mRNA_P-littoralis_Contig177.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig177.7.1
Unique NamemRNA_P-littoralis_Contig177.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig177.7.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 8.940e-67
Identity = 139/239 (58.16%), Postives = 153/239 (64.02%), Query Frame = 3 
Query:  684 DGGVALWLDMRTAVLPAAQTLKSLYDELRQREESLGRGPDDPDWSLSRVPNPVGALLYAAEPVERASEEMKALGAGGSGGGGLPCFRLSGTDETRIF-DVSSGDVVGVGFDPTGGEIGGNQAMEIVAAAQQGDSG------NLVFLQGARPSVWDDGGMGTVLQIAASACAEAGKTLVVTVRSVGQLHDAAMAAFAASQTQMLGARPASGKGTSEGRSPAMALLIEPTAELWEAGLLYL 1379
            D GVALWLDMRTAVLPAAQTLK+LY ELRQREE+LGR P+D DW+LSRVPNPVGALLYAAEP ERA+EEM ALG   +    LPCFRL GTD T +  DVSSG VVGV  DP G    G                       LVFL G RPSVW+ G MGTVL+IA+SACA AGKTLVVT   +G                 +G   A+  GT+    P MALLIEP  ELWEAGLLYL
Sbjct:  102 DSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAA---LPCFRLGGTDGTAVVVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVTTTVLG-----------------VGGTGAAEDGTTP---PPMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI8.940e-6758.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:48645..52934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1641
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Cds size1206
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789849.1611986-UTR-P-littoralis_Contig177:48644..489031680789849.1611986-UTR-P-littoralis_Contig177:48644..48903Pylaiella littoralis U1_48UTRP-littoralis_Contig177 48645..48903 -
1680789849.183476-UTR-P-littoralis_Contig177:50109..501901680789849.183476-UTR-P-littoralis_Contig177:50109..50190Pylaiella littoralis U1_48UTRP-littoralis_Contig177 50110..50190 -
1680789849.1935704-UTR-P-littoralis_Contig177:52839..529341680789849.1935704-UTR-P-littoralis_Contig177:52839..52934Pylaiella littoralis U1_48UTRP-littoralis_Contig177 52840..52934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789849.1738362-CDS-P-littoralis_Contig177:48903..501091680789849.1738362-CDS-P-littoralis_Contig177:48903..50109Pylaiella littoralis U1_48CDSP-littoralis_Contig177 48904..50109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.7.1prot_P-littoralis_Contig177.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig177 48904..50109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig177.7.1

