mRNA_P-littoralis_Contig172.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.16.1
Unique NamemRNA_P-littoralis_Contig172.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.780e-12
Identity = 54/89 (60.67%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            VGGI DCG NAV+ QP S  P   P+  V  CGRCG+N H A+ C APRRFEG XXXXXXXXXXXXXX  S      HPH +V T++GA
Sbjct:  364 VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEGTXXXXXXXXXXXXXXAKSNR----HPHLNVVTSAGA 448
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.520e-11
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            VGGI DCG NAV+ QP S  P   P+  V  CGRC ++GH A+ C APRRFEG XXXXXXXXXXXXXXX S      HPH +V T++GA
Sbjct:  478 VGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 562
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-10
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEG 348
            VGGI DCG NAV+ QP S  P   P+  V  C RCG++GH A+ C APRRFEG
Sbjct:  234 VGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.680e-8
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            VGGI DCG NAV+ QP S  P   P+  V  CGR     H A+ C APRRFEG XXXXXXXXXXXXXXX S      HPH +V T++GA
Sbjct:  364 VGGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 448
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7
Identity = 51/89 (57.30%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            VGG+ DCG NAV  QP S  P   P+  V  CGR     H A+ C APRRFEG XXXXXXXXXXXXXXX S      HPH +V T++GA
Sbjct:  436 VGGVYDCGSNAVSHQPESLPPPGTPMGTVHRCGRXXXXXHHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 520
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BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.590e-7
Identity = 38/101 (37.62%), Postives = 46/101 (45.54%), Query Frame = 1 
Query:  154 QRPSSSGEFQLEVGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            Q+P+  G     VGGI DCG NAV+ QP SP P   P+  V  C         A+ C APRRFEG                 S      HPH +V T++GA
Sbjct:  115 QQPAMDG-----VGGIYDCGCNAVYHQPESPPPPGAPMGTVHRCXXXXXXXXXAIDCAAPRRFEGTSGACDQYGHMWRNCAKSNR----HPHLNVVTSAGA 206
[Close]
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.230e-6
Identity = 50/89 (56.18%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  190 VGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGKNGHMAMHCTAPRRFEGXXXXXXXXXXXXXXXXXSRGFGAGHPHDSVETTSGA 456
            VGGI DCG +AV+ QP S  P   P+  V  CGR       A+ C APRRFEG XXXXXXXXXXXXXXX S      HPH +V T++GA
Sbjct:  436 VGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEGTXXXXXXXXXXXXXXXKSNR----HPHLNVVTSAGA 520
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JBS7_9PHAE3.780e-1260.67CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYB5_9PHAE2.520e-1160.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV09_9PHAE1.590e-1058.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU47_9PHAE2.680e-858.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN41_9PHAE1.030e-757.30Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBM3_9PHAE4.590e-737.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE1.230e-656.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:89500..89968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789832.428799-CDS-P-littoralis_Contig172:89499..899671680789832.428799-CDS-P-littoralis_Contig172:89499..89967Pylaiella littoralis U1_48CDSP-littoralis_Contig172 89500..89967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.16.1prot_P-littoralis_Contig172.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 89500..89967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.16.1

>prot_P-littoralis_Contig172.16.1 ID=prot_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
QQRRGGRAGRHRESDRVTAGNSRGQRQRQQWSNRGGPPQQPQQQQQQHCV
FQRPSSSGEFQLEVGGICDCGQNAVFSQPASPSPASVPIRWVPVCGRCGK
NGHMAMHCTAPRRFEGNCATCGEYGHVSRLCITSRGFGAGHPHDSVETTS
GASNNA
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mRNA from alignment at P-littoralis_Contig172:89500..89968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.16.1 ID=mRNA_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=469bp|location=Sequence derived from alignment at P-littoralis_Contig172:89500..89968+ (Pylaiella littoralis U1_48)
CAGCAGCGTCGAGGAGGTAGGGCCGGGCGTCACCGGGAAAGCGATCGCGT
GACAGCTGGTAACAGCCGTGGACAGCGGCAGCGGCAGCAATGGTCAAATA
GGGGTGGACCCCCACAACAGCCTCAACAACAACAGCAGCAGCACTGCGTT
TTTCAACGGCCTTCCTCTTCCGGTGAATTCCAGCTTGAAGTCGGAGGAAT
TTGCGACTGCGGGCAGAATGCCGTGTTTAGTCAACCGGCTTCCCCAAGTC
CGGCGAGCGTGCCAATCAGGTGGGTACCTGTTTGTGGGCGATGCGGTAAG
AACGGGCATATGGCCATGCATTGCACTGCACCGCGGCGGTTTGAGGGCAA
CTGCGCCACCTGCGGCGAGTACGGTCACGTATCTCGTCTTTGCATCACTT
CGCGTGGTTTTGGGGCAGGACACCCACATGACAGTGTCGAAACTACATCC
GGCGCGAGCAACAACGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:89500..89968+

>mRNA_P-littoralis_Contig172.16.1 ID=mRNA_P-littoralis_Contig172.16.1|Name=mRNA_P-littoralis_Contig172.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig172:89500..89968+ (Pylaiella littoralis U1_48)
CAGCAGCGTCGAGGAGGTAGGGCCGGGCGTCACCGGGAAAGCGATCGCGT
GACAGCTGGTAACAGCCGTGGACAGCGGCAGCGGCAGCAATGGTCAAATA
GGGGTGGACCCCCACAACAGCCTCAACAACAACAGCAGCAGCACTGCGTT
TTTCAACGGCCTTCCTCTTCCGGTGAATTCCAGCTTGAAGTCGGAGGAAT
TTGCGACTGCGGGCAGAATGCCGTGTTTAGTCAACCGGCTTCCCCAAGTC
CGGCGAGCGTGCCAATCAGGTGGGTACCTGTTTGTGGGCGATGCGGTAAG
AACGGGCATATGGCCATGCATTGCACTGCACCGCGGCGGTTTGAGGGCAA
CTGCGCCACCTGCGGCGAGTACGGTCACGTATCTCGTCTTTGCATCACTT
CGCGTGGTTTTGGGGCAGGACACCCACATGACAGTGTCGAAACTACATCC
GGCGCGAGCAACAACGCG
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