mRNA_P-littoralis_Contig172.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.40.1
Unique NamemRNA_P-littoralis_Contig172.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:190496..198249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categoryother localisation
Exons5
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.40.1prot_P-littoralis_Contig172.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 194724..198208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.4708328-UTR-P-littoralis_Contig172:190495..1905361680789831.4708328-UTR-P-littoralis_Contig172:190495..190536Pylaiella littoralis U1_48UTRP-littoralis_Contig172 190496..190536 -
1680789831.482382-UTR-P-littoralis_Contig172:194699..1947231680789831.482382-UTR-P-littoralis_Contig172:194699..194723Pylaiella littoralis U1_48UTRP-littoralis_Contig172 194700..194723 -
1680789831.553805-UTR-P-littoralis_Contig172:198208..1982491680789831.553805-UTR-P-littoralis_Contig172:198208..198249Pylaiella littoralis U1_48UTRP-littoralis_Contig172 198209..198249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.4932413-CDS-P-littoralis_Contig172:194723..1947711680789831.4932413-CDS-P-littoralis_Contig172:194723..194771Pylaiella littoralis U1_48CDSP-littoralis_Contig172 194724..194771 -
1680789831.5136712-CDS-P-littoralis_Contig172:195471..1955261680789831.5136712-CDS-P-littoralis_Contig172:195471..195526Pylaiella littoralis U1_48CDSP-littoralis_Contig172 195472..195526 -
1680789831.5268483-CDS-P-littoralis_Contig172:197214..1972861680789831.5268483-CDS-P-littoralis_Contig172:197214..197286Pylaiella littoralis U1_48CDSP-littoralis_Contig172 197215..197286 -
1680789831.5417736-CDS-P-littoralis_Contig172:197873..1982081680789831.5417736-CDS-P-littoralis_Contig172:197873..198208Pylaiella littoralis U1_48CDSP-littoralis_Contig172 197874..198208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.40.1

>prot_P-littoralis_Contig172.40.1 ID=prot_P-littoralis_Contig172.40.1|Name=mRNA_P-littoralis_Contig172.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MVLSRYMYGLTNLAFPGANDDATFEFQSGVHEHWSCARHPFVIFCVQPYL
VAMAVTDRQAFPSDCLILSFTCFTHVGYRVHPAITSMRHHSTGAGEPDSA
PGARSMPEQARRPDPAGAGKLGGFGKAETLGQQPERRDSAGARETEGTRA
TMPQARSRRRSGNSWFCRR*