>prot_P-littoralis_Contig177.7.1 ID=prot_P-littoralis_Contig177.7.1|Name=mRNA_P-littoralis_Contig177.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=402bp
MRLKAWHVLGLLSKASSSPIGYHDLQLIQTSAGCQSHRALESPTSTTRTR
AETSATAAQSGIALCTFVRPPLLFSSSFAPTAATSSVCGHNFAATTRCYY
RPQHGRQPNTPSTWLSPRFKSSRVGGGTRNIQDASSAFVVMSGRNPTENA
NNSPPIGASSSGGGGGEGGDGGVALWLDMRTAVLPAAQTLKSLYDELRQR
EESLGRGPDDPDWSLSRVPNPVGALLYAAEPVERASEEMKALGAGGSGGG
GLPCFRLSGTDETRIFDVSSGDVVGVGFDPTGGEIGGNQAMEIVAAAQQG
DSGNLVFLQGARPSVWDDGGMGTVLQIAASACAEAGKTLVVTVRSVGQLH
DAAMAAFAASQTQMLGARPASGKGTSEGRSPAMALLIEPTAELWEAGLLY
L*
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mRNA from alignment at P-littoralis_Contig177:48645..52934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig177.7.1 ID=mRNA_P-littoralis_Contig177.7.1|Name=mRNA_P-littoralis_Contig177.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4290bp|location=Sequence derived from alignment at P-littoralis_Contig177:48645..52934- (Pylaiella littoralis U1_48)
CACGAACTGAGTAGCCTGCCCACCCACGACAAGGCGAGACGGCGTAACGC
AAGGATCGAGGGACGGTGATACTCGAGAATTTTTCGGTATTTCAGGCAAG
TATTGGTTTGCATGTTTTGCATTGAACAAACCAAACGTATCATGAAGACA
TCATGCCCAGAAGAGACGGATGCTTGTCTTGTACTGCTGCGCATCAAAAA
GAGGGAACTTTTTTTCCACCGTCCACAGCATTGCTGCAATCTGCTCTATA
GTTAAGTATAGTTTCGAGGTGGTACTTGATTTGTCAGCAGGATATTTTTT
TGTGTGCGATGACAGAACCCTCTGTCTTCTACAAATGTACTTCTGAGCGC
AACAAGTTTTTCAACGCTCGACGTATACATAGACTACACTTCGTACAAAG
CAAATGCCGCCGTTGTGGTACACGTACTGAGAAGGAGGAGGGTGCTTGCC
TTGCGCAAAGAAGCGATGATCGCCCTTTTCCATTGGTATCCTGGCCGGTG
CTTTTGATCAGAGTTTGAGCTGCAAGTTCTTCGTTGTCAAACGTATATAA
TACACAACATGCATCTTATTTATGCTTCGAAGTGTTACTACAATAATAGC
TGTACGTCACCTGTTTTTCACCTGTTTTTGCAGAGACAGGAGGAGGAGAG
AAGCGGAAGGAATGCTCGCGCCAAAATCCGCGGCCGTGGTCCCCTCGTTG
TGCCCTTCTGTTGTGGTATATATGACTCCCAGCAGGGTGGTCTTACCGTG
CCCACAAGACTACGATCGTCGATAAGGGTTATTTTTAATATCCAAAGAAT
ATTCTTGGGATCCTTTTTTGTTTATCCCTGAAACGTGGAACCGCAGACAA
TAATAATTATAGAAATTCGGTCTTTCCCCGATTCGAGGAAATGAGTAGGT
GAGACAATATCGCGCGAAGATTCAATTTCATGGTCCTTTTTTTTTACCCA
GAAACAAAGGTGCGTACAGCAGAAACACATGCCAAACCCGCCCGAGCGCA
GTAACAGCAGCAGCAGTGTAGATAGTGCACTAAAGACAGGTTACCCGAGA
TAAATACTCTGGCAAGCGAATCCAACCCTCCCTGTTCTGCACATTCCAGT
AGGTGTGGCGATAGTTTGGCCAAACGGTTACAGCAGTATCATGGAGATAA
GAAGATATCGGAATATCTGTTTCGCCGCTTGTCTGCCTCGTTTGTTGTTG
CTACATCAACGCTGGCAACCTTTTTCAAGCTAGCGAAGAAGCTGCGATGA
CCGCGTGGCGGGAGCGGCGTCGCGTCGTGAGCCACTACCATTTACACCTC
