mRNA_P-littoralis_Contig1027.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1027.12.1
Unique NamemRNA_P-littoralis_Contig1027.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1027.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1027contigP-littoralis_Contig1027:41672..42841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1127
Hectar predicted targeting categoryother localisation
Exons2
Cds size633
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789364.2627609-UTR-P-littoralis_Contig1027:41671..416901680789364.2627609-UTR-P-littoralis_Contig1027:41671..41690Pylaiella littoralis U1_48UTRP-littoralis_Contig1027 41672..41690 +
1680789364.2894294-UTR-P-littoralis_Contig1027:42366..428411680789364.2894294-UTR-P-littoralis_Contig1027:42366..42841Pylaiella littoralis U1_48UTRP-littoralis_Contig1027 42367..42841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789364.2731678-CDS-P-littoralis_Contig1027:41690..422571680789364.2731678-CDS-P-littoralis_Contig1027:41690..42257Pylaiella littoralis U1_48CDSP-littoralis_Contig1027 41691..42257 +
1680789364.2814834-CDS-P-littoralis_Contig1027:42300..423661680789364.2814834-CDS-P-littoralis_Contig1027:42300..42366Pylaiella littoralis U1_48CDSP-littoralis_Contig1027 42301..42366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1027.12.1prot_P-littoralis_Contig1027.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1027 41691..42366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1027.12.1

>prot_P-littoralis_Contig1027.12.1 ID=prot_P-littoralis_Contig1027.12.1|Name=mRNA_P-littoralis_Contig1027.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=211bp
MSVGSGGAAAGGRRGDARGGASDAGPAVRGGGHAARGRGGGRGSNGKGKA
ISRSRGPPAGSRSPSVVPPSGSQGSGAGPGLQQFQGSDDVRNAHVSAVTS
SAQSGQGATGGAGGSGHVDEDDESERESAQIAADDTEATALSGGTLGRQQ
RSGQIGRTRATVYRGDPATFDGNMGHQISSVLSMVVNKYEAQACPEMVVD
LGTSPRRILA*
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mRNA from alignment at P-littoralis_Contig1027:41672..42841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1027.12.1 ID=mRNA_P-littoralis_Contig1027.12.1|Name=mRNA_P-littoralis_Contig1027.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig1027:41672..42841+ (Pylaiella littoralis U1_48)
GGACATCGCAGCGCTGTCGATGTCGGTTGGCAGTGGTGGTGCTGCGGCCG
GTGGACGTCGCGGTGACGCGCGTGGAGGTGCGAGTGATGCAGGTCCTGCA
GTTCGAGGAGGCGGTCACGCGGCAAGGGGAAGGGGAGGCGGCCGTGGTTC
GAATGGTAAGGGTAAGGCTATTTCACGTTCTCGTGGCCCCCCCGCTGGGT
CTAGGAGCCCCAGCGTTGTGCCTCCCTCGGGTTCGCAAGGATCTGGCGCT
GGTCCCGGCCTACAGCAGTTCCAGGGTTCGGACGATGTGCGGAATGCACA
TGTTTCAGCCGTAACCAGCAGCGCCCAGAGTGGGCAGGGCGCAACAGGCG
GGGCGGGAGGGTCAGGGCATGTAGATGAAGACGACGAATCCGAGCGTGAA
TCCGCCCAGATAGCAGCTGACGACACCGAAGCAACGGCCCTTTCTGGAGG
TACTTTGGGTAGGCAACAGCGGTCAGGACAGATCGGAAGGACGCGTGCAA
CGGTATACCGTGGCGACCCAGCGACCTTTGACGGCAACATGGGGCACCAA
ATTAGCTCTGTCCTCAGCATGGTGGTCAACAAGTACGCTGACCCGAACCG
GGGTGGAGCTGGCAGCGGGGGTGGTTTAGGAGGCGCAAGCGTGTCCGGAG
ATGGTGGTGGACCTGGGGACATCGCCGCGACGAATTCTCGCCTAACAGCA
TTGGAGGGCAGAGTGAAAAGCATCAAGGATCTTCTACTCCAACAGCAACA
GCAGAGGGTCATGAGCCACCCGCCGCCGCAGATCCCAGGCTGACCCCACC
CGTAATGGGGCCCGCCAGGGGCGCCAGGAGGTCCCTACCATCCCTACTCT
TTTGGCGGAATGGCAGCAGCGGCTGGACCCATGGCAGGAGTTCAACAGAA
TGTGCCTGCTCCATCTGCCTTGCCTGGGTCGGGGGCGGGTCAGGCGGCGG
GTGACGGTGACGCGCAGGGCCGACGTGGTGGAAGTCCTGCAGCTGTTTTA
CCTGAATCTGGTATCGTAGAGTCAGCTCCTGCAGGGACAGTTGGTCCTCC
CGGACAGGCTGTTGGCCTGCCACGCACTCCCTCTTCCTCCCGGACGGTTG
CAGCGGGGGAGGCGATGCAGGGGGGGGGCAGTGATTCGGCAAGCGGAGTA
CGACAGGCGCGCAGCGACGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1027:41672..42841+

>mRNA_P-littoralis_Contig1027.12.1 ID=mRNA_P-littoralis_Contig1027.12.1|Name=mRNA_P-littoralis_Contig1027.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=633bp|location=Sequence derived from alignment at P-littoralis_Contig1027:41672..42841+ (Pylaiella littoralis U1_48)
ATGTCGGTTGGCAGTGGTGGTGCTGCGGCCGGTGGACGTCGCGGTGACGC
GCGTGGAGGTGCGAGTGATGCAGGTCCTGCAGTTCGAGGAGGCGGTCACG
CGGCAAGGGGAAGGGGAGGCGGCCGTGGTTCGAATGGTAAGGGTAAGGCT
ATTTCACGTTCTCGTGGCCCCCCCGCTGGGTCTAGGAGCCCCAGCGTTGT
GCCTCCCTCGGGTTCGCAAGGATCTGGCGCTGGTCCCGGCCTACAGCAGT
TCCAGGGTTCGGACGATGTGCGGAATGCACATGTTTCAGCCGTAACCAGC
AGCGCCCAGAGTGGGCAGGGCGCAACAGGCGGGGCGGGAGGGTCAGGGCA
TGTAGATGAAGACGACGAATCCGAGCGTGAATCCGCCCAGATAGCAGCTG
ACGACACCGAAGCAACGGCCCTTTCTGGAGGTACTTTGGGTAGGCAACAG
CGGTCAGGACAGATCGGAAGGACGCGTGCAACGGTATACCGTGGCGACCC
AGCGACCTTTGACGGCAACATGGGGCACCAAATTAGCTCTGTCCTCAGCA
TGGTGGTCAACAAGTACGAGGCGCAAGCGTGTCCGGAGATGGTGGTGGAC
CTGGGGACATCGCCGCGACGAATTCTCGCCTAA
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