mRNA_P-littoralis_Contig171.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.121.1
Unique NamemRNA_P-littoralis_Contig171.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 9.730e-152
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 1 
Query:    1 MATELNPDGWDAGEPVAAEESAGAE-WGEPETDAPLAVEETGISDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            MATELNPDGWD GEPV A+++  AE WGEPE +APLAVEE+GISDVQLFNKWSF+DIEIRDISLEDYIAVKGKYAT+LPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATELNPDGWDGGEPVVADDAGAAEGWGEPEVEAPLAVEESGISDVQLFNKWSFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: B8CC69_THAPS (RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8CC69_THAPS)

HSP 1 Score: 330 bits (845), Expect = 2.320e-112
Identity = 161/192 (83.85%), Postives = 181/192 (94.27%), Query Frame = 1 
Query:  121 GISDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            G ++V+LF KWSF+DIEIRDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL C LMRKGRNSGKKLMA RIV+HTLEIIHLLTDQNPVQV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   27 GATEVKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTVAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 218
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A7S3V821_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3V821_9STRA)

HSP 1 Score: 327 bits (839), Expect = 2.260e-111
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1 
Query:   31 DAGEPVAAEESAGAEWGEPETDAPLAVEETGISDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            D  EP+  E +   E  E E + P  V + G ++++LF KWSF++IE+RDISLEDYIA KG +AT+LPHTAGRYQ KRFRKA+CPIVERL C LM+KGRNSGKK+MA RIV+HTLEIIH+LTDQNP+Q++VDAVINSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:    3 DVEEPIVEETTYDEEVEEVEEE-PEFVGDAGGAEIKLFGKWSFDEIEVRDISLEDYIACKGDHATYLPHTAGRYQMKRFRKASCPIVERLACCLMKKGRNSGKKIMATRIVQHTLEIIHILTDQNPIQIVVDAVINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 223
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: W7TXQ4_9STRA (Ribosomal protein S7, conserved site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXQ4_9STRA)

HSP 1 Score: 326 bits (835), Expect = 6.960e-111
Identity = 166/205 (80.98%), Postives = 185/205 (90.24%), Query Frame = 1 
Query:   85 PETDAPLAVE-ETGISDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            P   A +AV  E   +D++LF KWS +D+EI+D+SLEDYI V GK AT+LPHTAGRYQKKRFRKA CP+VERL  +LMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:   11 PYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)

HSP 1 Score: 325 bits (832), Expect = 9.240e-111
Identity = 160/190 (84.21%), Postives = 181/190 (95.26%), Query Frame = 1 
Query:  127 SDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            S+++LFNKWS++DIEI DISL DY+AV  K+ATFLPHTAGRYQKKRFRKA CP++ERL  +LMRKGRNSGKKL+AAR+V+ T+EIIHLLTD+NP+Q LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct:    4 SEIKLFNKWSYDDIEIEDISLSDYLAVGTKHATFLPHTAGRYQKKRFRKAACPLIERLTVSLMRKGRNSGKKLLAARVVRSTMEIIHLLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A7S4N0H9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0H9_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.220e-110
Identity = 159/192 (82.81%), Postives = 179/192 (93.23%), Query Frame = 1 
Query:  121 GISDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            G ++V+LF KWSF+D+E+RDISL DYIA  G +A FLPHTAGRYQKKRFRKA+CPIVERL C LM+KGRNSGKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERVAK+NR
Sbjct:   40 GATEVKLFGKWSFDDVEVRDISLVDYIACTGDHAVFLPHTAGRYQKKRFRKASCPIVERLACCLMKKGRNSGKKLMACRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVAKSNR 231
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: D8TJL0_VOLCA (Component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Viridiplantae TaxID=33090 RepID=D8TJL0_VOLCA)

HSP 1 Score: 323 bits (829), Expect = 2.650e-110
Identity = 157/189 (83.07%), Postives = 177/189 (93.65%), Query Frame = 1 
Query:  130 DVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            DV+LF KWSF DIE++DISLEDYIAVK KYA ++PHTAGRYQKKRFRKA CPIVERLC +LM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QVLVDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    5 DVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A6V2ER46_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ER46_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.070e-109
Identity = 157/189 (83.07%), Postives = 179/189 (94.71%), Query Frame = 1 
Query:  130 DVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            +V+LF KWSF++IE+RDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL C LMRKGRN+GKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   45 EVKLFGKWSFDEIEVRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNAGKKLMAVRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 233
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BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: A0A2K3DQA6_CHLRE (Ribosomal_S7 domain-containing protein n=9 Tax=CS clade TaxID=2812636 RepID=A0A2K3DQA6_CHLRE)

