mRNA_P-littoralis_Contig178.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.49.1
Unique NamemRNA_P-littoralis_Contig178.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:286299..286698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.6666808-CDS-P-littoralis_Contig178:286298..2864261680789852.6666808-CDS-P-littoralis_Contig178:286298..286426Pylaiella littoralis U1_48CDSP-littoralis_Contig178 286299..286426 +
1680789852.67889-CDS-P-littoralis_Contig178:286516..2866971680789852.67889-CDS-P-littoralis_Contig178:286516..286697Pylaiella littoralis U1_48CDSP-littoralis_Contig178 286517..286697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.49.1prot_P-littoralis_Contig178.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 286299..286697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.49.1

>prot_P-littoralis_Contig178.49.1 ID=prot_P-littoralis_Contig178.49.1|Name=mRNA_P-littoralis_Contig178.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
KNRGERTPTRYLSRIFLPAVEHCLLRLLSVGPRQTLKREIKLRLRVCRIV
SAGPFSLRSERGITAASRRKTQVSPSAVVFPPFLHSSVSCVLSSRCGLGP
TSR
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mRNA from alignment at P-littoralis_Contig178:286299..286698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.49.1 ID=mRNA_P-littoralis_Contig178.49.1|Name=mRNA_P-littoralis_Contig178.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=400bp|location=Sequence derived from alignment at P-littoralis_Contig178:286299..286698+ (Pylaiella littoralis U1_48)
AAAAACCGGGGCGAGCGCACACCAACAAGGTACCTTTCACGGATTTTCCT
TCCTGCAGTTGAGCATTGTTTGTTAAGATTATTGTCCGTAGGACCACGAC
AAACATTAAAACGCGAAATTAAACTAAGGTTGAGGGTGTGTAGATCAGTT
GAGCATTGTTTGTTAAGATTATTGTCCGTAGGACCACGACAAACATTAAA
ACGCGAAATTAAACTAAGGTTGAGGGTGTGTAGAATCGTTTCTGCCGGCC
CTTTTAGTTTACGGTCGGAGAGGGGTATCACTGCAGCCAGCAGACGAAAA
ACGCAAGTTTCCCCAAGTGCTGTTGTTTTTCCCCCATTCCTCCATTCCTC
CGTTTCTTGCGTGCTTTCTAGTCGATGCGGTTTAGGCCCTACATCGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:286299..286698+

>mRNA_P-littoralis_Contig178.49.1 ID=mRNA_P-littoralis_Contig178.49.1|Name=mRNA_P-littoralis_Contig178.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig178:286299..286698+ (Pylaiella littoralis U1_48)
AAAAACCGGGGCGAGCGCACACCAACAAGGTACCTTTCACGGATTTTCCT
TCCTGCAGTTGAGCATTGTTTGTTAAGATTATTGTCCGTAGGACCACGAC
AAACATTAAAACGCGAAATTAAACTAAGGTTGAGGGTGTGTAGAATCGTT
TCTGCCGGCCCTTTTAGTTTACGGTCGGAGAGGGGTATCACTGCAGCCAG
CAGACGAAAAACGCAAGTTTCCCCAAGTGCTGTTGTTTTTCCCCCATTCC
TCCATTCCTCCGTTTCTTGCGTGCTTTCTAGTCGATGCGGTTTAGGCCCT
ACATCGCGG
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