mRNA_P-littoralis_Contig171.93.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 136 bits (343), Expect = 9.350e-33 Identity = 79/163 (48.47%), Postives = 105/163 (64.42%), Query Frame = 2
Query: 623 YVDIMTVLVDAG-VVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQS----FVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
+++ M VL+DAG VVDTG AL AA +G +V FLL+RR+ + Y+N T++P+GRTP++CA+++G LC +IVRLL+DAGA+TT A + TPLAF T L R + G + ATKEQL+ L DTR LL R +AVHAVSWLW P
Sbjct: 228 HLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADA---YVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDG--EAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEP 385
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 132 bits (333), Expect = 2.670e-31 Identity = 77/162 (47.53%), Postives = 97/162 (59.88%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSF---VERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVPR 1099
++D+M L AGVVDTG AL KA G V FLL+++ G + Y++ ++P GRTPLIC I++G + C ++VRLL+DAGADTT RF Q V TPL+ AT R K + RK E L L RRLLLRV+AVHA SWLW VPR
Sbjct: 229 HMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIK--IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPR 388
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 129 bits (324), Expect = 3.260e-30 Identity = 79/155 (50.97%), Postives = 93/155 (60.00%), Query Frame = 2
Query: 626 VDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADT---TLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
VDIM +L GVVDTG AL AA + E SV FLL+ + G GG Y+NNT +PFGRTPL+C I G RI R LIDA ADT L + + TPL FAT+ R + GRK+AT+EQL L RLL +VDAVHAVSWLW
Sbjct: 217 VDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAG---GGAWYVNNTLDPFGRTPLVCTIE--ACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKV--GRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLW 364
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.220e-29 Identity = 78/156 (50.00%), Postives = 92/156 (58.97%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADT---TLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
YVDIM +L GVVDTG AL AA + E SV FLL+ + G GG Y+NNT +PFGRTPL+C I G RI R LID GADT L R + TPL FAT R + G K+AT+EQL L RLL +++AVHAVSWLW
Sbjct: 226 YVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAG---GGTWYVNNTLDPFGRTPLVCTIE--ACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGG--KNATEEQLRSLKAIHRLLSQIEAVHAVSWLW 374
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 117 bits (293), Expect = 2.710e-27 Identity = 78/162 (48.15%), Postives = 94/162 (58.02%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDT-GTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFAT-QSFVER--TPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
++DIM +L AGV D G L A G E SV FLL++R + + N+ + G TPL C+I + G + RIVRLL+DAGADTT R VE TPLA T L R K + G K AT+EQL L RRLLLRVDAVHAVSWLWP + P
Sbjct: 4 HMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG--NPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDG--KPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAP 161
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 115 bits (288), Expect = 9.770e-25 Identity = 80/170 (47.06%), Postives = 96/170 (56.47%), Query Frame = 2
Query: 614 NTSYVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIG----YLNNTQEPFGRTPLICAINLGTDGLCHR--RIVRLLIDAGADTTLAARFATQS---FVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
+ ++DIM +L +AGVVDTG AL AA G E SV FLL+ R + GG G YLN ++ G TPL+ T G + RIVR+L+DAGADTT + TPLAF R K + G K ATKE L+ L RLLLRVDAVHAVSWLWP P
Sbjct: 321 SNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHR--HKEGGCGVEGAYLN-ARDVNGYTPLVVC----TQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADG-KPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAP 482
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 109 bits (273), Expect = 4.600e-23 Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSF---VERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLW 1081
++D+M +L DAGVVDTG AL G ER++ FLL+++ G T Y + ++ G TPL+ A+ T G C R+VRLL+DAGAD TLA R F + TPL AT K + AT +QL L +RRLLL+V+ VHA SWLW
Sbjct: 227 HLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQK-GEGTARTTYASTPRDGRGHTPLLSAV---TTGPCSPRVVRLLVDAGADATLAVR-VPDGFGRSTKYTPLDCATRCLAEKVV--DEDFATAQQLRNLRASRRLLLQVEVVHATSWLW 375
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 106 bits (265), Expect = 6.020e-22 Identity = 69/159 (43.40%), Postives = 88/159 (55.35%), Query Frame = 2
Query: 626 VDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQ---SFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINV 1093
++IM +L +AGVVDTG AL AA +G E + FLL++ T NT++ G TPL+ I R+VRLL++AGADTT Q V TPL R K + GR A+ EQL L RRLLLRV+AVHAVSWLWP ++
Sbjct: 233 LNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQH-----YRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDI 386
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 104 bits (259), Expect = 6.340e-21 Identity = 70/157 (44.59%), Postives = 85/157 (54.14%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFAT---QSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWP 1084
+V I+ +L AGVVD G+ALA AA G E SV FLL++ EG + N FG TPL+ I T G C RIVRLL+DAGADTT A R Q+ T L L K G T E+ L T RLLL+V+A HA+SW+WP
Sbjct: 233 HVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSAYVNKLNRFGLTPLLENI---TCGHCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD----TGEEPHNLQATFRLLLQVEAAHAISWVWP 382
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI) HSP 1 Score: 103 bits (258), Expect = 7.320e-21 Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 2
Query: 623 YVDIMTVLVDAGVVDTGTALAKAAHHGLERSVTFLLKRREGNTTGGIGYLNNTQEPFGRTPLICAINLGTDGLCHRRIVRLLIDAGADTTLAARFATQSFVERTPLAFATYLFRFKTIMGGRKDATKEQLEILADTRRLLLRVDAVHAVSWLWPINVP 1096
++ IMT L DAGVVDTGTAL A GLE V FLL+++ NT GG Y+N TPL AI + R+VR+L+DAGAD T + + R+PL+ R K AT+EQL L RRLLLRV+A++A SWLW N+P
Sbjct: 284 HMSIMTALTDAGVVDTGTALFNVAAKGLEAPVKFLLQQKW-NTPGG-AYVNTRSRNAKFTPLFIAIEGASP-----RVVRMLLDAGADVTSTC--SLPGGISRSPLSQCESNIRSKFCQA--LPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIP 430 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig171.93.1 >prot_P-littoralis_Contig171.93.1 ID=prot_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp MLTIVSNGTVDVDFRHDGDSKGWTPLMLAAFEGNARVAGLFLEKGADVSIback to top mRNA from alignment at P-littoralis_Contig171:297135..298233+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig171.93.1 ID=mRNA_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1099bp|location=Sequence derived from alignment at P-littoralis_Contig171:297135..298233+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig171:297135..298233+ >mRNA_P-littoralis_Contig171.93.1 ID=mRNA_P-littoralis_Contig171.93.1|Name=mRNA_P-littoralis_Contig171.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig171:297135..298233+ (Pylaiella littoralis U1_48)back to top |