HSP 1 Score: 320 bits (821), Expect = 4.370e-109
Identity = 155/189 (82.01%), Postives = 176/189 (93.12%), Query Frame = 1 
Query:  130 DVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            DV+LF KWSF DIE+ DISLEDYIAVK KYA ++PHTAGRYQK+RFRKA CPIVERLC +LM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QV+VDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    5 DVKLFGKWSFEDIEVTDISLEDYIAVKTKYAVYVPHTAGRYQKRRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
[Close]
BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Match: F0XZC6_AURAN (Ribosomal_S7 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XZC6_AURAN)

HSP 1 Score: 320 bits (821), Expect = 4.690e-109
Identity = 155/190 (81.58%), Postives = 177/190 (93.16%), Query Frame = 1 
Query:  127 SDVQLFNKWSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            S+++LF KW+++D+E+ DISLEDYIAVKGK++ +LPHTAGRYQKKRFRKA CPI ERL CALMRKGRN+GKKL A RIV+ TLEI+HLLTDQNPVQVLV A++ SGPREDSTRVGSAGVVRRQAVD+SPFRRVN ALYL+ TGARE++FRN+KTIAECLADE+INAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    6 SEIKLFGKWTYDDVEVNDISLEDYIAVKGKHSVYLPHTAGRYQKKRFRKALCPITERLVCALMRKGRNNGKKLKAVRIVQSTLEIVHLLTDQNPVQVLVQAILQSGPREDSTRVGSAGVVRRQAVDMSPFRRVNMALYLLCTGAREAAFRNVKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT8_9PHAE9.730e-15294.42Ribosomal_S7 domain-containing protein n=2 Tax=Ect... [more]
B8CC69_THAPS2.320e-11283.85RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID... [more]
A0A7S3V821_9STRA2.260e-11174.32Hypothetical protein n=3 Tax=Bacillariophyta TaxID... [more]
W7TXQ4_9STRA6.960e-11180.98Ribosomal protein S7, conserved site n=2 Tax=Monod... [more]
A0A835ZGP4_9STRA9.240e-11184.21Ribosomal protein S7 domain-containing protein n=1... [more]
A0A7S4N0H9_9STRA1.220e-11082.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
D8TJL0_VOLCA2.650e-11083.07Component of cytosolic 80S ribosome and 40S small ... [more]
A0A6V2ER46_9STRA1.070e-10983.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2K3DQA6_CHLRE4.370e-10982.01Ribosomal_S7 domain-containing protein n=9 Tax=CS ... [more]
F0XZC6_AURAN4.690e-10981.58Ribosomal_S7 domain-containing protein n=2 Tax=Pel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:419155..423951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1X8
Preferred nameRPS5
PFAMsRibosomal_S7
Model size699
Max annot lvl2759|Eukaryota
KEGG koko:K02989,ko:K18914
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons5
Evalue5.11e-149
EggNOG OGsCOG0049@1|root,KOG3291@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S5/S7, eukaryotic/archaeal
Ec32 orthologEc-07_003740.1
EC1.18.1.6
DescriptionrRNA binding
Cds size699
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789831.0784535-CDS-P-littoralis_Contig171:419154..4193221680789831.0784535-CDS-P-littoralis_Contig171:419154..419322Pylaiella littoralis U1_48CDSP-littoralis_Contig171 419155..419322 -
1680789831.0955641-CDS-P-littoralis_Contig171:419898..4200151680789831.0955641-CDS-P-littoralis_Contig171:419898..420015Pylaiella littoralis U1_48CDSP-littoralis_Contig171 419899..420015 -
1680789831.1089394-CDS-P-littoralis_Contig171:420997..4211321680789831.1089394-CDS-P-littoralis_Contig171:420997..421132Pylaiella littoralis U1_48CDSP-littoralis_Contig171 420998..421132 -
1680789831.119909-CDS-P-littoralis_Contig171:421577..4217041680789831.119909-CDS-P-littoralis_Contig171:421577..421704Pylaiella littoralis U1_48CDSP-littoralis_Contig171 421578..421704 -
1680789831.1316652-CDS-P-littoralis_Contig171:423799..4239511680789831.1316652-CDS-P-littoralis_Contig171:423799..423951Pylaiella littoralis U1_48CDSP-littoralis_Contig171 423800..423951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.121.1prot_P-littoralis_Contig171.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 419155..423951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.121.1

