mRNA_P-littoralis_Contig171.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.66.1
Unique NamemRNA_P-littoralis_Contig171.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.66.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.130e-27
Identity = 78/198 (39.39%), Postives = 107/198 (54.04%), Query Frame = 3 
Query:  174 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIW---SKYSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWGNLQDGLYYTWKKENEKVKMRNKRNKVAKNNPVVLTGGEGNQTLSG 758
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +T  D  +   TV    W   S Y  A +            F   DG+LPSG Q  D W NLQ  L++  ++   + K     N  AK+ P+VLTG +  +T +G
Sbjct:    6 LLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMTTGNDSGSTTPTV----WFGPSTYRVAVRSGGTSTESGTGDF-LVDGDLPSGMQAEDIWENLQLYLWFEDRRTAGRKKEVAAANARAKSQPIVLTGDDDGETEAG 197
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BLAST of mRNA_P-littoralis_Contig171.66.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.140e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  174 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTE 329
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:    6 LLLPRNEHSHDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.130e-2739.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE8.140e-548.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:184024..186304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons3
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.2249985-CDS-P-littoralis_Contig171:184023..1842821680789829.2249985-CDS-P-littoralis_Contig171:184023..184282Pylaiella littoralis U1_48CDSP-littoralis_Contig171 184024..184282 -
1680789829.2355874-CDS-P-littoralis_Contig171:185145..1852391680789829.2355874-CDS-P-littoralis_Contig171:185145..185239Pylaiella littoralis U1_48CDSP-littoralis_Contig171 185146..185239 -
1680789829.2470534-CDS-P-littoralis_Contig171:185833..1862421680789829.2470534-CDS-P-littoralis_Contig171:185833..186242Pylaiella littoralis U1_48CDSP-littoralis_Contig171 185834..186242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789829.261548-UTR-P-littoralis_Contig171:186242..1863041680789829.261548-UTR-P-littoralis_Contig171:186242..186304Pylaiella littoralis U1_48UTRP-littoralis_Contig171 186243..186304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.66.1prot_P-littoralis_Contig171.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 184024..186242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.66.1

>prot_P-littoralis_Contig171.66.1 ID=prot_P-littoralis_Contig171.66.1|Name=mRNA_P-littoralis_Contig171.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=254bp
MHGASPTASSPVAFAAVYAHAGNTRTPSLSSMEEIFPLPLVTNDLSAMLL
TTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYL
DHTVPGFFAWWNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIWSK
YSEAGKIIKRDFNLLWDSFRTADGELPSGQQETDAWGNLQDGLYYTWKKE
NEKVKMRNKRNKVAKNNPVVLTGGEGNQTLSGESTAARDKAQQQSEEEVA
AARQ
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mRNA from alignment at P-littoralis_Contig171:184024..186304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.66.1 ID=mRNA_P-littoralis_Contig171.66.1|Name=mRNA_P-littoralis_Contig171.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2281bp|location=Sequence derived from alignment at P-littoralis_Contig171:184024..186304- (Pylaiella littoralis U1_48)
TTCTGTGTGCACAAAAGTCGAGTTTTTAGGTAGCCGATAGGGGGTGCGAA
GTAGTGCCGAATATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGC
CTTCGCTGCTGTGTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCA
GCAGCATGGAGGAAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCG
GCTATGCTGCTCACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCA
TCTAGCGATGGTTCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGA
AGCGCAAGATCGGCACCACCAACACCGAAGGACGGGATGCGCACGCAAAG
CAGAACTACCTCGACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAA
GTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCC
AGAGCACGCTGACTGACCAAAGTGAGATGCGGAAAGATTTGTAGGGTGGA
GCAGCTGCAGCAGCAGCTGCTGCAGCGCAGCGGCAGCAGTAACAGCAGTA
CCGGTACCAGTGTTTGCGTGCCACAAACTCTCAAGCAGGCTCACATCAGC
TATATTTCGCCTCTGTGCTGTTTCAGCCTTCGATTGCGAGTTCATCTGCT
GGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATAACTTCG
TCGAGAAAGAAAAAGAAACAACAGCAGTACTGCTGTATCTGATACGTACT
CCAGTATAATTTGCTCGTTCCCGAGGACAACAGTACAACAGCAGCAGTAT
ATACAAGACCACGCCTCTGCATCACGAACGACGCACATCCGACGAACCGT
GTGCATTGTGCGGCAACACTCGTCTACCTGATTTATTATTAATTATTTAC
ATAGTTTTGTTTGTATTGCTGCCCAGTGCTTTGGCTTGTTCATAGCTTGA
AGCCCTTTGCCGAGGGAGACGCTCGAAACCATGCCGACATATCAGTGCTT
GACGAATAACCCTCCACCCCGTTGGCCTCCTCGTTGCGTCCCGTCACGTT
GTTGCCTCCGTGCAGCTAACAGGCTGTACACAGTTGATGGTGCTATCTGG
AGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCT
CTGGGACAGGTGAGCGGTGATGACGGTGTTCCCAAGTACTTTTGTAGACC
TGTTTGCCAGATACAATCGACAAATCAAGATCGAGGTTATAGGTCCTAGC
GCAACAGACCTCGTGGTGTGATACGGATGACACGGCAGGGTTTGCCTGCA
GATCAACGCAATGAACATGAATATAGGTACAGGCACCACCCGTTTGAGAA
GCCGAAGACATCTATTGATGAGTGACTAGCGGTCATGTAGGCGATGGCGC
AGGTCCGAGCCCGCATCATATACATGGTCGCTGCAAGATGGGTGACACGC
ACTAAATACGACCGACAAACAGCAGCAGTAGACAGCATCAGGGTGCTCTG
TTTTCTCGTCTGCTTCGCACGTTTGTGAGCCAATGTTGAAGAATGGCTCC
AAATACCACTAATGCCACAAAAGTTTTTTCCGTTTTCTCGCAAAAGGGGT
GTAAACCTCCGGTTGGTCGCTGCATATGTGCCATGTCTCTTGTTGCGTTA
AATGAGCTCCACGAGTAAACGTTACCGCTGCAAGTGTTCCGCCAATTTCT
GTGCGTTCTTGCGTACCCAACTTCACGCCCCTAGCCGCCAAGGTATTTGC
GTGTGTGCCAAACACTTTGGTCTGGCTCTCTACGCTCTCGTTCACGTGAT
GATTGGTGTACATTTTCTCTACTGGTAGTCGACTCGAGGATCTGACTTTT
GTTTTGCACGTTTGACAATTCCAAGTACCACGCGCAGCTCATACTATCGT
GCGTCGGAGCTCGGACCATCTATATCTCAATCTGTTGGTCGAAGACGACA
CGGCATGCTCGCCAGAAAATTTACCAAAGGTTTTTTGTTGTCGAATCCTC
TGCGTTCCGTGTTCGTTGCCAGTTTTAGGACAGCAGATGGTGAACTTCCT
TCAGGACAGCAGGAGACCGACGCCTGGGGAAACCTGCAGGACGGGCTATA
CTACACCTGGAAGAAAGAAAACGAGAAGGTGAAGATGCGGAACAAGCGAA
ACAAAGTGGCGAAGAATAATCCCGTGGTGTTGACGGGAGGCGAGGGGAAC
CAAACACTGTCCGGGGAGTCGACGGCAGCCCGGGATAAGGCACAGCAGCA
GTCGGAGGAGGAGGTGGCTGCAGCAAGGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:184024..186304-

>mRNA_P-littoralis_Contig171.66.1 ID=mRNA_P-littoralis_Contig171.66.1|Name=mRNA_P-littoralis_Contig171.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=762bp|location=Sequence derived from alignment at P-littoralis_Contig171:184024..186304- (Pylaiella littoralis U1_48)
ATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTGT
GTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGG
AAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGCTC
ACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATGGT
TCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGATCG
GCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACCTC
GACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCT
GCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGCACGCTGA
CTGACCAAACTAACAGGCTGTACACAGTTGATGGTGCTATCTGGAGCAAG
TACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCTGGGA
CAGTTTTAGGACAGCAGATGGTGAACTTCCTTCAGGACAGCAGGAGACCG
ACGCCTGGGGAAACCTGCAGGACGGGCTATACTACACCTGGAAGAAAGAA
AACGAGAAGGTGAAGATGCGGAACAAGCGAAACAAAGTGGCGAAGAATAA
TCCCGTGGTGTTGACGGGAGGCGAGGGGAACCAAACACTGTCCGGGGAGT
CGACGGCAGCCCGGGATAAGGCACAGCAGCAGTCGGAGGAGGAGGTGGCT
GCAGCAAGGCAA
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