mRNA_P-littoralis_Contig171.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.85.1
Unique NamemRNA_P-littoralis_Contig171.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.650e-31
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTSEEQAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
            L W S Y+G GDV +W  EEQA FW+SGARF+PVHRMVE L+YLTKGVVEGE   NPHFCMPGPPNEIGIL+L +AW+++ ER
Sbjct:  333 LFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGEN--NPHFCMPGPPNEIGILLLEMAWAVYAER 413
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.450e-30
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTSEEQAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
            L W S Y+G GDV +W  EEQA FW+SGARF+PVHRMV+ L+YLTKGVVEGE   NPHFCMPGPPNEIGIL+L +AW+++ ER
Sbjct:  337 LFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGEN--NPHFCMPGPPNEIGILLLEMAWAVYAER 417
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.700e-20
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTSEEQAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
             LW+S Y G G V  W   +Q +F  SGARF+ V  M+ GL   TKG VEG    +PHFC+PGPP+E+G+L+L++ W++H ER
Sbjct:  134 FLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEG--GNDPHFCLPGPPDELGLLLLKIIWAIHQER 214
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.470e-19
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTSEE-QAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
              W+S Y+G GD   W S + + +FW SGA+F+ V  +V+GL  LT+ VVE     +PHFCMPGPP+E+GIL+L++ W+LH E+
Sbjct:  368 FFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHEK 451
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.730e-19
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTS-EEQAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
              W+S Y+G GD   W S + + +F  SGA+F+ V  MV+GL  LT+ VVE     +PHFCMPGPP+E+GIL+L++ W+LH E+
Sbjct:  102 FFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEK 185
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BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.630e-18
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 LLWVSHYDGNGDVASWTSEEQAEFWNSGARFLPVHRMVEGLEYLTKGVVEGETSGNPHFCMPGPPNEIGILVLRVAWSLHDER 249
             LW+S YDG+G V  W   ++ +F  SGARF+ V  M+ GL   TKG VE     +PHFC+PGPP+E+G L+L++ W+L+ ER
Sbjct:  134 FLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVEDRV--DPHFCLPGPPDELGFLLLKIIWALYQER 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KUF6_9PHAE7.650e-3171.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P7_ECTSI1.450e-3069.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5J2_9PHAE9.700e-2049.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG2_9PHAE1.470e-1948.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G974_ECTSI1.730e-1948.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LBA5_9PHAE1.630e-1848.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:273279..276205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1437