>prot_P-littoralis_Contig171.121.1 ID=prot_P-littoralis_Contig171.121.1|Name=mRNA_P-littoralis_Contig171.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp
MATELNPDGWDAGEPVAAEESAGAEWGEPETDAPLAVEETGISDVQLFNK
WSFNDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERL
CCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPR
EDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAEC
LADEIINAARGSSNSYAIKKKDEIERVAKANR*
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mRNA from alignment at P-littoralis_Contig171:419155..423951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.121.1 ID=mRNA_P-littoralis_Contig171.121.1|Name=mRNA_P-littoralis_Contig171.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4797bp|location=Sequence derived from alignment at P-littoralis_Contig171:419155..423951- (Pylaiella littoralis U1_48)
ATGGCTACCGAACTGAACCCTGACGGATGGGATGCAGGAGAGCCCGTAGC
GGCTGAAGAGTCTGCTGGCGCCGAGTGGGGCGAGCCGGAGACGGACGCTC
CTCTGGCTGTGGAGGAGACTGGCATCTCTGATGTCCAGCTCTTCAATAAG
TGGTGAGAGGAGCGTGCAGCCAGCGGATTGGACTGCTGTTACGTTGCTTC
TCTGGGCGGTCACGTCCGGCTGGTGCCGCCTAGTACCACGCTGTGCAGTG
GTCGTTCGACTGTGGTTTGACAGAGACGGTGGTTTTGGTTGTGCTTGTTC
TCTTGTCCTTTTGGTTGAAGGGTTTGACTCCAGTGTATCAACACCTCTCA
GATTCCAGCCCGTTGCTCCCCAGACCCAGATAGCAGCGGTGTTGAAAGCG
GCAGAGGTTGGTGCCCAGTTCGAACTTGTGTGGTGAGCCCGTGCAAACGT
TGTATTCATCGAGATCACAAGATGCAACATGCTCAGCCCGTCTTTGTCTT
AGCTTTTCAAATCGTCGAAGTCGCGCTTGTGCACACGGCCCACCCAGCCT
TTGCGTCTCTACCTGGTAGCATCGGTTAAGTCTAATGCATTTGAGACACC
GCTCATTTTTTGGATGGTGTACGAGAACAACCCGCACCAGATTTGATACC
TGTACCTTGTAATTCGAAGTACAACGTTAGCTGCTTTTCACGGCCGTCGA
CTGCTGGCTTCCCTCTCTTGTCTGCCGCTAGTCTTGGAATATCCTGTACG
GCAGAGTCACCTGGGGCACTCGTCTTTGCGTCTGGGGAGCTCAACCGCTG
CCTTTTTTACTCTCATGATACCAGCAACTGAACAATAGCTCATTTCAGTA
TTTCGGTGCTCGAAACCGTAACGCACCCTCTTGACATGGTACTAGCAGCG
GCTCGACGTCGATCTCACAGCATTTGTCATGCAGCAGGGTACTTCGAGGC
CCCTTTGCAAAACAATGAAAACATAAGGCTCACTATTTTGAGAGGGGTCG
GGATACTTTTGGAAGTTATTTTATTTTTGTGTTATCATATGTAGACAGAT
TACCAGTTACCTTAAAAAAAGCTGTACCTTAAAAAAAGCTGTAAGGAGAA
AGACCAACACAACAGAAGTTGGTCGAGGAAAAAAAAAGAACTTCTGTGTG
ACCTTCCTTCTCTGTGTAGCCCGGCCTGTGCACCCACTTCATGCCGAAAG
GTGTCGACTGGAGCCCAAAACAATTAGGATGAAAACACAAATACAAACAG
ACCGACTGTTCCCTTCGTCACGACAGCAGCCAACGCGACGGACCTGCTGT
GTCATTCGGATCACTTGCTGCATTGGGAAAACTAAATTATCATGTTCATG
TTGTACGTGAAGGAAATACAAGTACATGCGCGCGACAGCTGCTCTACTGC
CCCCCCCACCCCCCCCTCAAACCGCAGTAGCAGACCCGTTGCCCTTGTTT
TCGCGAAAGTGTCGCATTGGGTCAATCTCGATGCCAACACAGCAGAGAGC
CTCGATGAAACGACAACTGGAACTTGTACACGTACTTTGTATTATTTCGC
TCGTCATATGTTTTGGTTGATCACATATGTATGACGTAAAATCTCTCCGG
GCAGTTTAAGGTTAGTGCGCTCAGTTGAATATTTTGACAAAAGTGTGGCG
TACTTGACGCACGCACGATATTTCAACGTGTCGCAAGCACGTCGGTTATG
TTTGCGGCAACTTATCGCAACACTCTACAGCAGCCGTATTGCACACATGT
TGCTGCACCGCGCACAGGGTCGCCGCCCCGCATGTATCGGGCTCTACGTC
GGCGTCGGCATTATTTGGCCAATCCAAGACTAGTACGATAGGCTTTTCAC
ATCCATTGGACACTTCGTCGTGAGTTGTCCATGGTTTGCCTCTCGTGAAG
TTGCGCAGAAGCGCCGAGGCAGGTCGACCATCTGCCCCCTCAGACCTACT
ACGCTGTTGTCGGTGTCGAACATGTGCGACCGGCGGCAGGTCCTGGTATA
GGCGGGAAGTGTTTCCCCATTTTCACCCCCACGTTCCCCTCTGGCGAGCG
