mRNA_P-littoralis_Contig171.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.19.1
Unique NamemRNA_P-littoralis_Contig171.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 4.710e-61
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 1
Query:    4 ILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 381
            ILEHRF  +RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSG+DF  SDYR++IMLAV++AE AENVRARSRNS  AVLCPRYI+VEPL+A PVVEAPVPAA G +T+VNPYA SK
Sbjct:  239 ILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPAAQGSSTIVNPYASSK 364          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 2.530e-54
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 1
Query:   22 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 381
            AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYR +IMLAV++A  AENVR+RSRNS  AVLCPRYI+VEPL+A PVVE  VPAA G +T+VNPYA SK
Sbjct:  917 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPAAQGSSTIVNPYASSK 1036          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.490e-29
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITV 291
            D +EHRF H R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G+DF  S  R +I+L V++ E +  +RA SRN + AV+ PRY++V
Sbjct:   67 DPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSV 163          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.050e-28
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVE 321
            D++EH F H+R GLG+ RNPTAAQAKER  RGD+ RGLHG  RAN+NRNAR G DF  S YRA++ML V E E +  +RAR+++S  AVL P YI+V    A PV +
Sbjct:  660 DVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVAD 766          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.000e-25
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   28 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEA-----PVPAATGPATVV-NPYAP 375
            +R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G DF  S  R +I+L V++ E +  +RA SRN + AV+  RY++V    A P VE        PA+ G   VV N YAP
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSYAP 122          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.760e-24
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVV 318
            DI EHR+ H+  GLG+  NPT A+AKER+ RGDL R LHG SRA  N+NAR G+DF  S  R +I+L V++AE +  +RA S+N + AV+ PRYI+++   A PVV
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVV 635          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.670e-23
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   28 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVE 294
            +R  LG+  NP AAQAKER+ RGDL R LHG SRAN N+NAR G+DF  S  R +IML V++AE +  +RA SRN   AV+ PRYI+++
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISID 89          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.250e-20
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    1 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRN--ARSGDDFNVSDYRAK--IMLAVSEAETAENVRARSRNSSVAVLCPRYITV 291
            DI EHRF+HIRA LGT RNPTA +AK+RS  GDL R  +G  R N +RN  ARSG DF       K  I+LAV++ ET + VRA  RN+   VLCPRY+ +
Sbjct:  180 DICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYMDI 280          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.930e-16
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   97 DLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPV-----PAATGPATVV-NPYAP 375
            DLNRGLHGGSRAN NR +R G+DF  S  R +I+L V++ E +  +RA SRN + AV+ PRY++V    A P VE        PA+ G   VV NPYAP
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPYAP 187          
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.350e-11
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIML 201
            DI+EHR+ H+   LG+  NPTAAQAKER+ + DL R LHG SRAN    AR G+DF  S  R +IML
Sbjct:  145 DIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIML 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE4.710e-6183.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.530e-5484.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2C2_9PHAE7.490e-2958.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.050e-2857.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE4.000e-2551.64Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE2.760e-2452.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE5.670e-2356.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE3.250e-2054.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE3.930e-1650.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE4.350e-1156.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:83633..84094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size462
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789828.126034-UTR-P-littoralis_Contig171:83632..837101680789828.126034-UTR-P-littoralis_Contig171:83632..83710Pylaiella littoralis U1_48UTRP-littoralis_Contig171 83633..83710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789828.1418102-CDS-P-littoralis_Contig171:83710..840941680789828.1418102-CDS-P-littoralis_Contig171:83710..84094Pylaiella littoralis U1_48CDSP-littoralis_Contig171 83711..84094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.19.1prot_P-littoralis_Contig171.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 83711..84094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.19.1

>prot_P-littoralis_Contig171.19.1 ID=prot_P-littoralis_Contig171.19.1|Name=mRNA_P-littoralis_Contig171.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNA
RSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPL
SAPPVVEAPVPAATGPATVVNPYAPSK*
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mRNA from alignment at P-littoralis_Contig171:83633..84094-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.19.1 ID=mRNA_P-littoralis_Contig171.19.1|Name=mRNA_P-littoralis_Contig171.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig171:83633..84094- (Pylaiella littoralis U1_48)
GACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGGACATT GAGGAACCCCACGGCGGCACAGGCGAAGGAGAGGTCCGTACGCGGCGACC TCAACCGAGGTCTACATGGAGGTTCACGGGCGAACTTCAACCGCAACGCG CGGTCCGGCGATGACTTCAACGTCTCCGATTACAGGGCCAAAATCATGTT GGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGATCCAGGA ATTCATCTGTCGCTGTTTTGTGTCCGCGTTACATTACCGTCGAACCCCTT TCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCGGCCGCCACGGGCCCGGC GACAGTTGTGAACCCATACGCGCCGTCGAAGTAGAAGTATGTATGCCGCC CAAGCAGAGGCTCTTGGAGGGTCTATGTGGAAGTATTCATAATCGGAGGT GAGGACGTCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:83633..84094-

>mRNA_P-littoralis_Contig171.19.1 ID=mRNA_P-littoralis_Contig171.19.1|Name=mRNA_P-littoralis_Contig171.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig171:83633..84094- (Pylaiella littoralis U1_48)
GACATTCTCGAACACCGGTTTGCCCACATCCGTGCGGGGTTGGGGACATT
GAGGAACCCCACGGCGGCACAGGCGAAGGAGAGGTCCGTACGCGGCGACC
TCAACCGAGGTCTACATGGAGGTTCACGGGCGAACTTCAACCGCAACGCG
CGGTCCGGCGATGACTTCAACGTCTCCGATTACAGGGCCAAAATCATGTT
GGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGATCCAGGA
ATTCATCTGTCGCTGTTTTGTGTCCGCGTTACATTACCGTCGAACCCCTT
TCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCGGCCGCCACGGGCCCGGC
GACAGTTGTGAACCCATACGCGCCGTCGAAGTAG
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