Hectar predicted targeting categoryother localisation
Exons3
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.918661-CDS-P-littoralis_Contig171:273278..2734161680789829.918661-CDS-P-littoralis_Contig171:273278..273416Pylaiella littoralis U1_48CDSP-littoralis_Contig171 273279..273416 +
1680789829.9287992-CDS-P-littoralis_Contig171:274837..2750561680789829.9287992-CDS-P-littoralis_Contig171:274837..275056Pylaiella littoralis U1_48CDSP-littoralis_Contig171 274838..275056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.9374647-UTR-P-littoralis_Contig171:275056..2757471680789829.9374647-UTR-P-littoralis_Contig171:275056..275747Pylaiella littoralis U1_48UTRP-littoralis_Contig171 275057..275747 +
1680789829.9517505-UTR-P-littoralis_Contig171:275817..2762051680789829.9517505-UTR-P-littoralis_Contig171:275817..276205Pylaiella littoralis U1_48UTRP-littoralis_Contig171 275818..276205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.85.1prot_P-littoralis_Contig171.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 273279..275056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.85.1

>prot_P-littoralis_Contig171.85.1 ID=prot_P-littoralis_Contig171.85.1|Name=mRNA_P-littoralis_Contig171.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
LLWVSHYDGNGDVASWTSEEQAEFWNSGARFLPVHRMVEGLEYLTKGVVE
GETSGNPHFCMPGPPNEIGILVLRVAWSLHDERVRREKKEEKEKEGEEGK
GKGKETGTGKETGKEGGH*
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mRNA from alignment at P-littoralis_Contig171:273279..276205+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.85.1 ID=mRNA_P-littoralis_Contig171.85.1|Name=mRNA_P-littoralis_Contig171.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2927bp|location=Sequence derived from alignment at P-littoralis_Contig171:273279..276205+ (Pylaiella littoralis U1_48)
CTGTTGTGGGTGTCTCACTACGATGGGAACGGGGACGTGGCCTCCTGGAC
CTCCGAGGAGCAAGCAGAGTTCTGGAACTCCGGCGCGCGGTTCCTGCCCG
TGCACCGGATGGTAGAGGGCCTCGAGTACCTGACCAAGGTATGACACATA
TGTGGCTGCGTATGTCTGCGTCTGCTCCGTCCACTATGATACGATACCTC
TTTTTTTCTTTGTTTTTCTGATTCTTTTTTTTTTTTGGGTTGCGCCTTGC
GTGGTTTCATATCAGTTTGTTTGAGTTTACAGATAATATCCTTTTACGCA
CAGCAGTAGCACCTGGCACCTGGCACACCTGGCTGCAGAAGGTCTGATGC
GGCCGGAGTTTCAAGACGAAAACGCGTACAGGGTGTGTATGATATGATAC
GTGCCCTGTCCGCTTGTCTGTCTGCGGGGTCGCGACTCTTGCCAAACTCG
GCTTGTCTCGGCTCGTGTTTGTTTGTGAACGGCGATCCGGAGGGACGAGG
AACAACACATATATTTCCTGGTCTATCACGATAAAGGAGAGTGGGGAGGG
CGGGTGGGGAGGGGGTCGAGTCGTCGTCCCGTTCGTTGCGCTCTCAGCGA
CCGTGAACTGAAGACAGATAAATAGATCCTTTTTGAGCTGTTGTTGCTCA
CCTCTGAGGTATCGGATGTGTCCCAGCTGTCATATGTACATACATGCATG
CGTAATTTTTGTGCTTTTTGTCTTTGTTTACGCTCATCAGTACACTTTTT
GCATCCCTGGGAAAGATCTTGGAATAAATTGTCAAAACATCAGATGGATC
TGAAAAAAAACAAGTGAACGTGTCGCCGTAAAAACAAATGGCGATGCCTT
