mRNA_P-littoralis_Contig179.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.69.1
Unique NamemRNA_P-littoralis_Contig179.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:306179..306522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size344
Hectar predicted targeting categorysignal peptide
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.0957487-CDS-P-littoralis_Contig179:306178..3065201680789856.0957487-CDS-P-littoralis_Contig179:306178..306520Pylaiella littoralis U1_48CDSP-littoralis_Contig179 306179..306520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.1074848-UTR-P-littoralis_Contig179:306520..3065221680789856.1074848-UTR-P-littoralis_Contig179:306520..306522Pylaiella littoralis U1_48UTRP-littoralis_Contig179 306521..306522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.69.1prot_P-littoralis_Contig179.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 306179..306520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.69.1

>prot_P-littoralis_Contig179.69.1 ID=prot_P-littoralis_Contig179.69.1|Name=mRNA_P-littoralis_Contig179.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MRCVCFVAPFVLSFSVPLPLSRVFRGVREEQHTRIRKGCMHACLRVHVHT
SKRGTTGRYLHTYFEVYLEVRLYLPGIIHICYFLPPPQHLRPSSRFVCAV
SDPPVLPAPFSVS*
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mRNA from alignment at P-littoralis_Contig179:306179..306522-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.69.1 ID=mRNA_P-littoralis_Contig179.69.1|Name=mRNA_P-littoralis_Contig179.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=344bp|location=Sequence derived from alignment at P-littoralis_Contig179:306179..306522- (Pylaiella littoralis U1_48)
GGATGAGGTGCGTGTGTTTTGTTGCCCCGTTCGTTCTGTCTTTTTCTGTG
CCTCTACCGCTGTCTCGTGTTTTTCGTGGTGTGCGCGAGGAGCAACACAC
ACGGATAAGAAAAGGATGCATGCATGCATGCCTGCGTGTTCATGTTCATA
CTTCAAAACGGGGAACCACAGGTAGATATTTACACACATACTTCGAAGTA
TACTTGGAAGTACGTCTTTATTTACCTGGTATCATACATATTTGCTATTT
CCTCCCCCCGCCGCAACACTTAAGGCCGTCCTCGCGCTTTGTTTGCGCCG
TGAGTGACCCACCCGTTCTGCCGGCACCTTTTTCTGTCAGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:306179..306522-

>mRNA_P-littoralis_Contig179.69.1 ID=mRNA_P-littoralis_Contig179.69.1|Name=mRNA_P-littoralis_Contig179.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig179:306179..306522- (Pylaiella littoralis U1_48)
ATGAGGTGCGTGTGTTTTGTTGCCCCGTTCGTTCTGTCTTTTTCTGTGCC
TCTACCGCTGTCTCGTGTTTTTCGTGGTGTGCGCGAGGAGCAACACACAC
GGATAAGAAAAGGATGCATGCATGCATGCCTGCGTGTTCATGTTCATACT
TCAAAACGGGGAACCACAGGTAGATATTTACACACATACTTCGAAGTATA
CTTGGAAGTACGTCTTTATTTACCTGGTATCATACATATTTGCTATTTCC
TCCCCCCGCCGCAACACTTAAGGCCGTCCTCGCGCTTTGTTTGCGCCGTG
AGTGACCCACCCGTTCTGCCGGCACCTTTTTCTGTCAGTTGA
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