAACAAGAGGG
GACGAGGTAACTAACGGAGGGGCAGGGGGTGGATAAAGGGAGTTCCGTGT
GTGAAAACAGTATCGGAGTATCGCGTTCGAAATTTACGATACTGATCCGG
CCGGATCGGGATCGATACCGCGATATTTTTCTCAAATTCGATCTCGATCT
CCAGCACTACTATTCAGAGCCGGAGGCAACGCCTCCGGGCTACCGTTCTT
AACGTCTGCGCGCCGCGGATGATGGCCTGCTCTTTTCTGGTGACACGGTC
GCGTCAAGTGTGCCGCAGCTTGTTCTTTCTTGTCTTGCCCCTCTGCCAGT
GTTCTTCACACCATGCGGGTTTGCATCACGCCGATCTACGATCTGTGTAC
GCGTGTTTTGTCTGTGCGGGCGTGTGTTGATCTCCGAAACACCCCTTCTG
CGTTCTCCGGTAGGGTGCGGGGCAAGAAGAAGGCGGTGGACCCCGACGAT
GACGACTTGCCATGGGGGCACGAAGGTTTCGAGGTGCGTGTCTGTATCAT
GGCGTGCACTTGTGTACGGTTTGTCGATGGTGGGTGCTGCCCGCCGTTCG
GGAATGTAAACGCCCCCATACTATCCGTCTACGTGCGCGTTTCTCGTTGT
TCGTTTTTCCTGATTACTTGATCAAAAAAAGTATATTTGCACATCGTTTC
TATCGGCCGTCTGCGAGGGCTGGTTTCGAAATCAAATTCTGATTCTTCGG
GTTAAAAAATCAGCAAAAATCAGCGGTTTTTTTTTTTAGACAAAAAAATA
AATGTCCATTTTTTGGAAGTATTAAGAATATATATGTATATATGAATGTA
TATTCAGAAAATAATAATAACTAAATAACGTATTTGGTCCTCCATGCGTA
CAGACTAGCCTATGCTCTTTGACGGCAGGTCTCATGCTTTGCGGACGGCT
TTGTTGAACTCAAAATGGCGCACGATGGGCCGAGCAGACCAGGAGATCAT
AGCCTTTGGTGCGGACTACTGCACCACCGGTAGCACGTCTACCCCCGTCA
CCTCACCTAGCAAGAATTTTTATGGTGTCACGTTCATCACACCCCATCTC
ATCGTGCAGTCTATGATACACTGCTGTACGTCGAACGGGGTCGATATGAT
TTCAACGCTTTCGCGCCCGTTTTGTTTTTTGGTCGTTTGTGTGTGTTCTC
ATCTTCGCCGCTGGTTGTACCAGGAGGTACTCAGGGCCGAGGAGGAAGGA
CGGCCCATCGCTAGCTCGTCTGGATTTTGGTCGAACCCCACCGGCAAGGG
GGGTCGCAGCGGCGCCTGGCGGGGCGGCGGCGGCGGCGGCGGCTACGGCG
GGGACAGGGCTAGAGATCGTCGCGGTAGCGGAGGAGGCGGAAGAGGCGGG
GGCAGGCGGCGCGGCGAGCAGGACAACCAACGCGACACGGACAGCGCATA
CGGGGGCAGGAGCAGCAACAGGCAGAACAGCTACGAGAACGGTGACGGCG
GTGGTGATCGTGTCGATCGTGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:708086..713661+

>mRNA_P-littoralis_Contig18.162.1 ID=mRNA_P-littoralis_Contig18.162.1|Name=mRNA_P-littoralis_Contig18.162.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1194bp|location=Sequence derived from alignment at P-littoralis_Contig18:708086..713661+ (Pylaiella littoralis U1_48)
ATGTCGTCCAGGAGGAGGAAGATGTCGGAGGACGAGAGCAGCAGCGAGGA
ACAAGAAGAGATCGAGGTGCTGTCGGATCAAGAGGATCAAGATCATGATG
AGGAGCCAGACCCCGCCTCTATCCCCGTTCCACGGTCTTCCTTCTTCACA
CCCGACGGGGACAACCCGGAAGCAGTGCTATCGGCAACAGAGGCTGAGAG
CACCGATGCCGAGAGTGGAGCAATGGAAGGCGATGTTGGCGGTGACACGG
GAGGTGGGCAAGAGGAGGGGGAGGAAAGTGATGATTCCGAGGGCAGCAAG
GATACCGCCGCAGCATCGACCACGGCCACAGCGGGAGGAGAGGTGGTGGA
TGAAGGAAGCGAAGCGACGGAAGCTGAACCGCTCGACGAGCCAAGCGAGG
GTTCGACCACCGCATCGGAGGACGGAGTTGAGGCCGAAGGAGACGGGGGT
TGGGCTGCAGCTGAAGATGAAGAAGGGGAGACAGAGGAAGAAAGTGAGGA
AGCAAGGGAGGCTCGGCTAGCAGAATACGCAGCGGCAAAGGCGGAAGAAG
ACGCGATCAAACAGGAGCGCCGAGCTATTCGCGACAACCCGGCCGTGATT
CCCAAGCTGGGCGAGTTTTTTGTGCACGACGACCGTAGCAGCCGTGGCTC
CGGCAACAAAGCTGCTAGGGGGAAACAGCAGCAACAGCAGCAGCACCAGA
GAGGGGGCGAGGATGGCGGCGCAGGGTCCTCCGAGGGAGATGAGGAGGAG
GACTCCGGCCTCGGGCGGTGGCGCGCGGACGCCCTTCCTCTTGCCAAGAA
AAAAAACAGCGGGGAACAGTGGGTGCGGGGCAAGAAGAAGGCGGTGGACC
CCGACGATGACGACTTGCCATGGGGGCACGAAGGTTTCGAGGAGGTACTC
AGGGCCGAGGAGGAAGGACGGCCCATCGCTAGCTCGTCTGGATTTTGGTC
GAACCCCACCGGCAAGGGGGGTCGCAGCGGCGCCTGGCGGGGCGGCGGCG
GCGGCGGCGGCTACGGCGGGGACAGGGCTAGAGATCGTCGCGGTAGCGGA
GGAGGCGGAAGAGGCGGGGGCAGGCGGCGCGGCGAGCAGGACAACCAACG
CGACACGGACAGCGCATACGGGGGCAGGAGCAGCAACAGGCAGAACAGCT
ACGAGAACGGTGACGGCGGTGGTGATCGTGTCGATCGTGGTGGG
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