CACTTGCTTGCTTGTGGAATGCGTTTTGAACATGTGGTTATGTTACAGCG
AGGGGTAAAAGCCTAGCTTTGGGGAGCCACGTGAAATTCCAAGTGACGAT
TACATACACAACAAAATGGCGATCCGAAATGGCGATCCGAAATGGCGATA
TTTGGCTACGTAGGGGTTAAGAGAGTGTTAGTGACGCGGTATTCCTCTCG
TTGCCTGCTCCTGTGTGCACGTCGAGCAAAAATACCCCTCTGCTACACAC
ATCAACAGTCTCGTGCGTCCATGTGAAACAGCCCCCCCCCCCCCCCACCT
GCCCTGCATGTATGTGGAGGTTGGGATCGGATACGTGAGGCTCGTCGGTT
AATCGTTGCTGTTTTCTGCCTGTAATCTCGTGTTTGTGTTTCTCGGTATG
TTTGTTTGTTCGTGTGCGTTGCCGTGGTTGTTTGTGTTGCTGTATAATAC
TCGGGTATGTGCTTTGTGTGTTTTGTGTGTTTTGTGTGTTTGTGTTGCTC
TCTGTGTGTTCGTGTGTCTTGTGTGTCCGTGTTTCGTGTGTCTTTTCACG
CGTCTCATCATGATCCCTGCCTTATTTCACGTAGTCTATGGTCTTACACT
TTCCGCATAATAATAACTCCCCACGTTCCACCCTCCGTTACCCCCCCCCG
TCAACTGCTCGCGCTTGATTCGTTGCCCGTTCATCGTTAACCGCCACCCT
CTGACCAAGGGCGTGGTTGAGGGAGAAACATCCGGCAATCCACACTTTTG
CATGCCCGGGCCGCCGAACGAGATCGGAATCCTGGTTCTCAGGGTAGCCT
GGTCGCTGCACGACGAGAGAGTGCGGCGAGAAAAAAAGGAAGAAAAAGAA
AAAGAAGGAGAAGAAGGGAAAGGAAAAGGAAAAGAAACAGGAACAGGAAA
AGAAACAGGAAAAGAAGGAGGGCACTGAAGGAAAATAAGACGAAGAAGAA
AAGCCGATGATGACAAACAAGAAGATGAAGAAGAAAAAGAGAAGGAAAAG
GAAAAGGAAAAGGAAAAGAAGGAGGACACCGGACGAAAATAAGACGAAGA
AGAAGCCGATGAAGAACAACAAGAAGAAGAAAAAGGCGAGCACGAGAAGG
AGGGAGACGGAGAAGGGCCCAGGATACGGTGACGGCTTCGATTGTGACGA
CCATTTTCGTCTCGTTGGTCCAGTTTTCTTGTTGCGGTGGGGTGGTTTCT
CTGCCTTGTGTTGACCACCCCACATATAGACCGGTAGGGAGAAACATGGG
GAGGATGGTGATCGGTTGTTTGTCTGCCGTCGGAAATAAATCCTCCTTAA
TGTAGGCCTTGAGGGGTAAAAACTTCTTCGAAGTAATATATGCCACCATA
CTGCTGTACCAGGTACAGCAGTATTGCATGTATTGCAACGTCTTCTCTCT
CGCTCTCTCTCTCTCTCTCTCTCTAGGGGGGATAGAGAGGGAGCAATATT
CAGGGGAAACTGTATACGCACAACATAATATTCTCGATAGGGTGACTAGA
CTCGAAGTATTGTGTGGAAAATGTGTGTGTATGGGTGTTTGTCTGTGGGC
ATATTCGTGTTATCATTAAAAATCATCCATTCGGGTGACAGAGCTTACAC
TTTTAGTTTCGATTCTGCCGTATCACGTACCGGTACATGTAGGTTTCAAG
GGTAGGACCGTTGGCTCGTGCCGCTACAGTCCCATTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTGAGATGGGATGTGTGCTACTAAATGAAGTGTA
ATGTATATTGGTCGGTTTCAGCTAGAGTGGAATGATGGGCGTTGCCGGCA
GTTGGGTGGGTGTGGATGATGTTGAAGGTTACGAACTTGTGCACTAAGTC
TCGGATGAAGGGTATGAATAGTTGGCTGCGGCGGCGGCAGCGGCGTGGGG
GATTGTTGTCCTTCGCCTACACTCCATCCAGAGTTCAGACCATGTATGCG
CGTATCCGGCACGGCACGGTTCGATTCCCTCCTTATTTGTTTGGGGGCAC
TTGCTGCGTCTCCCCGATGTGCCGAGTATTGACGACGTTCGTTGCTTCAC
TATCAAAGTGTAGCACCGTCTTCCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:273279..276205+

>mRNA_P-littoralis_Contig171.85.1 ID=mRNA_P-littoralis_Contig171.85.1|Name=mRNA_P-littoralis_Contig171.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig171:273279..276205+ (Pylaiella littoralis U1_48)
CTGTTGTGGGTGTCTCACTACGATGGGAACGGGGACGTGGCCTCCTGGAC
CTCCGAGGAGCAAGCAGAGTTCTGGAACTCCGGCGCGCGGTTCCTGCCCG
TGCACCGGATGGTAGAGGGCCTCGAGTACCTGACCAAGGGCGTGGTTGAG
GGAGAAACATCCGGCAATCCACACTTTTGCATGCCCGGGCCGCCGAACGA
GATCGGAATCCTGGTTCTCAGGGTAGCCTGGTCGCTGCACGACGAGAGAG
TGCGGCGAGAAAAAAAGGAAGAAAAAGAAAAAGAAGGAGAAGAAGGGAAA
GGAAAAGGAAAAGAAACAGGAACAGGAAAAGAAACAGGAAAAGAAGGAGG
GCACTGA
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