mRNA_P-littoralis_Contig171.20.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.20.2
Unique NamemRNA_P-littoralis_Contig171.20.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.400e-9
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   58 VLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAW 171
            ++ G+ LPMQGST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:   49 IINGSVLPMQGSTHTPDRPARAGSQRRHTTPSLSTQAW 86
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BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.270e-9
Identity = 34/58 (58.62%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   67 GAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWACHRDNVASIRPLGQLFLLLFDL 240
            GAGLPMQ ST TPDR   AGNQRRHTTPS STQAW   R        L  +F L  D+
Sbjct:   37 GAGLPMQRSTHTPDRPTIAGNQRRHTTPSPSTQAWEESRGARRQRENLADIFGLDADI 94
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BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.030e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   58 VLFGAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWA------CHRDNVASI 201
            ++ G+ LPMQGS  TPDR A  G+QRRHTTPSLSTQAW         RDN+A +
Sbjct:   49 IINGSVLPMQGSQHTPDRPAREGSQRRHTTPSLSTQAWEESRGARRQRDNLADL 102
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BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.630e-7
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   82 MQGSTRTPDRTASAGNQRRHTTPSLSTQAW 171
            MQGST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:    1 MQGSTHTPDRPARAGSQRRHTTPSLSTQAW 30
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BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.470e-5
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   88 GSTRTPDRTASAGNQRRHTTPSLSTQAW 171
            GST TPDR A AG+QRRHTTPSLSTQAW
Sbjct:   74 GSTHTPDRPARAGSQRRHTTPSLSTQAW 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.20.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE3.400e-976.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE6.270e-958.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI3.030e-857.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI6.630e-786.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF8_9PHAE1.470e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:84457..85280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size273
Hectar predicted targeting categorysignal peptide
Exons3
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789828.1755996-CDS-P-littoralis_Contig171:84456..845571680789828.1755996-CDS-P-littoralis_Contig171:84456..84557Pylaiella littoralis U1_48CDSP-littoralis_Contig171 84457..84557 -
1680789828.1857855-CDS-P-littoralis_Contig171:84600..847051680789828.1857855-CDS-P-littoralis_Contig171:84600..84705Pylaiella littoralis U1_48CDSP-littoralis_Contig171 84601..84705 -
1680789828.1966934-CDS-P-littoralis_Contig171:85213..852801680789828.1966934-CDS-P-littoralis_Contig171:85213..85280Pylaiella littoralis U1_48CDSP-littoralis_Contig171 85214..85280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.20.2prot_P-littoralis_Contig171.20.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 84457..85280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.20.2

>prot_P-littoralis_Contig171.20.2 ID=prot_P-littoralis_Contig171.20.2|Name=mRNA_P-littoralis_Contig171.20.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MTFRGPPSVKLAFLLFINFVLFGAGLPMQGSTRTPDRTASAGNQRRHTTP
SLSTQAWACHRDNVASIRPLGQLFLLLFDLARNGKPRHRR*
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mRNA from alignment at P-littoralis_Contig171:84457..85280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.20.2 ID=mRNA_P-littoralis_Contig171.20.2|Name=mRNA_P-littoralis_Contig171.20.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=824bp|location=Sequence derived from alignment at P-littoralis_Contig171:84457..85280- (Pylaiella littoralis U1_48)
ATGACTTTTCGGGGACCACCGTCAGTTAAACTGGCATTCCTCTTGTTCAT
CAACTTCGTTCTATTCGGTGAGCTTTATTGTGTTGAACGATTCTTCTTGT
GTAGCTTGTCCAAATACATTTGAGGCCGCAGCCGATTTCGACGTACTGTG
GGACTATTTCAGTTATTGCATGTCGGGTAAGTCCAGCTTCACATAGGCCA
TGTCCTCCCGCTGGTCGTCCGTTCCAGGTAGTATTAAGGCTTGAAAGGGT
GTTATCGGTAGGGTTAGACTAACTGCCACGCCGCAGTTCCACGCCACAGT
TGGTTCCGCGCACCTTCGAATCTAGCTTCAAGACAATTCAGGGATCACCT
TCTTGGCGCCGTGGTTGTTTGTGGAATTCCACGATCGACCTCCCAGTGTT
CCTTCAAACGCGAACGATCGTAACCCCGGAATGCTACCGTTGCATGTTGT
GCTATGGAGCGGCGACGTCCGTTTTTTTATCCATTTGCATCGTATGGATA
TACCAAGGAACACTATGCGTGCTGCATTTTGAACAGACAACACATGCGCT
TTGCTACCCTGTCATCCAAACCCAGGGGCAGGACTACCGATGCAGGGATC
TACCCGCACGCCAGACAGGACCGCAAGCGCGGGGAATCAACGACGGCACA
CAACGCCATCGCTGAGCACGCAGGCTTGGGAGGAAAGCAGGGGGCTCCGC
GCCAACGTGTGAGTGGAATTTCTCGTGTCACCGAGACAATGTTGCGTCTA
TACGCCCTTTGGGTCAGCTGTTCTTGCTGTTGTTTGACTTGGCGCGGAAC
GGTAAACCCAGACACCGACGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:84457..85280-

>mRNA_P-littoralis_Contig171.20.2 ID=mRNA_P-littoralis_Contig171.20.2|Name=mRNA_P-littoralis_Contig171.20.2|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig171:84457..85280- (Pylaiella littoralis U1_48)
ATGACTTTTCGGGGACCACCGTCAGTTAAACTGGCATTCCTCTTGTTCAT
CAACTTCGTTCTATTCGGGGCAGGACTACCGATGCAGGGATCTACCCGCA
CGCCAGACAGGACCGCAAGCGCGGGGAATCAACGACGGCACACAACGCCA
TCGCTGAGCACGCAGGCTTGGGCGTGTCACCGAGACAATGTTGCGTCTAT
ACGCCCTTTGGGTCAGCTGTTCTTGCTGTTGTTTGACTTGGCGCGGAACG
GTAAACCCAGACACCGACGATGA
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