mRNA_P-littoralis_Contig171.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.21.1
Unique NamemRNA_P-littoralis_Contig171.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig171.21.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.970e-9
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:  261 KCARLTVLILRRRARHMRGHIRTGPSAPALYRTPIR*LEHLLVSHSVC 404
            K  +L  LILRRRA HMRG IRTGPS  AL+RTPIR LE LL SHS C
Sbjct:   17 KSRKLAGLILRRRAWHMRGWIRTGPSPQALHRTPIRLLERLLDSHSAC 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEF8_9PHAE9.970e-970.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:86327..86731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.4981508-UTR-P-littoralis_Contig171:86326..863601680789827.4981508-UTR-P-littoralis_Contig171:86326..86360Pylaiella littoralis U1_48UTRP-littoralis_Contig171 86327..86360 -
1680789827.520277-UTR-P-littoralis_Contig171:86708..867311680789827.520277-UTR-P-littoralis_Contig171:86708..86731Pylaiella littoralis U1_48UTRP-littoralis_Contig171 86709..86731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.5090795-CDS-P-littoralis_Contig171:86360..867081680789827.5090795-CDS-P-littoralis_Contig171:86360..86708Pylaiella littoralis U1_48CDSP-littoralis_Contig171 86361..86708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.21.1prot_P-littoralis_Contig171.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 86361..86708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.21.1

>prot_P-littoralis_Contig171.21.1 ID=prot_P-littoralis_Contig171.21.1|Name=mRNA_P-littoralis_Contig171.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MLHSTTSVEAGGVLHTLSCSIAASDAFFVTCVSILSRTHRRVRLKITHPL
DRQSKHDYRQLWYITIKRTTWTVTVRDLRKCARLTVLILRRRARHMRGHI
RTGPSAPALYRTPIR*
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mRNA from alignment at P-littoralis_Contig171:86327..86731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.21.1 ID=mRNA_P-littoralis_Contig171.21.1|Name=mRNA_P-littoralis_Contig171.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig171:86327..86731- (Pylaiella littoralis U1_48)
CCCCGCAGCATAACCTCCCCAACATGTTGCACAGCACCACCTCAGTAGAA
GCTGGGGGAGTGCTGCACACCCTGTCATGTAGCATAGCCGCGTCAGACGC
CTTTTTTGTCACTTGTGTCTCAATATTGTCACGGACCCACCGCCGTGTTC
GACTCAAGATAACACACCCCCTAGACCGACAATCAAAGCACGATTATCGA
CAACTATGGTACATAACTATTAAAAGAACAACTTGGACGGTAACTGTACG
AGATCTCCGAAAGTGCGCTCGATTGACGGTTCTCATTCTAAGAAGGCGTG
CACGGCACATGCGGGGACACATCAGGACAGGACCCTCTGCACCAGCCCTT
TACCGTACACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGT
GTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig171:86327..86731-

>mRNA_P-littoralis_Contig171.21.1 ID=mRNA_P-littoralis_Contig171.21.1|Name=mRNA_P-littoralis_Contig171.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig171:86327..86731- (Pylaiella littoralis U1_48)
ATGTTGCACAGCACCACCTCAGTAGAAGCTGGGGGAGTGCTGCACACCCT
GTCATGTAGCATAGCCGCGTCAGACGCCTTTTTTGTCACTTGTGTCTCAA
TATTGTCACGGACCCACCGCCGTGTTCGACTCAAGATAACACACCCCCTA
GACCGACAATCAAAGCACGATTATCGACAACTATGGTACATAACTATTAA
AAGAACAACTTGGACGGTAACTGTACGAGATCTCCGAAAGTGCGCTCGAT
TGACGGTTCTCATTCTAAGAAGGCGTGCACGGCACATGCGGGGACACATC
AGGACAGGACCCTCTGCACCAGCCCTTTACCGTACACCCATCCGATAG
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