mRNA_P-littoralis_Contig171.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.93.1
Unique NamemRNA_P-littoralis_Contig171.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 9.350e-33
Identity = 79/163 (48.47%), Postives = 105/163 (64.42%), Query Frame = 2
Query:  623 YVDIMTVLVDAG-VVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQS----FVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
            +++ M VL+DAG VVDTG AL  AA +G   +V FLL+RR+ +      Y+N T++P+GRTP++CA+++G   LC  +IVRLL+DAGA+TT A      +        TPLAF T L R   + G  + ATKEQL+ L DTR LL R +AVHAVSWLW    P
Sbjct:  228 HLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADA---YVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDG--EAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEP 385          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.670e-31
Identity = 77/162 (47.53%), Postives = 97/162 (59.88%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSF---VERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVPR 1099
            ++D+M  L  AGVVDTG AL KA   G    V FLL+++ G  +    Y++  ++P GRTPLIC I++G +  C  ++VRLL+DAGADTT   RF  Q     V  TPL+ AT   R K  +  RK    E L  L   RRLLLRV+AVHA SWLW   VPR
Sbjct:  229 HMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIK--IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPR 388          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.260e-30
Identity = 79/155 (50.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  626 VDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADT---TLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
            VDIM +L   GVVDTG AL  AA +  E SV FLL+ + G   GG  Y+NNT +PFGRTPL+C I     G    RI R LIDA ADT    L  +    +    TPL FAT+  R   +  GRK+AT+EQL  L    RLL +VDAVHAVSWLW
Sbjct:  217 VDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAG---GGAWYVNNTLDPFGRTPLVCTIE--ACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKV--GRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLW 364          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.220e-29
Identity = 78/156 (50.00%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADT---TLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
            YVDIM +L   GVVDTG AL  AA +  E SV FLL+ + G   GG  Y+NNT +PFGRTPL+C I     G    RI R LID GADT    L  R    +    TPL FAT   R   + G  K+AT+EQL  L    RLL +++AVHAVSWLW
Sbjct:  226 YVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAG---GGTWYVNNTLDPFGRTPLVCTIE--ACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGG--KNATEEQLRSLKAIHRLLSQIEAVHAVSWLW 374          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.710e-27
Identity = 78/162 (48.15%), Postives = 94/162 (58.02%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDT-GTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFAT-QSFVER--TPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
            ++DIM +L  AGV D  G  L   A  G E SV FLL++R   +   +    N+ +  G TPL C+I   + G  + RIVRLL+DAGADTT   R       VE   TPLA  T L R K + G  K AT+EQL  L   RRLLLRVDAVHAVSWLWP + P
Sbjct:    4 HMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG--NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDG--KPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAP 161          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 9.770e-25
Identity = 80/170 (47.06%), Postives = 96/170 (56.47%), Query Frame = 2
Query:  614 NTSYVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIG----YLNNTQEPFGRTPLICAINLGTDGLCHR--RIVRLLIDAGADTTLAARFATQS---FVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