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mRNA from alignment at P-littoralis_Contig172:190496..198249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.40.1 ID=mRNA_P-littoralis_Contig172.40.1|Name=mRNA_P-littoralis_Contig172.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7754bp|location=Sequence derived from alignment at P-littoralis_Contig172:190496..198249- (Pylaiella littoralis U1_48)
TCGGACGGCGAGTGAAACTCTCAGGAGGACATGCAAGAAGGATGGTATTA
TCGCGGTACATGTATGGCCTGACGAACCTCGCTTTCCCTGGTGCAAATGA
CGACGCCACATTCGAGTTTCAGTCCGGCGTACACGAACATTGGAGTTGTG
CGCGGCATCCCTTCGTCATTTTTTGTGTGCAGCCGTACCTTGTTGCCATG
GCCGTAACAGACCGACAAGCCTTCCCTTCCGACTGTCTGATTCTCTCATT
TACATGTTTTACGCATGTGGGTTATCGGGTGCATCCTGCCATCACCTCCA
TGAGGCACCATTCCACCGGGGCTGGGGAGCCTGACAGCGCTCCAGGAGCT
AGATCTATGCCGGAACAAGCTCGCAGGTGAGACATGGCAGTGATACGAGC
GTACGACAAAGTTGGATGCTGGCATCGCAAGAAATTCTCTTAGCCTGGCC
CCGCTGGTACGCATCGGCAGCCTTTGATTTTTTTTATTTGTTGTTGTCTA
TCGTTGAGCACGTTTTGCGGTGGCCACCTCTTTTCGCGTCTCGCGCTGGT
TTTTGACTGATGTTTTAGTCTCCCTTAAGTCAGTCCAGTGGTCACGCGCT
CGAACCTCTGTGTGCGGCAGTGAGTACTGCGGAAGAAAGTGGCTGCGCTC
TGTCCGCGGGCAAGTGGGTAGTTTTGATTCTGAGGTTGACTAGGTCATTC
TCAGGAGACGAGCGGTGGCGCAACCACGACGATCGGTGAAGTTTTATTTA
CAGAGGGGCAGCGCGAGGGGTATAATCGATCTGAATACAGGATCGTTCAG
AATACGCGGGGTTTTTGCTGTATGAGTGGCCAGAGGCACGAGAAAATGCG
GACGTCAGATATGTACCGCGCGGGCCGACAAGGTGCACGCACCATTTGAT
CGAGCTGATCCCCATGCCTAACCTATCTCGAGTTGTTTAAAGTAAAACTT
CCGCCCTCGTGAGGCCCGATCCCGCCGGCGCTGGGAAACTTGGTGGCTTT
GGTAAAGCTGAAACTCTGGGACAACAACCTGAGCGGTGAGTAATCGAGGG
GCGGCCATGTTTTGCCCAATTACGAAAACCTGACCAAGCTATCGTCCAGT
GACTGCTGCGCTTGTGTACATTCCCCTACCCATGTCAAGGCAGTGGTTTA
CGCAAATATCTCAGCCTTTGTTTTTCAAATGATATGGATTGCCTGTTGTT
GAGGATTATTTGAAACCTGGCAATGCAGGCGCAATTCCGTCGAGACCGGC
TGGCATTAAAGTATTCGATAACCGTTGTTTTTGCCAGTCCAGCCTGCAAA
CACCGATTGGTGTGGAAAATGTGAACAACGTACTTCGACTTGCAGAAAGT
ATACCTCGTATTCCAATACTCAACGTTTTCGTCTTAGGATCCTGGTATCG
TATTAATTCCGGGGGAGAACCGACATTTATTGTGTGTGTACCACGTGCTG
CGTGGAGGGATGGCTGAAATAGAATAAGTGTATTTTTCGATGCCGACAGG
CTTGCGAGGAGTTAGGAGAAGGGTTGGTAATTTGTTCGTTTTTGAGGCGT
TCAAGGATACATAATTTACCGAGCCGCTGGTCCAAGTGGTATGATTGTTT
TTCCTCGGTGTCTCAGCAACATTTCCAGCAACGCCGTCATGAGAGCTGGA
TGAAAAGGCCCACAAACGGCAGATTCGAGCCACGTTTACTGTTGGTGTCC
ACGGGGCTATGTGAGAGAGTGATTCTCGAATACATTAATCTCATCAACTT
TTACGTTGCCGTCGGATCGCCATGGAAACATTGCATTATTCTGTTCCAAA
ACGTACATTGGACTGGAATCTGTGGTTACCGTATTTGTGCCGATTTTCGT
CTAAACCGAAAGCACTTACTCATCAGATAGACCGACCTTCATCAGATGGA
