mRNA_P-littoralis_Contig1700.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1700.1.1
Unique NamemRNA_P-littoralis_Contig1700.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1700.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1700contigP-littoralis_Contig1700:303..464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog6087.XP_004210482.1
PFAMsAsp_protease_2,RVT_1,gag-asp_proteas,rve
Model size162
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000119
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,39RZN@33154|Opisthokonta,3BK6W@33208|Metazoa
Descriptiontransposition, RNA-mediated
Cds size162
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789827.1189468-CDS-P-littoralis_Contig1700:302..4641680789827.1189468-CDS-P-littoralis_Contig1700:302..464Pylaiella littoralis U1_48CDSP-littoralis_Contig1700 303..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1700.1.1prot_P-littoralis_Contig1700.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1700 303..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1700.1.1

>prot_P-littoralis_Contig1700.1.1 ID=prot_P-littoralis_Contig1700.1.1|Name=mRNA_P-littoralis_Contig1700.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
HYAPRPRSKQAKCSKCKNSGGTGADILHSYRQCPLVVCHKCKRAGHIEKY
CTG*
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mRNA from alignment at P-littoralis_Contig1700:303..464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1700.1.1 ID=mRNA_P-littoralis_Contig1700.1.1|Name=mRNA_P-littoralis_Contig1700.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig1700:303..464+ (Pylaiella littoralis U1_48)
CATTACGCTCCCCGGCCTCGCTCTAAGCAGGCCAAGTGTTCCAAATGTAA
GAATAGCGGTGGAACGGGGGCGGACATTCTGCACTCGTACAGGCAGTGTC
CGCTGGTCGTGTGTCACAAATGCAAGCGCGCCGGCCACATTGAAAAGTAT
TGCACGGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1700:303..464+

>mRNA_P-littoralis_Contig1700.1.1 ID=mRNA_P-littoralis_Contig1700.1.1|Name=mRNA_P-littoralis_Contig1700.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig1700:303..464+ (Pylaiella littoralis U1_48)
CATTACGCTCCCCGGCCTCGCTCTAAGCAGGCCAAGTGTTCCAAATGTAA
GAATAGCGGTGGAACGGGGGCGGACATTCTGCACTCGTACAGGCAGTGTC
CGCTGGTCGTGTGTCACAAATGCAAGCGCGCCGGCCACATTGAAAAGTAT
TGCACGGGGTGA
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