            +  ++DIM +L +AGVVDTG AL  AA  G E SV FLL+ R  +  GG G    YLN  ++  G TPL+      T G   +  RIVR+L+DAGADTT   +            TPLAF     R K +  G K ATKE L+ L    RLLLRVDAVHAVSWLWP   P
Sbjct:  321 SNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHR--HKEGGCGVEGAYLN-ARDVNGYTPLVVC----TQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADG-KPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAP 482          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.600e-23
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSF---VERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
            ++D+M +L DAGVVDTG AL      G ER++ FLL+++ G  T    Y +  ++  G TPL+ A+   T G C  R+VRLL+DAGAD TLA R     F    + TPL  AT     K +      AT +QL  L  +RRLLL+V+ VHA SWLW
Sbjct:  227 HLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQK-GEGTARTTYASTPRDGRGHTPLLSAV---TTGPCSPRVVRLLVDAGADATLAVR-VPDGFGRSTKYTPLDCATRCLAEKVV--DEDFATAQQLRNLRASRRLLLQVEVVHATSWLW 375          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.020e-22
Identity = 69/159 (43.40%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  626 VDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQ---SFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINV 1093
            ++IM +L +AGVVDTG AL  AA +G E  + FLL++     T       NT++  G TPL+  I          R+VRLL++AGADTT       Q     V  TPL       R K  + GR  A+ EQL  L   RRLLLRV+AVHAVSWLWP ++
Sbjct:  233 LNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQH-----YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDI 386          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.340e-21
Identity = 70/157 (44.59%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFAT---QSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWP 1084
            +V I+ +L  AGVVD G+ALA AA  G E SV FLL++ EG  +       N    FG TPL+  I   T G C  RIVRLL+DAGADTT A R      Q+    T L     L   K   G     T E+   L  T RLLL+V+A HA+SW+WP
Sbjct:  233 HVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSAYVNKLNRFGLTPLLENI---TCGHCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD----TGEEPHNLQATFRLLLQVEAAHAISWVWP 382          
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.320e-21
Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
            ++ IMT L DAGVVDTGTAL   A  GLE  V FLL+++  NT GG  Y+N        TPL  AI   +      R+VR+L+DAGAD T     +    + R+PL+      R K        AT+EQL  L   RRLLLRV+A++A SWLW  N+P
Sbjct:  284 HMSIMTALTDAGVVDTGTALFNVAAKGLEAPVKFLLQQKW-NTPGG-AYVNTRSRNAKFTPLFIAIEGASP-----RVVRMLLDAGADVTSTC--SLPGGISRSPLSQCESNIRSKFCQA--LPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIP 430          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1H7_ECTSI9.350e-3348.47EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FVK3_ECTSI2.670e-3147.53EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K037_9PHAE3.260e-3050.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U9_ECTSI1.220e-2950.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LSC5_ECTSI2.710e-2748.15EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI9.770e-2547.06EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LL76_ECTSI4.600e-2344.23EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE6.020e-2243.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY91_ECTSI6.340e-2144.59EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7FXH6_ECTSI7.320e-2144.30Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:297135..298233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNF8
PFAMsAnk_2,Ank_4
Model size1099
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.45e-22
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat protein
Ec32 orthologEc-15_003990.1
Descriptionspectrin binding
