mRNA_P-littoralis_Contig172.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig172.36.1
Unique NamemRNA_P-littoralis_Contig172.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig172.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig172contigP-littoralis_Contig172:169176..169510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.413191-UTR-P-littoralis_Contig172:169175..1692601680789831.413191-UTR-P-littoralis_Contig172:169175..169260Pylaiella littoralis U1_48UTRP-littoralis_Contig172 169176..169260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.4239814-CDS-P-littoralis_Contig172:169260..1692701680789831.4239814-CDS-P-littoralis_Contig172:169260..169270Pylaiella littoralis U1_48CDSP-littoralis_Contig172 169261..169270 -
1680789831.4371295-CDS-P-littoralis_Contig172:169325..1695101680789831.4371295-CDS-P-littoralis_Contig172:169325..169510Pylaiella littoralis U1_48CDSP-littoralis_Contig172 169326..169510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig172.36.1prot_P-littoralis_Contig172.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig172 169261..169510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig172.36.1

>prot_P-littoralis_Contig172.36.1 ID=prot_P-littoralis_Contig172.36.1|Name=mRNA_P-littoralis_Contig172.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
SSSSSGSRNGSRRKRLGVSTTDEGRGGGERTPERDIRTKKKRTLKYLSHH
GDRLWVIVFNKGGV*
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mRNA from alignment at P-littoralis_Contig172:169176..169510-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig172.36.1 ID=mRNA_P-littoralis_Contig172.36.1|Name=mRNA_P-littoralis_Contig172.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=335bp|location=Sequence derived from alignment at P-littoralis_Contig172:169176..169510- (Pylaiella littoralis U1_48)
AGCAGCAGCAGCAGCGGAAGTAGGAACGGAAGCAGGAGGAAACGCCTGGG
CGTGAGCACGACAGACGAAGGAAGAGGGGGGGGCGAGAGAACTCCAGAGA
GAGACATAAGGACCAAGAAAAAACGAACACTGAAGTATTTGAGTCACCAT
GGTGATCGTCTGTGGGTGATCGTTTTCAACAAGGGCTCGTGTGCACATTG
TACATCAGTGAATAGGAGGAGGACTGCTCATCTTAGACACGGGTGTTTGA
TTGTCAGATTCCACCCGTGGGTGTGTGTATCATATTGCATCTCATCGCAT
CAGGGGCCATCAGTAGGGGAAGTACACCACCAGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig172:169176..169510-

>mRNA_P-littoralis_Contig172.36.1 ID=mRNA_P-littoralis_Contig172.36.1|Name=mRNA_P-littoralis_Contig172.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig172:169176..169510- (Pylaiella littoralis U1_48)
AGCAGCAGCAGCAGCGGAAGTAGGAACGGAAGCAGGAGGAAACGCCTGGG
CGTGAGCACGACAGACGAAGGAAGAGGGGGGGGCGAGAGAACTCCAGAGA
GAGACATAAGGACCAAGAAAAAACGAACACTGAAGTATTTGAGTCACCAT
GGTGATCGTCTGTGGGTGATCGTTTTCAACAAGGGGGGTGTTTGA
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