mRNA_P-littoralis_Contig1.86.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.86.4
Unique NamemRNA_P-littoralis_Contig1.86.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.86.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:526528..527400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size193
Hectar predicted targeting categorysignal peptide
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.648027-CDS-P-littoralis_Contig1:526528..5266361680789307.648027-CDS-P-littoralis_Contig1:526528..526636Pylaiella littoralis U1_48CDSP-littoralis_Contig1 526529..526636 -
1680789307.6587508-CDS-P-littoralis_Contig1:527316..5274001680789307.6587508-CDS-P-littoralis_Contig1:527316..527400Pylaiella littoralis U1_48CDSP-littoralis_Contig1 527317..527400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.86.4prot_P-littoralis_Contig1.86.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 526529..527400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.86.4

>prot_P-littoralis_Contig1.86.4 ID=prot_P-littoralis_Contig1.86.4|Name=mRNA_P-littoralis_Contig1.86.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
RQLLLYLLYALPSVRVRLCARAEFCFFTRCGMEVTALRDALGQHDEEHDS
GVSPSPTRMVRLFG
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mRNA from alignment at P-littoralis_Contig1:526528..527400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.86.4 ID=mRNA_P-littoralis_Contig1.86.4|Name=mRNA_P-littoralis_Contig1.86.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=873bp|location=Sequence derived from alignment at P-littoralis_Contig1:526528..527400- (Pylaiella littoralis U1_48)
CGCCAACTTCTGCTCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAG
ACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTTGTTGTCA
TGACCTCCTCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACT
ACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACCAAGGAGGTTCTTCT
CATACACCCGGTGCCGTCAGTACATGTCTCAGGCTCTCTTGGATAGAAGT
CCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAATGCGGAC
AAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGCAGCAGGTT
GAAAAACAATCGATAACGAAGTACTGCTGTAGAGGAGAAAAATCAACGCA
TGGCGTGGAATCAACCCTCCACCACCACCGCCCACCGCGCGCTACGCGAG
AGAACGCCTAGTGTCTGCGGGTGAACAGAACAAACTTAGGGTTGCAGAAG
ATTTCTCGGGTTCAACCTTGGTGCTGTGTTGTGTATCGGAGACAACTATT
TTTTGTAGTAAAACCGGACTCCAATTTCGCCGCCGCAGCTACCGTCGCTG
CTTCTCAGTGCTGCTGGCCGTGTTCCCTATCTATCTATGGTTTGGCGGCT
GCCTTCCTCTTCACGTTGGAATTAACATAGTTGTTCGACCTCCAGTACGA
AAAAGAAGGGCAGACTCATCCCGCCTTCACACGAATAAATTTGTTGCTGT
CTGTTTCCCCACAGAGGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCA
CTCGGACAACATGACGAAGAACATGACAGCGGTGTATCTCCTTCCCCAAC
CCGTATGGTTAGGTTGTTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:526528..527400-

>mRNA_P-littoralis_Contig1.86.4 ID=mRNA_P-littoralis_Contig1.86.4|Name=mRNA_P-littoralis_Contig1.86.4|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig1:526528..527400- (Pylaiella littoralis U1_48)
CGCCAACTTCTGCTCTACCTGCTGTACGCGCTACCATCAGTACGAGTGAG
ACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGAGGTGCGGCATGGAAG
TAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAGAACATGACAGC
GGTGTATCTCCTTCCCCAACCCGTATGGTTAGGTTGTTCGGG
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