TCGACACAAGCGTTTCCACGAAGTGACCTGGGATACTTGGCGGTTCGATT
CTACTGGATACGTATGCGGTATACTCCAGCTTCTGTGTTCCCCCGAGACA
GTAATGCTCCTCTCTTTGCGCCTGGCTGAATTGTTCCAGTGCCTGCGACA
GAACTGCACTCTTTTTTTCGAAAGGGTACCGCAAAGAACCGGCTAGTCGC
CCCTCGTGGCGATGTTCAACGCTTTAAAGAAAAAAACAGAAATATGAGAA
CCTGGGCACTGCTGTGTGTGCCCGGGGAGTTTGTCTCGTATGCAGCCGGG
CCGTATTTTGACACATGACACCAATCCAAAGCATCCAGAGGGGCGCCTCG
AAAAACGTGTATCATATGATGCGGCGGAAAGAGGTCCCCCCCAGGGCGAT
AGGACCTCGCGCATTCTGTCTCTCAACATATAACACACACACACACAAAT
AAAAAACCGACGGAAGGTCACGTCGCGTACCGATAGCAGCATACAGACAT
CGCAGTGCATCCTCAACGCCAATGGCAGGAAAGACGGCATGTAAGGCGAC
TCGCGCCCGGCCCCCGCTCGGAAAGACGTGTCAGCCTCTCCAAGACGTTG
AGCCAGAGCCTGACCCCACTGGCTGCGTCGATCCGTTGGTTTGAGAATCC
CGCAACGGCCGGGCATCGCGTGTGTAGTATTTTTCTGGCCACACACAGCC
TTGAATATGAATGTTGACGTACCGCACCGATAGGCGTGTTACCAGTATTT
ACCTGCTGACTTCCTTCTTCGCATTTTGAATGCATATCTGCTTTGGGTGT
TTACCACCACCTTTTTATCTCAGGCGTGATTCCGCGGGAGCTAGGGAGAC
TGAAGGCACTCGAGCAACTATGCCTCAGGTGGAACAAACTCAGCGGTGGG
CAGTTGCAGTGAGCGTTGTTTGTCACAAACCGACAAGCAAGGGAAGTATT
CCAACTTCATTGCTTGCACGAAATCCCCTTCGAGTTGTGTTGATCTGGTC
TCGTTGGCACTTTAAGGGAGACACGAAATGCTTCGCTTGGGTCTTGCCCC
GTGGAATATTTGCGGCTGCCGTCTCTCCCACAGCTTGGGGTGTTATGCTC
ATCTGGTCGGATGGCATGTTCTCAGCATACACCGGTATTCACGGGCATTA
ACCCCGTGTGCGTATTGAAAAGGAAAGGTAATAAGGAACAACTATCGCTA
TCTGCGTAGGGTAAAAACAAAATTCCAAGACGTGTCGCTACATCATTTCA
TTTATGCCCTCTGGGGGGGGGGTGGCTCGGTGGAATGTTGCCCCCATTGA
TCTAGATCCAGGGGGTCCCTGTCAGAGTCGGGCGCGTCGCTTCCTTGGCG
CTGGTCTAGTCTGTGTGTGTACTTGTTCAGTGTTACCGGTTCGTCCCCTG
GTATTCTGAATCAGAATCATCAGCCGACACGGCTACCATGGTCAGGACTT
CTTGCCGTGGTGCCCAAGAACCAAGAGCCTCGTAGGCACCAGGCGAAGCA
GGGGTGCCGTCTGAGTGCGCCGTGCTTCATGCCTAACCCATCTTGTTTCG
CCCGCTTGGCGTGGACCTCGTCCTGCAGGCCCGATCCCGCCGGCGCTCGG
GGAACTCGTGGTTTTGCAGACGCTGAGGCTCAGGATCAATGACCTCCGTG
GTGAGTGAGGAAGGGCCGCCAACTTTCACGTTCGGATCCACGACGCACGT
ACAAGCTAGATTGATCAGTGTTAACACTCTGTTAGCGGGTCTTCGTTCCT
GAGGTATTTCACGGCCTCTGATTGGTCAACCTCATGTGTACCTGAAGCAC
ACCGCGTTCTGTCCTGCGGACCAGCGGCGTTCCACGACCGCGGCGCAGCC
ACGGTTGTGCTCGCTACGGCCCTCCTCGGTCGGTCGTGAGGGTTAGGGTT
AGGGTTAGTGTTGGGGTGGGTTGGGTTGGGGTGGGTAGGTGTGTATGTCA
TGCTTAGTGTGCTGAGCTGAATTTTGAACTTTCTTTCAGACCTAAAGCTC
CTCTAACAGCGTGTCAACAGACTTGTGTTGTGCGCCATGCTTTGTTTCCT
TCGTTTTCGGGGCGACACGAGCTCAGCCTTTTCGCCCCGACGGGCATTGT
TACCCTTTATCCAGAGATGGGTCATGGGCAACAAGTACACCAAGTTCTCG
GCCCACTGGAGTCACCGGGCTTTACAATCGTGTTTTTTTTTGGGCCTGGC
TGCATCAACTCGATGGTTTAGCGGTTTACTGAAGTGGTCTCTGAAGGTTT
