mRNA_P-littoralis_Contig172.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.42.1
Unique NamemRNA_P-littoralis_Contig172.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:201986..202472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categorysignal anchor
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.6693532-UTR-P-littoralis_Contig172:201985..2020571680789831.6693532-UTR-P-littoralis_Contig172:201985..202057Pylaiella littoralis U1_48UTRP-littoralis_Contig172 201986..202057 -
1680789831.6926162-UTR-P-littoralis_Contig172:202390..2024721680789831.6926162-UTR-P-littoralis_Contig172:202390..202472Pylaiella littoralis U1_48UTRP-littoralis_Contig172 202391..202472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.6795683-CDS-P-littoralis_Contig172:202057..2023901680789831.6795683-CDS-P-littoralis_Contig172:202057..202390Pylaiella littoralis U1_48CDSP-littoralis_Contig172 202058..202390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.42.1prot_P-littoralis_Contig172.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 202058..202390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.42.1

>prot_P-littoralis_Contig172.42.1 ID=prot_P-littoralis_Contig172.42.1|Name=mRNA_P-littoralis_Contig172.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MLLCVFRGMLYLDDGHTPRVVGFPPLTILLFMLYWLASFSPLGRILLMPN
FDVCRPPYSYLCLSSCSKLLLNRLFVRDREILMAWSCFACTGSYVMCCFS
VKRNVHFLFM*
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mRNA from alignment at P-littoralis_Contig172:201986..202472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.42.1 ID=mRNA_P-littoralis_Contig172.42.1|Name=mRNA_P-littoralis_Contig172.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=487bp|location=Sequence derived from alignment at P-littoralis_Contig172:201986..202472- (Pylaiella littoralis U1_48)
ACTACTGAAGAGCACGAATTGCGTTTGGTTTGTGTTTTCGTCAGATTTTA
CTTTGTGCGCGACTGCCCCGTAGCCTGGAGAAATGCTCCTCTGCGTGTTC
CGGGGAATGTTGTACCTAGACGATGGTCACACCCCGCGGGTTGTGGGTTT
CCCCCCCCTAACGATTCTATTGTTCATGCTTTATTGGCTGGCGTCATTCT
CGCCTCTCGGTAGGATCTTGTTGATGCCCAATTTTGACGTCTGTCGGCCC
CCCTACTCTTATCTCTGTCTTTCCTCCTGCAGTAAACTTCTTCTGAATAG
ACTTTTTGTTCGTGATCGAGAAATATTGATGGCTTGGTCTTGTTTTGCCT
GTACAGGTTCATATGTAATGTGTTGTTTCAGTGTAAAGCGAAATGTACAC
TTTTTGTTCATGTGAAGACCACAATAGTTGCAAGTTGTTGGGCGGAGAGT
GGGGGACGGCATATGAATACAGTAGTACATACAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:201986..202472-

>mRNA_P-littoralis_Contig172.42.1 ID=mRNA_P-littoralis_Contig172.42.1|Name=mRNA_P-littoralis_Contig172.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig172:201986..202472- (Pylaiella littoralis U1_48)
ATGCTCCTCTGCGTGTTCCGGGGAATGTTGTACCTAGACGATGGTCACAC
CCCGCGGGTTGTGGGTTTCCCCCCCCTAACGATTCTATTGTTCATGCTTT
ATTGGCTGGCGTCATTCTCGCCTCTCGGTAGGATCTTGTTGATGCCCAAT
TTTGACGTCTGTCGGCCCCCCTACTCTTATCTCTGTCTTTCCTCCTGCAG
TAAACTTCTTCTGAATAGACTTTTTGTTCGTGATCGAGAAATATTGATGG
CTTGGTCTTGTTTTGCCTGTACAGGTTCATATGTAATGTGTTGTTTCAGT
GTAAAGCGAAATGTACACTTTTTGTTCATGTGA
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