CGTTTTGAAAGAACAGGACTTCGGAGGCCTCGTTGATCTACTGTGATGCT
GTCTGATTCTTGAATCGAAGTTTTCGACTGTAAAATAAAAACACCACCAG
CGCGATTCGGGAGCGCCTCACAGCACACGCCCTTTTCTTGCAACCTCGTT
TTAGCCTCACACGGGCTACGACAACCGCGTAGCGGCAACGGCGCCGAGGG
CCACCATCATATAGACCTGCTTCGAAAGAAGCAGGACTTGGGAGGTGCTC
CATCTCGGAAGTTGTGTAGTGTACCTTGTTGAATTTTGTAACGAAAAGCA
CCATCGCCTCTTCGATTGAACCGAAGGTATTGCACGTTTATGTTCCATGA
AACCACTATGTAGACGGACCCCAAGGATATGTATTTTGTGATTAAAAAGA
CCTTGAGTGTGGCGTATTTCGTCGATTGTTGCCTGTTCACTGCGTGCAAC
GTGCGGGTCTAGTCATTTTGACAGCACTTGGGTATCATTTACCTGGTATG
TGTTATATTTTTCCGATTACCGGACCTGTTGTATGTTGCAAGCAGCACTC
CTGACAGCACTGCCGCAGTCTGCAGCCACACGTGGTTATTTACTTGTAGT
GACACGGGGGGAGACTGAACACGATTTTGAAGTCGAATGGATAAGTGAGG
GGTGGTCGTGTTCGTTCGGTTTGCACACTGCACACCACTAGTATAAGGCG
TGCGGTACCTTCTCCGGCCTCTCGTGCTTTCTCGTGTCTTCCCAGGGCTC
AGCACTTTCGTGACCACGAGCTAGATCTCGGCGGTGAGTTCATGTCACAA
CCAACAACAATACCAACAACAAACACTGCTGCATCGATCAATTTGTACTT
CGAAGCGCACGGACTTTCGAGAATGACTCACTGCTGAGCCTTCCTGGGGC
CACATTACAAAATACCCGTAGGTTACGGAAGATACCACCATCCCCTGGAC
CGATGTTTAAATCTAGGTTGTCGGCACTCCAGAGCAGATCAAATGCCGGC
GAAAGAGTGTTGGGGCCGGCGGGGCGACGTTAGAACCATTTCGTCGTGAG
CTTTCGCAAAACTTGTCGTTTGATGTTGGCGCCCCGTTTTGGCACCCTCT
TCATCGAGGTAATCGAGCCTTGAAAATTAGGTGTATGGGGGTGGTATCTT
ATAATACCCCCGGCAGTTGAAAGCAAGTGCCGCAGAAAGACGAGGTGGTT
GCCCAAAGAGAAAAGTGCTCCTGCACGACCACAACTCAACCAGAACGGCT
CAAGGGAGGAGTACCAAACTGGACTGGCAATATACTGTATGGGAATTACC
AAAAGCGTACAATAATCCAAACGGATTTGAGGGGGTTCACGGCCGTGATG
GCCAAGCATGGCGCCTATATCTGCTGCAGCTTATTTTTTTCTGTTTCGCT
GCTGGGCATCTTCTCACTATCGTACCCACCCCTGTGTTTGACAGCGCTGC
TGAGCTACGGGGTAAACCAGACCCAACGGTGTCGCCTGGAGACTTAGCTG
GAGCACCTACTAACCTCCCGCAAGGATGAGGCTCAAAGCATGGCACGTTC
TTGGTTTACTATCGAAGGCGTCGTCATCGCCCATCGGTTATCATGATCTC
CAATTGATCCAGACTTCAGCGGGGTGCCAATCTCATCGTGCACTAGAATC
CCCAACCTCAACAACAAGAACAAGAGCAGAAACGTCAGCGACAGCAGCAC
AAAGCGGAATCGCCTTATGCACCTTTGTCCGGCCTCCTCTGTTGTTCTCC
TCCTCCTTCGCACCAACCGCAGCCACCTCGTCGGTTTGTGGTCACAACTT
CGCCGCGACAACACGTTGTTACTACCGCCCCCAACACGGCCGCCAACCAA
ATACTCCGAGTACGTGGCTATCACCGCGATTCAAATCCTCACGTGTCGGC
GGCGGCACGCGAAATATTCAAGATGCCTCCTCTGCATTTGTTGTGATGAG
CGGCAGAAATCCTACGGAAAACGCCAACAACAGTCCCCCGATAGGAGCAT
CATCGTCTGGCGGCGGCGGCGGCGAAGGTGGTGATGGCGGCGTCGCCCTG
TGGCTGGACATGCGCACCGCCGTGCTCCCGGCTGCCCAGACCCTCAAATC
CTTGTACGACGAGCTCCGACAGAGAGAGGAATCGCTCGGGCGCGGGCCCG
ACGATCCGGACTGGTCGCTCAGCCGCGTGCCAAACCCTGTCGGGGCGTTG
CTCTACGCCGCAGAGCCGGTGGAAAGAGCGTCGGAAGAGATGAAAGCGCT
TGGCGCTGGCGGCAGCGGCGGCGGGGGACTTCCGTGCTTCCGACTGAGCG