Cds size705
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.1876-UTR-P-littoralis_Contig171:297134..2971371680789830.1876-UTR-P-littoralis_Contig171:297134..297137Pylaiella littoralis U1_48UTRP-littoralis_Contig171 297135..297137 +
1680789830.213134-UTR-P-littoralis_Contig171:297842..2982331680789830.213134-UTR-P-littoralis_Contig171:297842..298233Pylaiella littoralis U1_48UTRP-littoralis_Contig171 297843..298233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789830.2007067-CDS-P-littoralis_Contig171:297137..2978421680789830.2007067-CDS-P-littoralis_Contig171:297137..297842Pylaiella littoralis U1_48CDSP-littoralis_Contig171 297138..297842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.93.1prot_P-littoralis_Contig171.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 297138..297842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.93.1

>prot_P-littoralis_Contig171.93.1 ID=prot_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MLTIVSNGTVDVDFRHDGDSKGWTPLMLAAFEGNARVAGLFLEKGADVSI
FSKGTAFCALHISARHGHLAVTKMLTKAGADVEARTCDGFTPLHLAAEQG
YSEVMKVLIGAGASIDPRLECSGETPLYSAALAGHVEAVRILLGAKANPL
ATTTAHEVVDIPLDVAAGFGHFDVVCELVQQCGIEGCGGTSVSVYALSKA
ALGQYFVCRHHDRVGGRGSGRYGHRPGQGRPPWP*
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mRNA from alignment at P-littoralis_Contig171:297135..298233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.93.1 ID=mRNA_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-littoralis_Contig171:297135..298233+ (Pylaiella littoralis U1_48)
CTGATGCTTACCATAGTTTCGAACGGGACGGTAGACGTCGATTTTCGCCA TGATGGCGACTCTAAAGGCTGGACCCCTCTCATGCTAGCCGCCTTCGAGG GTAACGCGCGCGTTGCCGGTTTGTTTTTGGAAAAGGGGGCCGACGTATCC ATCTTCTCCAAAGGTACTGCTTTTTGTGCCCTCCACATTTCCGCGAGGCA CGGACACCTGGCCGTGACCAAGATGCTAACGAAAGCGGGCGCAGACGTGG AAGCAAGGACCTGTGATGGCTTCACACCACTGCACCTGGCGGCGGAGCAA GGATACTCAGAGGTGATGAAGGTGCTGATTGGGGCAGGCGCGAGTATCGA CCCCCGTTTGGAGTGCAGCGGGGAGACACCGCTGTATAGTGCGGCTTTAG CAGGACATGTGGAAGCGGTCAGGATTCTCCTTGGTGCGAAGGCGAACCCG TTGGCCACCACGACCGCGCATGAAGTGGTGGACATCCCTCTGGACGTGGC GGCGGGATTTGGACACTTCGACGTGGTTTGTGAGCTCGTGCAGCAGTGTG GGATCGAAGGTTGTGGCGGAACCAGCGTAAGCGTATACGCCCTATCAAAG GCCGCGCTGGGGCAATACTTCGTATGTAGACATCATGACCGTGTTGGTGG ACGCGGGAGTGGTCGATACGGGCACCGCCCTGGCCAAGGCCGCCCACCAT GGCCTTGAGCGGTCCGTAACGTTTCTCTTGAAGCGGCGGGAGGGGAACAC TACCGGTGGAATTGGCTACTTGAACAACACCCAGGAACCTTTTGGCAGAA CGCCCTTGATTTGTGCTATCAATCTCGGCACTGACGGGTTGTGTCATCGC AGGATTGTGCGGCTGCTCATTGACGCTGGGGCGGACACGACGTTGGCCGC TCGGTTTGCGACGCAGTCATTTGTCGAGCGAACACCTCTGGCTTTCGCAA CATACCTATTCCGCTTCAAAACGATAATGGGAGGGCGTAAAGACGCCACA AAGGAGCAGCTGGAGATTCTGGCGGATACCCGCCGTTTATTGTTGCGGGT GGATGCGGTTCATGCGGTGTCTTGGTTGTGGCCCATTAATGTCCCCCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:297135..298233+

>mRNA_P-littoralis_Contig171.93.1 ID=mRNA_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig171:297135..298233+ (Pylaiella littoralis U1_48)
ATGCTTACCATAGTTTCGAACGGGACGGTAGACGTCGATTTTCGCCATGA
TGGCGACTCTAAAGGCTGGACCCCTCTCATGCTAGCCGCCTTCGAGGGTA
ACGCGCGCGTTGCCGGTTTGTTTTTGGAAAAGGGGGCCGACGTATCCATC
TTCTCCAAAGGTACTGCTTTTTGTGCCCTCCACATTTCCGCGAGGCACGG
ACACCTGGCCGTGACCAAGATGCTAACGAAAGCGGGCGCAGACGTGGAAG
CAAGGACCTGTGATGGCTTCACACCACTGCACCTGGCGGCGGAGCAAGGA
TACTCAGAGGTGATGAAGGTGCTGATTGGGGCAGGCGCGAGTATCGACCC
CCGTTTGGAGTGCAGCGGGGAGACACCGCTGTATAGTGCGGCTTTAGCAG
GACATGTGGAAGCGGTCAGGATTCTCCTTGGTGCGAAGGCGAACCCGTTG
GCCACCACGACCGCGCATGAAGTGGTGGACATCCCTCTGGACGTGGCGGC
GGGATTTGGACACTTCGACGTGGTTTGTGAGCTCGTGCAGCAGTGTGGGA
TCGAAGGTTGTGGCGGAACCAGCGTAAGCGTATACGCCCTATCAAAGGCC
GCGCTGGGGCAATACTTCGTATGTAGACATCATGACCGTGTTGGTGGACG
CGGGAGTGGTCGATACGGGCACCGCCCTGGCCAAGGCCGCCCACCATGGC
CTTGA
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