mRNA_P-littoralis_Contig171.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig171.110.1
Unique NamemRNA_P-littoralis_Contig171.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig171contigP-littoralis_Contig171:366324..367830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1378
Hectar predicted targeting categoryother localisation
Exons2
Cds size1377
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.2637327-CDS-P-littoralis_Contig171:366324..3670421680789827.2637327-CDS-P-littoralis_Contig171:366324..367042Pylaiella littoralis U1_48CDSP-littoralis_Contig171 366325..367042 -
1680789827.2734826-CDS-P-littoralis_Contig171:367171..3678301680789827.2734826-CDS-P-littoralis_Contig171:367171..367830Pylaiella littoralis U1_48CDSP-littoralis_Contig171 367172..367830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig171.110.1prot_P-littoralis_Contig171.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig171 366325..367830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig171.110.1

>prot_P-littoralis_Contig171.110.1 ID=prot_P-littoralis_Contig171.110.1|Name=mRNA_P-littoralis_Contig171.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=459bp
PASFENGSDPSTNRDRGLGSSAVAVATTAAAAAATAAFLSMESALKSGSW
ANSFSTERNDENVLGGDNGYVAGVSPNEPAGSSKRRSGGSTTTVESERGG
GGGGGGGGGGGGSLSTPMPPTPGSLPGLVSMSLSNSLMEEGSGLTGSSPN
ETFVRSQARQAGQQLQSPPVPQSSSASDNGNGNEKGSNAIVGDVGLATRL
PSSRLDSLKQQQQQQQQQQHCSSGRGEGPVMYPFLSNASVSAGRGDGGGM
TGLVFSPIPQPSPESFRGDETETGAGRVKSRGDDDGGGSHRNNVGVAVAN
AAGPSRGGRSKTLGIGGRRLLLRRRRSSSNSSNSSCAGGSGTWGSVGGLP
VWDFFNTTSPRVGKKSPTNSAGLLRPATSTTTTRFTVTSPLASSSSSGSH
RSSMKRRSASERIQEFRRFGSGSGFFSSNVFSSGVFSSGGGGGGPNSDSR
GLLASCVEA
back to top

mRNA from alignment at P-littoralis_Contig171:366324..367830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig171.110.1 ID=mRNA_P-littoralis_Contig171.110.1|Name=mRNA_P-littoralis_Contig171.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1507bp|location=Sequence derived from alignment at P-littoralis_Contig171:366324..367830- (Pylaiella littoralis U1_48)
CCGGCCTCCTTCGAGAACGGCAGCGACCCGAGCACCAACAGAGATAGAGG
GCTGGGGTCGTCGGCGGTCGCGGTAGCTACGACGGCAGCGGCAGCAGCAG
CAACGGCTGCGTTTTTGTCGATGGAAAGTGCCCTGAAGAGCGGCAGCTGG
GCGAATAGCTTTTCAACCGAGCGAAATGACGAAAACGTCCTCGGCGGCGA
TAATGGATACGTCGCCGGCGTTTCCCCGAACGAACCCGCGGGAAGTAGCA
AGAGACGAAGCGGTGGTAGCACCACTACTGTCGAGAGCGAGCGGGGTGGT
GGTGGTGGCGGCGGTGGCGGCGGCGGTGGTGGTGGCAGTTTATCCACCCC
CATGCCCCCCACGCCGGGGTCGCTGCCTGGGCTCGTATCCATGTCGTTGT
CGAACAGCTTGATGGAGGAGGGTTCCGGACTGACGGGGTCGTCGCCGAAC
GAGACCTTCGTCCGCTCCCAGGCGCGGCAAGCGGGGCAGCAGCTTCAGTC
GCCGCCGGTTCCACAGTCAAGCAGCGCAAGCGACAACGGCAACGGCAACG
AGAAGGGCAGCAATGCCATTGTAGGCGATGTGGGTCTAGCCACGCGGCTT
CCTTCATCACGTCTTGATAGCCTTAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCAGGCGGCCGT
CTTATCGGTTCACCATCGAAGCAGAGGACGGCGGTGATGGGATGATGCTC
CCGACTTTGCCGGAGGGGGGTACTCGTGGCAGCAGCAGCTGTAGCAGCGG
TCGAGGAGAAGGCCCTGTCATGTACCCTTTCCTCTCCAATGCCAGCGTCA
GCGCTGGTAGAGGCGACGGTGGCGGCATGACGGGTCTCGTATTTTCCCCG
ATCCCTCAACCATCACCAGAAAGCTTCCGTGGAGACGAGACGGAAACCGG
AGCGGGCCGGGTGAAATCGAGGGGTGATGATGATGGTGGTGGTAGCCACA
GGAACAATGTCGGGGTAGCGGTTGCAAACGCGGCGGGACCAAGCAGGGGT
GGAAGAAGCAAGACCCTTGGGATCGGCGGCCGCCGCCTCCTCCTCCGCCG
CCGGCGCAGCAGCAGCAACAGCAGCAACAGCAGCTGTGCCGGCGGTTCCG
GCACCTGGGGTTCTGTAGGCGGACTGCCGGTGTGGGATTTTTTTAATACC
ACCAGCCCGCGAGTTGGTAAGAAGTCTCCCACTAACAGTGCCGGTTTGCT
GCGCCCGGCAACGTCAACGACGACGACGCGTTTCACTGTAACGTCACCTC
TGGCTAGTAGCAGCAGCAGCGGTAGCCACCGCAGTTCTATGAAGAGGAGG
AGTGCTAGCGAACGCATCCAAGAATTCAGGCGGTTTGGCTCGGGCTCCGG
ATTTTTCTCGTCAAACGTCTTCAGCAGCGGCGTCTTCAGTAGCGGCGGCG
GCGGTGGTGGCCCGAACAGCGACAGCAGAGGGCTGCTTGCTTCTTGCGTC
GAGGCCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig171:366324..367830-

