mRNA_P-littoralis_Contig171.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.29.1
Unique NamemRNA_P-littoralis_Contig171.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:96932..97447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size516
Hectar predicted targeting categorysignal anchor
Exons1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.550337-UTR-P-littoralis_Contig171:96931..969971680789827.550337-UTR-P-littoralis_Contig171:96931..96997Pylaiella littoralis U1_48UTRP-littoralis_Contig171 96932..96997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.559628-CDS-P-littoralis_Contig171:96997..974471680789827.559628-CDS-P-littoralis_Contig171:96997..97447Pylaiella littoralis U1_48CDSP-littoralis_Contig171 96998..97447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.29.1prot_P-littoralis_Contig171.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 96998..97447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.29.1

>prot_P-littoralis_Contig171.29.1 ID=prot_P-littoralis_Contig171.29.1|Name=mRNA_P-littoralis_Contig171.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MGFLLLWLNWFESYGRKTELVYSSAGAKYPAAAAAAAAGCLVFFFPFFFH
VIDVCKLFFVSLSVTLGFKQSSEEHDHTHSSRGMALLLVLLHSFESDQQI
NQDFPRAKRYGNVLRAEAEMFLGLPEDGTGKRSRLCIAVWERDGKAGRR*
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mRNA from alignment at P-littoralis_Contig171:96932..97447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.29.1 ID=mRNA_P-littoralis_Contig171.29.1|Name=mRNA_P-littoralis_Contig171.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig171:96932..97447+ (Pylaiella littoralis U1_48)
TGTTGATGATGTCTTGCGGCCCCAGATGACCACCGGAGGAGAAGAACCGG
ACACAGCTCACGGGCGATGGGTTTTTTATTGCTGTGGCTCAATTGGTTCG
AGAGTTATGGACGAAAAACCGAACTGGTATACAGCAGTGCCGGCGCAAAA
TACCCTGCTGCTGCTGCTGCTGCTGCTGCGGGCTGTCTTGTCTTCTTTTT
TCCTTTTTTTTTCCACGTCATCGATGTCTGCAAACTTTTTTTTGTGAGCC
TGTCTGTGACTCTCGGCTTCAAACAATCATCGGAGGAGCACGACCATACA
CACAGCTCACGGGGCATGGCTTTGTTATTGGTGTTGCTTCACTCCTTCGA
GAGTGATCAACAAATAAATCAGGACTTTCCGCGGGCGAAACGGTACGGTA
ACGTTTTGCGCGCCGAGGCGGAAATGTTTTTGGGTCTTCCCGAGGACGGT
ACGGGAAAACGTTCCCGTTTGTGTATCGCGGTATGGGAACGGGACGGGAA
GGCGGGAAGGCGCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:96932..97447+

>mRNA_P-littoralis_Contig171.29.1 ID=mRNA_P-littoralis_Contig171.29.1|Name=mRNA_P-littoralis_Contig171.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig171:96932..97447+ (Pylaiella littoralis U1_48)
ATGGGTTTTTTATTGCTGTGGCTCAATTGGTTCGAGAGTTATGGACGAAA
AACCGAACTGGTATACAGCAGTGCCGGCGCAAAATACCCTGCTGCTGCTG
CTGCTGCTGCTGCGGGCTGTCTTGTCTTCTTTTTTCCTTTTTTTTTCCAC
GTCATCGATGTCTGCAAACTTTTTTTTGTGAGCCTGTCTGTGACTCTCGG
CTTCAAACAATCATCGGAGGAGCACGACCATACACACAGCTCACGGGGCA
TGGCTTTGTTATTGGTGTTGCTTCACTCCTTCGAGAGTGATCAACAAATA
AATCAGGACTTTCCGCGGGCGAAACGGTACGGTAACGTTTTGCGCGCCGA
GGCGGAAATGTTTTTGGGTCTTCCCGAGGACGGTACGGGAAAACGTTCCC
GTTTGTGTATCGCGGTATGGGAACGGGACGGGAAGGCGGGAAGGCGCTAG
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