CAGGTACGCACACCAACACGATGGTCATGAAATTGAAACTACCGTCTTGG
CGTGCCTCGTGTTCTTTACTCGAGCCCCCTCCAAAGCTCTCAGATTCAAC
CAAGGCCCCGTTTACTTTGTCTCCGGGGCTCGCTTCTCGCCTGCTCATAC
CAACCCCCATTCACCCTTTTTCCTCCCGCTCTTGTTTGTCGTTCCAGGTC
CTTCAATGACATTGAGATCCGCGACATCTCTCTGGAGGACTACATCGCCG
TGAAGGGGAAGTACGCCACCTTCCTCCCCCACACTGCCGGGCGCTACCAG
AAGAAGCGCTTCCGCAAGGCCACTGTAAGTCTCAGTATACTTGTTTGTGC
CGTACATATTTGCTTTGGTTGTCGAAGCTTGGTCGGTGATTCTTCGTCAG
CAAAGGCATACTACCGCAATGTCGGAGCGAGTTTCGTGTTGTGGTTGCTG
TCATTGTGGTTGAGAGGTTTGAGTGGCCGTTGATGACCACCAGAGCTTAT
TCCGAAGAATAAGGAAGTGTTTTCATTGGTCCACCACATGGTCCTCTCGT
TCTTTCGTTTCCTCGGAAGGACGGTATTTACTGTGTCACGACGAACTCAA
TGCCACCCACGAAAATTGAGGATAACCGCTGCTCTTGTCTGTGCGGCGTG
TGTTGGTCGTTTAGTGGGTATATTCAACTCCGCCACACGTGAAACCGTTG
CGCTTATTTGAGACCCCTGACTTGCATCAACGTTCCGCCCCCCATGCGCG
CGTACCCCCAATCACGCAGTGCCCCATCGTGGAGCGCCTTTGCTGCGCCT
TGATGCGCAAGGGCCGCAACAGCGGTAAGAAGCTCATGGCGGCTCGCATC
GTCAAGCACACCCTGGAGATCATCCACCTCCTCACCGACCAAAACCCCGT
GCAGGTATGTCCCTCAAGTACCTGCTCTCTCTCGTCTTGGAAGCTGGTTT
TGCTCACGTCTTTCTCTTATCATCAAACCTGTGGTTGACTCTTGGTAACT
CAATACCATTCTGAACTGAGGTGGCTTGTCAGCTGAAAGAAATTACCTTC
AATAAGGATGCGTTTTTCCCAAGTGCAAATGTCAAACGGTGTGTAATATA
AGACTATTGACTACTCTGTCGGAGGTGAAAGGCTTTTGCGAAAGTTAAGT
TAGGTCGACTTGCGAAAACAAGTTGACGGAAACACAAAAGTCAAAAGTTT
ACCTGTGTTCGCCTTAAAACAAAGGCAGTGGGATCGTCCTTGAGCATCAA
GCAAAAACTAATTGTGTGCCGCTGACCTCAGGAAACGTGCCCCATGCCGA
GCACGCGCTTGTATATCTCCCTCCCCACTGACTAAACAGAACTAGCTGCG
CACGGGGTGAAAACGGGGGTGACTTGTTCGTTGGCAAAAATAACTGACGC
TGCGTTTCGCCACACAAGTCAGAAGTCTACAGCTGTAATGGTTGGAACAA
GGCCCAAACATGGGGCGTGTGACTCGCGTATAGGTTTTGTCAAGGGTTTA
CGAAATGGCTGGGTAAATGCAATGTACAAATATGCGTTGATTTTTATTTT
CCGTAAGTCGCTGTTTTTTTTTTTTTTGTCCTCTCCTGGTCGGCAAGGTG
AAAGGTGTGCTCACTTTCCCTTATCAAAAGGCTTCGTTAGATGGTTTCTG
TTGCACGAGAGGGAAAAAATTTATGGGGTTCACGCGGAACAAAGAAGTGC
CGCCCGACGTGGCTCCTTCACGATGTGCTCACGCACATGGAGAATGAATC
TCGAGCCTATGATATCGCCACGTCATCGGTGAAGCTCCTCGGTACGAAAC
TATATCGTCCTACTGTTTTTGTTGAACGACCGGCACCGTATCATACCTCG
TCTAACGGTCGGATTCTGCCGTTTTCCACTCGCCAGGTGCTGGTGGACGC
GGTGATCAACTCGGGGCCCCGGGAAGACTCTACCCGTGTGGGATCTGCGG
GTGTGGTGCGGCGCCAGGCTGTCGACCTCTCGCCTTTCCGCCGTGTGAAC
CAGGTTCGTTCAACGCAACATCGATTGATTATGCCACAGACCTTGTGCCG
CGGGCGAAGTTCGTCCATCTACAGTAGTGTATGTGTGTCAAGCCACGATG
ATGGTAGAGGGTGTGCACGTTTGTAGCCTTTTTTTCCCACATGACATGCG
GTTTTCCGTACGTACCGCTGTGTCTTTTCGCTTCGGTTGTGAGACGGCAG
CGTGCTTGTGATTGCCACTTGTGTCGTTTTTCTTGCCCGCCGTCATCTCC
CGTCAGTTCATCCAGCCGTGTTTCCAGAGTGCTGCTCTGAGCTCAGGATG
TTGTTTTGTGTCTCTCGTTTGCTTTGGCGGCGGTCTCAATCTGTATGACA
TACCCGCCGGCGTGTCTAACTCATGCTGATGCATACTTTCCCACAAAGCC
TTCCTCTCACGTTTTTGGGCGGTTTTCCCGAAGGGTGCTTGCGTTCTACA
AGAGTTGGGTTCAGTTAAGAGTTTGTAAGGTAACTTCCAATCCAAATAAT
GTTGTCCCTTTGGCCACCTAAGACGGAAATATACTCATCTTTCGTCCTAC
GCGTCCGTGCCGTGTCGTAACACCATCAGGCTCTGTACCTGATCACCACC
GGCGCGCGCGAGTCCTCTTTCCGCAACATCAAGACCATCGCCGAGTGCCT
CGCCGATGAGATCATCAACGCTGCCCGGGGATCTTCCAACTCTTACGCCA
TCAAAAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCTAACCGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:419155..423951-