>mRNA_P-littoralis_Contig171.110.1 ID=mRNA_P-littoralis_Contig171.110.1|Name=mRNA_P-littoralis_Contig171.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1377bp|location=Sequence derived from alignment at P-littoralis_Contig171:366324..367830- (Pylaiella littoralis U1_48)
CCGGCCTCCTTCGAGAACGGCAGCGACCCGAGCACCAACAGAGATAGAGG
GCTGGGGTCGTCGGCGGTCGCGGTAGCTACGACGGCAGCGGCAGCAGCAG
CAACGGCTGCGTTTTTGTCGATGGAAAGTGCCCTGAAGAGCGGCAGCTGG
GCGAATAGCTTTTCAACCGAGCGAAATGACGAAAACGTCCTCGGCGGCGA
TAATGGATACGTCGCCGGCGTTTCCCCGAACGAACCCGCGGGAAGTAGCA
AGAGACGAAGCGGTGGTAGCACCACTACTGTCGAGAGCGAGCGGGGTGGT
GGTGGTGGCGGCGGTGGCGGCGGCGGTGGTGGTGGCAGTTTATCCACCCC
CATGCCCCCCACGCCGGGGTCGCTGCCTGGGCTCGTATCCATGTCGTTGT
CGAACAGCTTGATGGAGGAGGGTTCCGGACTGACGGGGTCGTCGCCGAAC
GAGACCTTCGTCCGCTCCCAGGCGCGGCAAGCGGGGCAGCAGCTTCAGTC
GCCGCCGGTTCCACAGTCAAGCAGCGCAAGCGACAACGGCAACGGCAACG
AGAAGGGCAGCAATGCCATTGTAGGCGATGTGGGTCTAGCCACGCGGCTT
CCTTCATCACGTCTTGATAGCCTTAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCACTGTAGCAGCGGTCGAGGAGAAGGCCCTGTCATGTACCCTT
TCCTCTCCAATGCCAGCGTCAGCGCTGGTAGAGGCGACGGTGGCGGCATG
ACGGGTCTCGTATTTTCCCCGATCCCTCAACCATCACCAGAAAGCTTCCG
TGGAGACGAGACGGAAACCGGAGCGGGCCGGGTGAAATCGAGGGGTGATG
ATGATGGTGGTGGTAGCCACAGGAACAATGTCGGGGTAGCGGTTGCAAAC
GCGGCGGGACCAAGCAGGGGTGGAAGAAGCAAGACCCTTGGGATCGGCGG
CCGCCGCCTCCTCCTCCGCCGCCGGCGCAGCAGCAGCAACAGCAGCAACA
GCAGCTGTGCCGGCGGTTCCGGCACCTGGGGTTCTGTAGGCGGACTGCCG
GTGTGGGATTTTTTTAATACCACCAGCCCGCGAGTTGGTAAGAAGTCTCC
CACTAACAGTGCCGGTTTGCTGCGCCCGGCAACGTCAACGACGACGACGC
GTTTCACTGTAACGTCACCTCTGGCTAGTAGCAGCAGCAGCGGTAGCCAC
CGCAGTTCTATGAAGAGGAGGAGTGCTAGCGAACGCATCCAAGAATTCAG
GCGGTTTGGCTCGGGCTCCGGATTTTTCTCGTCAAACGTCTTCAGCAGCG
GCGTCTTCAGTAGCGGCGGCGGCGGTGGTGGCCCGAACAGCGACAGCAGA
GGGCTGCTTGCTTCTTGCGTCGAGGCC
back to top