TGGGAGACAAAACACGGTGGTCTGAACATTTGGAACAACCACGATTGGAG
TAGCGCCCCTCGATGCCGTTCTCGTCACATCTGTGGATGCTTTTCCCAAG
AAAGTACACAGGTTTCTTCGGGGTGGACAGAGTGCCCATGGACACATGCC
ACATTCTACTTCTAGCTCTTGGGATCAGAATGAGGTCGCCACGAATTGGA
ATCTATTCAACGCCAGACGCGCCCCCTCCAGAGTTTCGTTTTGTGTGTTG
GTCGATTTCAGCTCGGCCGTGGATGGGATGCTTGAATCCGAATGTCCGGA
GCCCGTTTGTATGTTTTTCATTTCCTGGACGCCAACCAATAACCATCGTG
AGATGCGTGTATTTCGTATGAGTGCGTGCGTGAGGGACGTGGCGATTTTG
CACATCCATAGCGCTACTTATCTCTCCATCATCAATATTGACCAAGCCAA
CGTTTTCGTGGCAGTCCAGAGTCACGTGATACGGAAGATGTACCCCCTAC
CGTATGTCGCATAAGATAACACACCCCGTGGACCGATTTTCAAACCTCAA
TTCCTCCACACCGACGAGGGTGCCAGCATCAAACGGTATGTTTTTGGAAA
GCTCTCGACGAGATGGTTCCGACGCCGCCCTTTCCGGCACCCACACTCTT
TCCACTGTGGAGAAATTGTGCTTTGAAATCGGTCCAAGGGGTCTTATACG
ACCTACGGCACACTCCTGGACGGAGTTTTCGGTGTGGATCATCTTCATGG
CCGCCGCTGAAACATTGACTTATGGGGCCGACAAGCACCACCTCATTCCA
TTCCCTTTTCCCTCACGATGCATGTATCATACATCTGGTTTGGATACTAA
TCACCCCGCAACCTTTCCTCGGGCGCCATCCCACTGGAGCTGGCAAAACT
AACGAGGCTCCAACAGCTAGATCTCAGTTGGAACAACCTCAACGGTGAGA
AGTTTCGACGACATTTGTTGACAAGATGAAACTCTCATCAAAGGGGGGGG
ACGTTATATCCTCATGGCTTGCCTCCCTTGCGAATCGTCTCAACCCGGCC
CCGTTGGCACGCGTCGGCAGAGACCTGTTTCGCTCCATGTGGTTATTTCC
CTGTTAAAATCTTCACGGTAGCCGTCCCTTTTAGCCGCAGGTGCATGGAA
TGACATGTTCTCAGCATACCCAAAAAGTCACGAACATCAATATTGCATTC
GGCGTGCCTCATTCGAAATCAGATTTCTGAGCGTTGTGTTACAGGCCAGG
GGCTGCCGTCTTTTGCCTGCCGTTGCCCTCCCACCACTCTTGGCCCCGAA
TAAGCTGATGTATCTTCGAGTTAGCCCCCGGGGCATCGCAATAAATTAAA
ATGATACCCCCCCCCCCCCCCTCGAAGCGCTTGAGGGGAATGCGTCAAGT
TTGTTTTGTTCCGTTTTAGGAGGTGCCTTGCGGCAAATTTCCAGGGTACT
CGTCGGGAATATTCCCGACGTCATTTAGGCGGGAATTTGGGCGGTCCCGG
TACTGGCGGGAAGTACCGCCAAAATTCGCGGTACCGGGAACCGCCAAAAT
TGGTACCGCCAAAAAAACGAAAACCGCTTCCCGCCTAAAAATTCCCGCCG
TATTGCAGTACCGCCAAAAAAATACCGGCGAAATCTCGCGTTCCCGGGAC
CGCCTAAAAAAAACCGGCATATTGCAGTACCGCCAAAAAAGTACCGGCAT
ATTGCAGTACCGCCAAAATGGTACCGGCATATTGCAGTACCGCCAAAATG
GTACCGGCATATTGCAGTACCGCCAAAATGGTACCGGCATAGTGCAGTAC
CGCCTAAATGGTACCGCCGTACGCTAATTCCGCCTGGGGTTATGTACCAC
TAGGGCTTTCCAAACGTATACAGCAGTACAGTATACACCCAATGGACTAG
AGTTCGATCCTCACACCGCCTGTTTTTTTTTCTGTCTTCTTTTCTCTTTT
CTTTTCCAGCCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTCTTCGCGT
TGGTTCTATATATCGCTAGTGCCTTTTGGGCGGAACCTCTGTCTGCATGT
GCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCCAGGA
GCAGAGAGCAAACAAGCCGATCGATATCACCCTCTAGACTAGGGTAGCCG
AGAGTGCAGAGTGCTTTGTTGTGGATGTCTGACTACTGTGCCAGAGCTGG