>mRNA_P-littoralis_Contig171.121.1 ID=mRNA_P-littoralis_Contig171.121.1|Name=mRNA_P-littoralis_Contig171.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig171:419155..423951- (Pylaiella littoralis U1_48)
ATGGCTACCGAACTGAACCCTGACGGATGGGATGCAGGAGAGCCCGTAGC
GGCTGAAGAGTCTGCTGGCGCCGAGTGGGGCGAGCCGGAGACGGACGCTC
CTCTGGCTGTGGAGGAGACTGGCATCTCTGATGTCCAGCTCTTCAATAAG
TGGTCCTTCAATGACATTGAGATCCGCGACATCTCTCTGGAGGACTACAT
CGCCGTGAAGGGGAAGTACGCCACCTTCCTCCCCCACACTGCCGGGCGCT
ACCAGAAGAAGCGCTTCCGCAAGGCCACTTGCCCCATCGTGGAGCGCCTT
TGCTGCGCCTTGATGCGCAAGGGCCGCAACAGCGGTAAGAAGCTCATGGC
GGCTCGCATCGTCAAGCACACCCTGGAGATCATCCACCTCCTCACCGACC
AAAACCCCGTGCAGGTGCTGGTGGACGCGGTGATCAACTCGGGGCCCCGG
GAAGACTCTACCCGTGTGGGATCTGCGGGTGTGGTGCGGCGCCAGGCTGT
CGACCTCTCGCCTTTCCGCCGTGTGAACCAGGCTCTGTACCTGATCACCA
CCGGCGCGCGCGAGTCCTCTTTCCGCAACATCAAGACCATCGCCGAGTGC
CTCGCCGATGAGATCATCAACGCTGCCCGGGGATCTTCCAACTCTTACGC
CATCAAAAAGAAGGATGAGATCGAGCGTGTGGCCAAGGCTAACCGGTAG
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