GCACCGATGAGACCAGAATCTTCGACGTCTCGAGCGGGGACGTCGTGGGA
GTTGGGTTCGACCCCACCGGTGGCGAGATTGGGGGAAATCAGGCCATGGA
GATTGTGGCGGCGGCTCAACAGGGTGACTCGGGCAACCTAGTGTTCTTGC
AAGGAGCGCGACCGTCCGTGTGGGATGACGGGGGCATGGGGACCGTTCTG
CAGATCGCTGCGAGCGCCTGCGCCGAGGCGGGGAAGACACTCGTGGTGAC
TGTTCGGAGCGTGGGGCAACTACATGACGCTGCCATGGCGGCTTTTGCGG
CGTCGCAGACGCAAATGTTAGGGGCTCGCCCGGCCAGCGGGAAAGGGACC
AGCGAGGGCAGGAGTCCTGCGATGGCTTTACTGATTGAGCCCACGGCTGA
ACTGTGGGAAGCCGGCCTCTTGTACCTGTGATGCTTATGTTATCGTGTGT
TGCTGCTGCCGCTATGGCATTGTCAATGAAGGCATTTTCTGATTTTGGGG
AGCGAGGCTGCTCTCTGGATACTTCACATTAGTAGGATAGCTTGAGTCAC
GCACGCCGCCCCTCATCGAGAGCATGAACTAGGTTGCCGTACCTGCGAAA
TGCATGCCCGGTATCACATATGTACGCTATCCTGACGATCGTGCCAGGCG
GCACGATTTCAAGTGATGGAAAGCTTTTCAAGTTTTAAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig177:48645..52934-

>mRNA_P-littoralis_Contig177.7.1 ID=mRNA_P-littoralis_Contig177.7.1|Name=mRNA_P-littoralis_Contig177.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1206bp|location=Sequence derived from alignment at P-littoralis_Contig177:48645..52934- (Pylaiella littoralis U1_48)
ATGAGGCTCAAAGCATGGCACGTTCTTGGTTTACTATCGAAGGCGTCGTC
ATCGCCCATCGGTTATCATGATCTCCAATTGATCCAGACTTCAGCGGGGT
GCCAATCTCATCGTGCACTAGAATCCCCAACCTCAACAACAAGAACAAGA
GCAGAAACGTCAGCGACAGCAGCACAAAGCGGAATCGCCTTATGCACCTT
TGTCCGGCCTCCTCTGTTGTTCTCCTCCTCCTTCGCACCAACCGCAGCCA
CCTCGTCGGTTTGTGGTCACAACTTCGCCGCGACAACACGTTGTTACTAC
CGCCCCCAACACGGCCGCCAACCAAATACTCCGAGTACGTGGCTATCACC
GCGATTCAAATCCTCACGTGTCGGCGGCGGCACGCGAAATATTCAAGATG
CCTCCTCTGCATTTGTTGTGATGAGCGGCAGAAATCCTACGGAAAACGCC
AACAACAGTCCCCCGATAGGAGCATCATCGTCTGGCGGCGGCGGCGGCGA
AGGTGGTGATGGCGGCGTCGCCCTGTGGCTGGACATGCGCACCGCCGTGC
TCCCGGCTGCCCAGACCCTCAAATCCTTGTACGACGAGCTCCGACAGAGA
GAGGAATCGCTCGGGCGCGGGCCCGACGATCCGGACTGGTCGCTCAGCCG
CGTGCCAAACCCTGTCGGGGCGTTGCTCTACGCCGCAGAGCCGGTGGAAA
GAGCGTCGGAAGAGATGAAAGCGCTTGGCGCTGGCGGCAGCGGCGGCGGG
GGACTTCCGTGCTTCCGACTGAGCGGCACCGATGAGACCAGAATCTTCGA
CGTCTCGAGCGGGGACGTCGTGGGAGTTGGGTTCGACCCCACCGGTGGCG
AGATTGGGGGAAATCAGGCCATGGAGATTGTGGCGGCGGCTCAACAGGGT
GACTCGGGCAACCTAGTGTTCTTGCAAGGAGCGCGACCGTCCGTGTGGGA
TGACGGGGGCATGGGGACCGTTCTGCAGATCGCTGCGAGCGCCTGCGCCG
AGGCGGGGAAGACACTCGTGGTGACTGTTCGGAGCGTGGGGCAACTACAT
GACGCTGCCATGGCGGCTTTTGCGGCGTCGCAGACGCAAATGTTAGGGGC
TCGCCCGGCCAGCGGGAAAGGGACCAGCGAGGGCAGGAGTCCTGCGATGG
CTTTACTGATTGAGCCCACGGCTGAACTGTGGGAAGCCGGCCTCTTGTAC
CTGTGA
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