TGATGAGGGTTGGGTTTGTTTTGCTAGTTGGGTTGTCAGCCATCGCTTCA
TCGCGGTGCATTTCTGTTTTGTTTTCTTTTTTCTTGTTTTTTGTTTTTCA
TTTTTTATTTTTTGTTTTTTCCGTTCTGTTGCTGCTTTTTTAAGAGAAGA
GAGACGACAGAGAAACGGCTTGCCGCTCGTTCAGCCGCCACAAAAATGTG
CATATATACATATATACAAGTATACAATATACAACAATAGCAGGATATAG
TGCAAATATAGACGTAAGGGCCGAAAGTACGAAAGTACCGCCATTTCCGG
CGACGGCGTGGTAAGCTTACCCAGTACCGCCGAATTTCGTAAAACCGGGA
ACCGCCGGAGGCAGTACCGCCACATTGTAAACCGCCGAAGGCGGTCCCGC
CATACTGCGAACCGCCGACGAGAGTACCGCCAAAAAATGCGGTACCGGGA
ACCGCCGAAGGCGTTCCCGCCAAACTGCGAACCGCCGACGAGAGTACCGC
CAAAAAATGCGGTACCGGGAACCGCCAAAAGTGGTCCCGCCAAAAAACGA
AAACCGCTTCCCGCCTAAAAATTCCCAAATTTCCCGCAGCGATTCAAAAA
ACAAACATAAAAAAACGGAGCGGCAGCCTCGAGATCGCAAGTGTGTGTGA
TGATTTTGTCACAAAACTCCGGGCACGTACGTCGTGGATGCAGCGGACCT
GTTCGTGCCCTTGTTTTGAATGCCATAAGGAGCGGAAGGGAATGAGTGCG
ATGTCACTTTGTTCTCGAAGTGCGTTTTCACCTTCGTGCGAAACCGACGG
CAAAATACACAATAGCACGTGAGAAAATGTTTTGCAACATTCCCTCAGGG
AGAGGCGTTTTTGAGCTATTTTTCTGGCCACCCGGCACGTGCACGTCACG
TACGGCAGATCCCATCGCTTTGTGCTCGAGTAGCCTGTGAATGCGTACAA
GCACCTCGAGTATTTGGACGGTTGTACACCAGTGTTATACACCAGTGTAG
CAAAGTCATGTATTGTGCTACCCACCGTACGGGCTCACACGAACAAACGT
CAAACCATGAATATTGTGAGATGAGTGAGGTCCGATGAGAGCAGTTACGA
AGAATGTGTGGTCATAGTGGGACGTGTATCACTTGACCAACCTCACTATC
GACGAGTTAACTGACGACGGTGATGTTCACGTGCCAGTCAGGCGTCACGA
AATGTCGAAAGGTGCGCGGCATCGCGTGTGTACTATTTCGGCAGCCACAA
CATTTTGTCATAAAAGCCCAGGCCGACAAGGACTACCTCATACCCGTCTG
GTTTCTCAGCTGCCGTTTTGACTTATGTCTGCGCCGGTCGAACGCTGCCG
CCACCTTCCTCAGGCACAGGTCCACGTCAGTTTGGGACCTAGCGGCACTC
CGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:190496..198249-

>mRNA_P-littoralis_Contig172.40.1 ID=mRNA_P-littoralis_Contig172.40.1|Name=mRNA_P-littoralis_Contig172.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig172:190496..198249- (Pylaiella littoralis U1_48)
ATGGTATTATCGCGGTACATGTATGGCCTGACGAACCTCGCTTTCCCTGG
TGCAAATGACGACGCCACATTCGAGTTTCAGTCCGGCGTACACGAACATT
GGAGTTGTGCGCGGCATCCCTTCGTCATTTTTTGTGTGCAGCCGTACCTT
GTTGCCATGGCCGTAACAGACCGACAAGCCTTCCCTTCCGACTGTCTGAT
TCTCTCATTTACATGTTTTACGCATGTGGGTTATCGGGTGCATCCTGCCA
TCACCTCCATGAGGCACCATTCCACCGGGGCTGGGGAGCCTGACAGCGCT
CCAGGAGCTAGATCTATGCCGGAACAAGCTCGCAGGCCCGATCCCGCCGG
CGCTGGGAAACTTGGTGGCTTTGGTAAAGCTGAAACTCTGGGACAACAAC
CTGAGCGGCGTGATTCCGCGGGAGCTAGGGAGACTGAAGGCACTCGAGCA
ACTATGCCTCAGGCCCGATCCCGCCGGCGCTCGGGGAACTCGTGGTTTTG
CAGACGCTGA
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